NO25G02050, NO25G02050 (gene) Nannochloropsis oceanica

Overview
NameNO25G02050
Unique NameNO25G02050
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2532
Alignment locationchr25:643116..645647 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:643116..645647 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO25G02050 vs. NCBI_GenBank
Match: EWM21714.1 (hypothetical protein Naga_100183g6 [Nannochloropsis gaditana])

HSP 1 Score: 318.9 bits (816), Expect = 1.700e-83
Identity = 175/305 (57.38%), Postives = 209/305 (68.52%), Query Frame = 0 
Query:    1 MDLCSPSRAPLRQRKLSPMAAGVDTEETRLLRVIGLCTASILLLDIWAWISPGMLARSGTEHTVSDFDPSSFFYLFPFTLHALAGLWFFTRKQCQPLPFWRRVVRLRLFALLCLALAVPALVSRVVTLRTYCHLNGKIEEEVEEGSAFKACTSARMTNTSVMAVVYAVLGVSMVQALIELEALTKWRYQYQCNPCSYNRPFLPSTLPPYVSASSSISTSACXXXXXXNKEGGDEEGDEG-LHSARTVYDDNRALFGDATFYEDGTSPSPDGSLPPPLTPSPPVGKGVMGSSERSAFSSYVAGSCV 305
            MD C+PS  PLRQ+K+SP+A   + EETRLLR + LCTA ILLLDIW+WI PG+L  S   H  SDFDPSSFFYL P TLH +AGLWFFT KQ  PLPFWRRVV LRLF+ LCLALAVPAL++RVVTLRTYC L G++  +  EG  FKACT  RM NTS++AV+YA+LGV MVQAL ELE+L  WR+Q QC+   Y R    S    + + + SI    C      + +G   +G E  L+   +  DDNR LFGDA+ Y + T+P     +P  LTP P  G  VMGSSERSAFSSYV GSCV
Sbjct:    1 MDTCAPSSTPLRQKKVSPVAV-TEAEETRLLRTLALCTAGILLLDIWSWIWPGVLGGS-EMHAASDFDPSSFFYLLPITLHVMAGLWFFTSKQHPPLPFWRRVVCLRLFSFLCLALAVPALIARVVTLRTYCLLEGRVTADTTEGDVFKACTDVRMNNTSLIAVIYAILGVCMVQALNELESLCTWRHQQQCSTAPYPRSHYFSRPSCWATGAGSI----CASTQQASDDGDGHDGAEALLYHTLSASDDNRCLFGDASMYGERTTPLLPAPVPSSLTPPPSTGH-VMGSSERSAFSSYVVGSCV 298
The following BLAST results are available for this feature:
BLAST of NO25G02050 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21714.11.700e-8357.38hypothetical protein Naga_100183g6 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL047nonsL047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR045ncniR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006422NSK006422Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G02050.1NO25G02050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604170gene_8829Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100183g6gene8714Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G02050.1NO25G02050.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G02050 ID=NO25G02050|Name=NO25G02050|organism=Nannochloropsis oceanica|type=gene|length=2532bp
TGCGATTATTTGAATTTATTGCAACAACAGCACAATGACCCCAGAACGCA
CCTATACTATGCACCACAAACTGCACAACCAATATAACAGTCCTTCATAT
GAGCCTGCCAGCCAAGGGGCTGCTGTTAGGTGTAGGCTGCGTCCCAAGCT
CCACTTAGCAAGCATGCGCAGACTGGAGACTGGTTGCTCGCCTTGCTTAG
GAGTGATGGTATGGTGTTGTGGATGTGGGCGAGTATTCACTCCTACACCT
AAGCGATCGACTGAATCACCTATAAGTCGCGCCTGGGTATTTGATCAAAT
GATTAGATTGCTCGCCCTGAATGGGGCAATCTGATTTGGGCATCCACACG
CCCACACCTCTGCGCCCGGCCTTGCTGTCACACAAAATAGTCACGCAGGG
