NO25G01800, NO25G01800 (gene) Nannochloropsis oceanica

Overview
NameNO25G01800
Unique NameNO25G01800
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2756
Alignment locationchr25:538424..541179 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:538424..541179 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO25G01800 vs. NCBI_GenBank
Match: EWM21689.1 (hypothetical protein Naga_100939g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 340.5 bits (872), Expect = 8.200e-90
Identity = 203/249 (81.53%), Postives = 226/249 (90.76%), Query Frame = 0 
Query:   51 AAVHLTRRSAAFIELGE------XXXXXXXXXXXXXXXXXXXXXXXXXITERAWNTSTLGALPANMDILSKSICDCALTAIANGEMGLTVHAGGEFDARNKYHDPYQLTSLVVGMAAKLSVLGPTRVLFAGPEALETSLNHMRQLIQLEAKKEQEELATIKQVRRQVQAKFPGTKLPEIPSEMAKEKMARNRERQRLAERVRFGSLLGSYRLTGDSVTDLETAPSMVFGEVDLEEDRLFIVVVPGNSPV 294
            A   +TRRSAAFIELGE      XXXXXXXXXXXXXXXXXXXXXXXXXITERAWNTSTLG LP++++ LS SICDCALTAIANGEMGLTVHAGGEFD RN+YHDPYQLTSLVVG+A KLSVLG TRVLF+GPEALE+SL+HMRQ IQLEA+KEQEELAT+KQVR++VQAKFPGTKLPE+P+EMAKEK+ R RERQRLA+RV FGSLLG YRLTGD++ DLETAPS VFGE+DL++DRLFIVV PGNSPV
Sbjct:   42 AVAPVTRRSAAFIELGEKTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXITERAWNTSTLGTLPSDLESLSSSICDCALTAIANGEMGLTVHAGGEFDPRNRYHDPYQLTSLVVGLAGKLSVLGATRVLFSGPEALESSLDHMRQFIQLEAQKEQEELATVKQVRQEVQAKFPGTKLPEMPAEMAKEKLVRLRERQRLADRVLFGSLLGDYRLTGDNMMDLETAPSRVFGEIDLDQDRLFIVVAPGNSPV 290
The following BLAST results are available for this feature:
BLAST of NO25G01800 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21689.18.200e-9081.53hypothetical protein Naga_100939g1, partial [Nanno... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR045ncniR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G01800.1NO25G01800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|220060gene_8791Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100939g1gene8740Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G01800.1NO25G01800.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G01800 ID=NO25G01800|Name=NO25G01800|organism=Nannochloropsis oceanica|type=gene|length=2756bp
ATGCCGATCCCTCCATCACTGACGGCGCCCCCTTCCTACCCCACGTCCGT
CTTCATCCTCCTCGCCCTGCTCTTCACCCTCACCACCACCTTGACCAATG
CATTCCTCCCACCCTCGTCCGCCCCTACCTCTCTCTCCTCTTCCCGTACG
GCCGCGGTCCATCTCACCCGTCGCTCGGCTGCCTTCATCGAACTGGGGGA
AAAGACTCGCGGGGGCGGGGGTAGCGATGAGGAGGGTGGCACTGGAGGAG
GGGGAGGGGGAGGGAGGGCAACAGTGATTACGGAGAGGGCATGGAATACA
AGCACCCTTGGGGCCTTGCCGGCGAACATGGACATCTTGAGCAAGTCGgt
gagtgatgaggagggaaaagagggagggatggaagggagggaggggaagg
ggaaagcacgattgtagtattttggatgcgtatttttctgttgcgagtct
gccttcgtcccccacctcctccaaccacaacccgtcatcaccatccctcc
tcctccacctccctccctccctcccaccagATCTGCGACTGCGCCCTGAC
GGCCATCGCCAATGGGGAGATGGGCCTGACAGTGCACGCCGGCGGCGAAT
TCGACGCTCGCAACAAGTACCACGACCCGTACCAGCTCACGTCCCTGGTG
GTGGGCATGGCTGCCAAACTGTCCGTACTTGGACCTACCCGTGTCTTGTT
CGCAGGCCCGGAGGCCCTCGAGACGAGCCTCAACCACATGCGGCAATTGA
