NO25G02040, NO25G02040 (gene) Nannochloropsis oceanica

Overview
NameNO25G02040
Unique NameNO25G02040
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1667
Alignment locationchr25:639461..641127 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:639461..641127 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO25G02040 vs. NCBI_GenBank
Match: XP_005854050.1 (hypothetical protein NGA_0110802 [Nannochloropsis gaditana CCMP526] >XP_005855218.1 hypothetical protein NGA_0110801 [Nannochloropsis gaditana CCMP526] >EKU21140.1 hypothetical protein NGA_0110801 [Nannochloropsis gaditana CCMP526] >EKU22309.1 hypothetical protein NGA_0110802 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 176.8 bits (447), Expect = 9.300e-41
Identity = 92/152 (60.53%), Postives = 99/152 (65.13%), Query Frame = 0 
Query:    1 MDEPTVWTRSRSSGGGQGRGHSEGDSNDWAIATAGPFQERVLIPRVWHSAEAKPDXXXXXXXXXXXXXXXXXXXXXXGGDRRGGYKCGRCGQPKKGHTCTNKPRLRTAFVETAETDVQSEMDPTMVLRNLDTKLQGFPESYGLTFRWAPSTA 153
            M  P VWTRS S GG   RGHS+  S DWA     PFQER+ IPR W   EAKP+                       GDRRGGYKCGRCGQPKKGH CTNKPRLR AFVET E ++Q+E D  MVLR LDTKLQG+PESYGLTFRWAPS A
Sbjct:    1 MANPEVWTRSGSGGG--LRGHSDA-SPDWAPGAPVPFQERIRIPRAWQPGEAKPE----NDSDNEEDRPAAGTSKGKSGDRRGGYKCGRCGQPKKGHVCTNKPRLRAAFVETTEVEIQAERDAEMVLRRLDTKLQGYPESYGLTFRWAPSAA 145
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BLAST of NO25G02040 vs. NCBI_GenBank
Match: EWM21716.1 (chalcone isomerase-like protein [Nannochloropsis gaditana])