GATTCACGGCCTATCTAAATCTTGCCCCCACTCACAGGTATATGGATCTT
TGTTCCCCCTCTCGGGCGCCTCTGCGGCAGCGGAAGCTCTCGCCAATGGC
GGCTGGGGTCGACACGGAAGAGACACGGTTATTGCGgtaaggaaagagga
agtataggtgggcggcgtagaatgatcaaattagaagacatgtacgacaa
gtagggcatagaaaagacgggatagctcggtgaaatggagagcaggaaaa
caaatgagcggaactgtccgtgttggtagcattacatcccccccccttac
ttggctgtcatcagcgcctctcatttttctttctctctttttgcctgtca
acagGGTAATAGGCTTGTGTACGGCCAGTATTTTGCTACTGGACATTTGG
GCCTGGATCTCACCTGGAATGCTCGCGCGCTCGGGGACTgtaagtgcagg
gaagagtggcaagaggagggggtagtgaggcggcgcagcaaggaagtaaa
aggagatacgcagactgaaccacctttgcgtcagattttgaaaatcgagg
cttgaatattgtactgacctgattctaaagcctattttcgtcttccatgc
acctcacctttctctgcctcctttcttcctcctccatgttctcatccttc
ccttcccattcatttaaagGAGCACACCGTCAGCGACTTTGACCCCTCCT
CGTTTTTCTACCTCTTTCCCTTTACGCTGCATGCCTTGGCAGGGCTCTGG
TTCTTCACTCGgtaaggacaagaggggagggaagagagatggcgagggag
tagagaggggaggagggaggaggaggggatggagggatctcaaagaggga
gcaggcatgcatcaggcccttcgagattgccgtttattgaaataagacga
aggggaagagggggggtctcgacccatttactaatctccccttaaatctg
ttctcgatccctctcttcttcgttatcagCAAGCAATGTCAACCCCTTCC
CTTCTGGCGGCGCGTGGTACGCCTGCGTCTCTTCGCCCTCCTCTGCCTCG
CGTTGGCTGTGCCAGCCTTGGTCTCGCGCGTCGTCACCCTGCGAACATAC
TGCCACTTAAATGGAAAAATCGAGGAGGAGGTGGAGGAGGGGAGTGCGTT
CAAGgtaggaaagggtgagggaggggagggaggggaagggtggctagacc
gaatgacgccgtattctttcactcacgatcttgctctttccttctgcatt
tcctacatttccctccctacacccataccctccctttttatgccttccct
cctagGCCTGCACAAGTGCTCGCATGACCAACACAAGTGTCATGGCCGTC
GTGTACGCCGTCCTGGGGGTGTCCATGGTCCAGgtcagtgaggggggggg
gggagggagcggggaggaggaaaggcgcgcgggccggtggattgagggaa
cgttaaaagggatgatagctagcttgcaccatggctgatgatgtaggcaa
aggaagggcaggctaagggtctgtatgtccaacacaggccacttcctcat
ccttgtcacaccctctttgctttccttcatcccctccctccctcctttcc
ttctttagGCGCTCATCGAGCTCGAGGCCCTGACCAAGTGGCGCTACCAG
TACCAGTGCAATCCTTGCTCCTATAACCGGCCCTTCCTTCCATCCACTCT
TCCTCCATACGTCTCCGCATCATCCTCCATCTCCACCTCTGCGTGCTCCC
TGTCTTCCTCGGCAAACAAAGAGGGCGGGGATGAGGAAGGGGACGAAGGT
CTGCATTCAGCGCGCACCGTTTACGATGATAATCGTGCCTTATTTGGAGA
TGCCACATTTTATGAAGATGGTACCTCTCCTTCTCCTGATGGCTCTCTCC
CTCCCCCCCTCACTCCTTCCCCGCCAGTGGGAAAAGGCGTAATGGGAAGC
AGTGAGCGGAGCGCATTTTCATCCTACGTGGCTGGGAGCTGTGTGTGAGT
TTACGGGAAGACAGGAAAAAGCGGGGAAATCAGCGGAAGTGTGTATTATT
TCAATGCAACAAGCAATTGACAAGCAAAAAAGAAGAATGAGATTGTCTTC
GCGGCCTGTGTGTCTGCGAGTGTCGTTATCTT
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protein sequence of NO25G02050.1

>NO25G02050.1-protein ID=NO25G02050.1-protein|Name=NO25G02050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=305bp
MDLCSPSRAPLRQRKLSPMAAGVDTEETRLLRVIGLCTASILLLDIWAWI
SPGMLARSGTEHTVSDFDPSSFFYLFPFTLHALAGLWFFTRKQCQPLPFW
RRVVRLRLFALLCLALAVPALVSRVVTLRTYCHLNGKIEEEVEEGSAFKA
CTSARMTNTSVMAVVYAVLGVSMVQALIELEALTKWRYQYQCNPCSYNRP
FLPSTLPPYVSASSSISTSACSLSSSANKEGGDEEGDEGLHSARTVYDDN
RALFGDATFYEDGTSPSPDGSLPPPLTPSPPVGKGVMGSSERSAFSSYVA
GSCV*
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Synonyms
Publications