TTCAGCTGgtgcgcgcccttcctttcttcctcttctccctctcgttcctt
tgtgtaatctcgcactctctctcactcagcctggtcttggggtgtttctc
gtgctgttccaccagggggcgagtagacccacgacgacccctcacaaatt
cctccctccctccctcccccctctctcgcgccctcctcttccttcctcaa
caccagGAGGCCAAAAAAGAGCAAGAAGAGCTAGCGACCATCAAGCAGGT
CCGTCGACAGGTGCAGGCCAAATTCCCGGGAACGAAACTGCCGGAAATTC
CCTCGGAGATGGCGAAGGAGAAGgtgagggagggagggaggtgcaggcca
agcatgcatttacggagagaggcagcgtttggccagggggtggagaagga
cgcgctaaaacatgttacatttactcttatacttacatacaccaccacca
ctaccacttaagcactcgccctcttgcctactcactccctctctaactta
cactcttacacccttacactctttcatccagATGGCTCGGAACCGAGAGA
GGCAGCGTTTGGCCGAGCGCGTTCGCTTCGGCTCTCTTCTAGGGAGTTAC
CGTCTGACAGgtacgtccctcccgccctctcttcctccctccctccctcc
ctccctccctccttccctgcctccacgccctaggtcgggacaccaaacca
aagcgcggaaccctgacatcccttcctccctccctccctccctccccccg
tcccccagGCGACAGTGTGACGGACCTAGAGACGGCCCCCTCCATGGTAT
TTGGCGAGGTGGATCTCGAGGAGGACAGACTCTTCATCGTCGTGGTGCCG
GGGAACAGCCCAGTGgtacctccctccctccctccctccctccctccctt
gtctcccaacccacgcccgcccacctcaccctccctccctctctccctcc
ctccctccctccctcaggaagccttggcggtgcggaagctcatcagGGCG
TCGCATCAGGGACAGCCTATCCTCGTCCTCAATCACCTCTTCGACCCCGA
GCCCCTGGAGATGgtgcgtccctccctccctcccttccttccttccttcc
tccaggtgtccctccctcgttaatattcaacatgtcttcccttctcaccc
tccccttcgtcccccccctccctcccgcccgcccctcacagTCCATCTTC
ACCGCAGCCTACCACCTGGACATTTGCAAGCTCAAGCGACTCCGCCCCCC
TCCCTCCCTCCCTCTGCCTTCGGACCTCTCTTCCTCCTTCCCTCCCCCCC
CACCCCCACCGAGCAAGCCCAGGAAGAGAAGGAGGGAGGGGCCAACCCCT
CCTCCTCCCCGCCCTCCTCCTTGACCTCGCGGGGACTCGAGGAGATCGAA
ACGGTCTTGGTCCGAAAATTCCCCAACCCCTGGCAGCTCTATGGCGCCTT
TGAAGgtacctccctccctccctccctccctccctccctccctccctgct
tccatctgtcgtgtgctgacccgcctttccctcctttcctccctccttct
cccctccctccctccctccttccctccctccccctcagAATCCTCCACCT
CCCACGAGGAGGACAGTTTCGAGCTGGTCGAGACGTACGAGCAAATGCCT
TCCCCTCAGGCGGTGCGGGAGCGAGTCATGCAGgtacgccctccctccct
ccctccctccctccctccctccctcttcacctgtccctcttttttaaaga
tatagaagctcttgcgtccagccagccctcctctccttcctccctcccaa
ccccctctcggtactcttcctctgtctcactccctctccctccctctcaa
tcacccttccctccctccctccctccctccctccctccctcccttcctcc
cgccctccctccctccttccagGTGGCGAATGACCGCTCCCCTCCTGCTC
GTCGGCGCTCCTCCATTCCTCCCCCTCCCCCTCCCCCGTCCACTGCCTCC
ATTTAA
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protein sequence of NO25G01800.1

>NO25G01800.1-protein ID=NO25G01800.1-protein|Name=NO25G01800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=463bp
MPIPPSLTAPPSYPTSVFILLALLFTLTTTLTNAFLPPSSAPTSLSSSRT
AAVHLTRRSAAFIELGEKTRGGGGSDEEGGTGGGGGGGRATVITERAWNT
STLGALPANMDILSKSICDCALTAIANGEMGLTVHAGGEFDARNKYHDPY
QLTSLVVGMAAKLSVLGPTRVLFAGPEALETSLNHMRQLIQLEAKKEQEE
LATIKQVRRQVQAKFPGTKLPEIPSEMAKEKMARNRERQRLAERVRFGSL
LGSYRLTGDSVTDLETAPSMVFGEVDLEEDRLFIVVVPGNSPVGVASGTA
YPRPQSPLRPRAPGDVHLHRSLPPGHLQAQATPPPSLPPSAFGPLFLLPS
PPTPTEQAQEEKEGGANPSSSPPSSLTSRGLEEIETVLVRKFPNPWQLYG
AFEESSTSHEEDSFELVETYEQMPSPQAVRERVMQVANDRSPPARRRSSI
PPPPPPPSTASI*
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Synonyms
Publications