HSP 1 Score: 176.8 bits (447), Expect = 9.300e-41
Identity = 92/152 (60.53%), Postives = 99/152 (65.13%), Query Frame = 0 
Query:    1 MDEPTVWTRSRSSGGGQGRGHSEGDSNDWAIATAGPFQERVLIPRVWHSAEAKPDXXXXXXXXXXXXXXXXXXXXXXGGDRRGGYKCGRCGQPKKGHTCTNKPRLRTAFVETAETDVQSEMDPTMVLRNLDTKLQGFPESYGLTFRWAPSTA 153
            M  P VWTRS S GG   RGHS+  S DWA     PFQER+ IPR W   EAKP+                       GDRRGGYKCGRCGQPKKGH CTNKPRLR AFVET E ++Q+E D  MVLR LDTKLQG+PESYGLTFRWAPS A
Sbjct:    1 MANPEVWTRSGSGGG--LRGHSDA-SPDWAPGARVPFQERIRIPRAWQPGEAKPE----NDSDNEEDRPAAGTSKGKSGDRRGGYKCGRCGQPKKGHVCTNKPRLRAAFVETTEVEIQAERDAEMVLRRLDTKLQGYPESYGLTFRWAPSAA 145
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BLAST of NO25G02040 vs. NCBI_GenBank
Match: OEU13078.1 (hypothetical protein FRACYDRAFT_243594 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 68.9 bits (167), Expect = 2.700e-8
Identity = 34/64 (53.12%), Postives = 39/64 (60.94%), Query Frame = 0 
Query:   82 RGGYKCGRCGQPKKGHTCTNKPRLR----TAFVETAETDVQSEMDPTMVLRNLDTKLQGFPESY 142
            RG YKCGRCG PKKGH C  +P+L         E     +Q EMD  M LR L+ K+QGFPESY
Sbjct:  296 RGSYKCGRCGVPKKGHVCPYQPKLTRKVGEPLPEMRSAAIQVEMDEFMTLRRLNLKIQGFPESY 359
The following BLAST results are available for this feature:
BLAST of NO25G02040 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
XP_005854050.19.300e-4160.53hypothetical protein NGA_0110802 [Nannochloropsis ... [more]
EWM21716.19.300e-4160.53chalcone isomerase-like protein [Nannochloropsis g... [more]
OEU13078.12.700e-853.13hypothetical protein FRACYDRAFT_243594 [Fragilario... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL047nonsL047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR045ncniR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006420NSK006420Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G02040.1NO25G02040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|221295gene_8828Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G02040.1NO25G02040.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G02040 ID=NO25G02040|Name=NO25G02040|organism=Nannochloropsis oceanica|type=gene|length=1667bp
ATGGACGAACCGACTGTATGGACCAGAAGCAGAAGCAGCGGGGGAGGCCA
GGGAAGAGGGCACTCAGAAGGAGACAGCAACGATTGGGgtaagatggagg
gacgataagacgtcaaagacggggaaggcgtgatcgaaaaagtagagagg
attgagagagcctttttgatggagagtgcgagagaagcggggaagtagtg
gactggcgctgtattgtggggttgtgtatcgcccctctgtctgccactct
atgtacacgtgtcggagtacggccatctcgcaccaccatcacctatgctg
cacgactgctcgcattaattgtaacctttcgttcatattgtccatgagat
catcacctgtctcatccctcctccctctttccttcccctcctttctcagC
CATTGCCACTGCTGGTCCTTTCCAAGAGCGCGTTCTCATTCCCCGCGTCT
GGCACTCCGCCGAAGCCAAGCCCGACAATGACAGCGACGGGGAGGAGGAC
AGACACAGCGTGAGCAACAGCAACAGTGGTAGCAAAAgtgagtggaggaa
gggagtttgagggaaggagggggaagaagggtctgtggcatctgatctgt
gttacttatctggcaccttgtcgctttccatccactcattttctcctgcc
ctccttccaccccagGCAAAGGCGGAGACCGTCGGGGCGGCTACAAATGC
GGCCGGTGCGGGCAGCCAAAAAAGGGTCACACGTGCACCAACAAACCGAG
ATTGCGCACGGCCTgtacgtgttgaagagggagggggaggagggaatggg
gacgagggggatcaacaagggagggatggtaggtaggactgaatagggca
gagtctcgctacagatatcttctgtatatatctcatgatcaagtctctcg
gagtctgtttcgatcgtcactaattttcaccctcctctgccatcctcctt
ccctgcccttccttccctccctccctccctcccttctagTCGTGGAAACG
GCCGAGACGGACGTGCAATCAGAGATGGACCCCACCATGGTCCTCAGAAA
TCTTGACACTAAGCTGCAAGgtagggagggtggaagtagagggtgggatc
ggagggtaaccggtaaccgtaaccgcgggaggattgagtagaactggttt
aaactcccggagtagagattcgacttaaaatttaaccctgtcctttcctt
tcttacttcccccactttccctcaatgcccctctctgtttagGCTTCCCA
GAAAGCTATGGCTTGACCTTTCGATGGGCCCCCTCCACCGCCTCCCTATA
CGCTGCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGGAAGGGCACATGGTGACCTCGCCATTGCAGCACTCCCCG
CACCAACAACACCAACACCAACACCAACACCAACAGCAGCATCCTCTATA
TGTGCACCAAGTAGGAGTGGGGGCGGAGGAAGCACCGTATTATGCACAGG
GGCAGCAGCAGCTTCAGCAGCCTGCAGGGTTAGGTGGAGGAGGAGTTGAG
GGAGGAGGCGGTTACCACGCGTACTATCCGCAAACAGGAGTAGTAGGAGT
TGGAGGGGGAGAAGGAGTAGTAGAAAGAGGGGGAGAACAAAGCGGACAAC
AACGCCGGTTTTATTGA
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protein sequence of NO25G02040.1

>NO25G02040.1-protein ID=NO25G02040.1-protein|Name=NO25G02040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=277bp
MDEPTVWTRSRSSGGGQGRGHSEGDSNDWAIATAGPFQERVLIPRVWHSA
EAKPDNDSDGEEDRHSVSNSNSGSKSKGGDRRGGYKCGRCGQPKKGHTCT
NKPRLRTAFVETAETDVQSEMDPTMVLRNLDTKLQGFPESYGLTFRWAPS
TASLYAAQQQQQQQQQQQQQQQQQQEGHMVTSPLQHSPHQQHQHQHQHQQ
QHPLYVHQVGVGAEEAPYYAQGQQQLQQPAGLGGGGVEGGGGYHAYYPQT
GVVGVGGGEGVVERGGEQSGQQRRFY*
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Synonyms
Publications