NO25G01640, NO25G01640 (gene) Nannochloropsis oceanica

Overview
NameNO25G01640
Unique NameNO25G01640
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length825
Alignment locationchr25:458939..459763 +

Link to JBrowse

Properties
Property NameValue
DescriptionCarboxyl-terminal protease
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:458939..459763 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008233peptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
Homology
BLAST of NO25G01640 vs. NCBI_GenBank
Match: EWM21667.1 (carboxyl-terminal protease, partial [Nannochloropsis gaditana])

HSP 1 Score: 162.2 bits (409), Expect = 2.400e-36
Identity = 88/161 (54.66%), Postives = 109/161 (67.70%), Query Frame = 0
Query:    1 MFFDFANEWAKTHTYVLGEGLGEEGPSLVTDATYEDFKQFVKKKEKEGNFRMDLLFSGSLEPLQEALTVTTYDNAEKELEGLRXXXXXXXXXXXXXXXXXXXXXXGQAILARYLPESVLRRLALEGDPQVKAAIEAVKEGGRE-EGREGGIGNKYWQVLKG 161
            +FFDFANEW+  HTY  G G+ +EG  LVTDATY++F  +V +KEKEG+ R D+LF+G+LEPL+ AL  T Y  A K L+ L+                       QAILARY PES+LRRLALEGDPQVK A+EAVKEGGRE +G+EG    +YWQVL+G
Sbjct:  133 VFFDFANEWSSKHTYTPGAGV-QEGRPLVTDATYQEFVDYVGRKEKEGSVRYDVLFNGALEPLRTALDATEYKKAGKGLDALKAAVREEVSREFNTHKAQIKEEVEQAILARYQPESLLRRLALEGDPQVKVAVEAVKEGGREGKGKEG----RYWQVLQG 288          
BLAST of NO25G01640 vs. NCBI_GenBank
Match: CBJ29210.1 (carboxy-terminal peptidase [Ectocarpus siliculosus])

HSP 1 Score: 85.9 bits (211), Expect = 2.200e-13
Identity = 48/140 (34.29%), Postives = 72/140 (51.43%), Query Frame = 0
Query:    2 FFDFANEWAKTHTYVLGEGLGEEGPSLVTDATYEDFKQFVKKKEKEGNFRMDLLFSGSLEPLQEALTVTTYDNAEKELEGLRXXXXXXXXXXXXXXXXXXXXXXGQAILARYLPESVLRRLALEGDPQVKAAIEAVKEGG 142
            +FDFA +W KTHT+        +G  +VTD    DFK FV K++KEG + +  ++   LE L+  L  +   + EK +E L                        +AIL+RYLPES++ R  L+ DPQ + A+E V++ G
Sbjct:  730 YFDFAGQWTKTHTF--------KGTDVVTDGVLRDFKNFVYKRQKEGTYDLAAIYGPQLESLESILEDSNLGHYEKLVEPLPKKLTQEMLTAFDSRKERIRASLEEAILSRYLPESMVLRKQLDRDPQFQVALELVQDKG 861          
BLAST of NO25G01640 vs. NCBI_GenBank
Match: XP_002295819.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >ACI64536.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 80.1 bits (196), Expect = 1.200e-11
Identity = 45/140 (32.14%), Postives = 74/140 (52.86%), Query Frame = 0
Query:    1 MFFDFANEWAKTHTYVLGEGLGEEGPSLVTDATYEDFKQFVKKKEKEGNFRMDLLFSGSLEPLQEALTVTTYDNAEKELEGLRXXXXXXXXXXXXXXXXXXXXXXGQAILARYLPESVLRRLALEGDPQVKAAIEAVKEG 141
            M+ ++A EW+K H               V DATY+DF+++V+K++K+G+ ++++L+   L+ LQ+ L  + + +A +ELE LR                       Q ILARYLPES+L    L+ D QV+   + +K G
Sbjct:  786 MYSNYAAEWSKHHELT--------DNFKVDDATYKDFQRYVEKRQKDGDIKLEVLYESQLKELQKKLKASKFASASRELEKLRADIIAETKKDFTTYRNEVVEDLEQNILARYLPESMLIERGLKSDVQVEETAKMLKNG 917          
BLAST of NO25G01640 vs. NCBI_GenBank
Match: XP_002184343.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC44092.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 77.4 bits (189), Expect = 7.600e-11
Identity = 48/137 (35.04%), Postives = 69/137 (50.36%), Query Frame = 0
Query:    1 MFFDFANEWAKTHTYVLGEGLGEEGPSLVTDATYEDFKQFVKKKEKEGNFRMDLLFSGSLEPLQEALTVTTYDNAEKELEGLRXXXXXXXXXXXXXXXXXXXXXXGQAILARYLPESVLRRLALEGDPQVKAAIEAV 138
            MF ++A EW+KTH       + E+         Y +F  FV +K+K G+  +D L+S  L  L++AL  + Y  AEKE+E L+                       Q ILARYLPES+L    ++ D QV+AAI+ V
Sbjct:  669 MFNEYAAEWSKTHMLTNNFAVDED--------IYRNFIAFVDQKQKTGDIELDALYSRPLSDLKKALKRSGYKGAEKEVEVLQANIVREVQKDFDKYRKDIKEDISQGILARYLPESMLIERGMKNDAQVEAAIKLV 797          
BLAST of NO25G01640 vs. NCBI_GenBank
Match: GAX21681.1 (hypothetical protein FisN_29Hh122 [Fistulifera solaris])

HSP 1 Score: 73.6 bits (179), Expect = 1.100e-9
Identity = 43/144 (29.86%), Postives = 74/144 (51.39%), Query Frame = 0
Query:    1 MFFDFANEWAKTHTYVLGEGLGEEGPSLVTDATYEDFKQFVKKKEKEGNFRMDLLFSGSLEPLQEALTVTTYDNAEKELEGLRXXXXXXXXXXXXXXXXXXXXXXGQAILARYLPESVLRRLALEGDPQVKAAIEAVKEGGREE 145
            +F DFA  W++ H          +   +V D TY+ F  +VK+++++GN  ++ L+S  L  L++ L  + Y  AEK +E L+                       Q+IL+RYLPES+L    ++ D QV+AA++ ++  G+ E
Sbjct:  580 IFNDFAALWSQNHKLTDYVNADTKKLDVVNDDTYKQFIAYVKEQQQQGNLELESLYSKPLTDLKKTLKQSGYLGAEKSVEQLQARIVRDIESDFNKYRKDLMEDLSQSILSRYLPESMLIERGVQNDVQVQAAMQLLQTPGKYE 723          
BLAST of NO25G01640 vs. NCBI_GenBank
Match: GAX14901.1 (carboxyl-terminal processing protease [Fistulifera solaris])

HSP 1 Score: 72.8 bits (177), Expect = 1.900e-9
Identity = 43/144 (29.86%), Postives = 73/144 (50.69%), Query Frame = 0
Query:    1 MFFDFANEWAKTHTYVLGEGLGEEGPSLVTDATYEDFKQFVKKKEKEGNFRMDLLFSGSLEPLQEALTVTTYDNAEKELEGLRXXXXXXXXXXXXXXXXXXXXXXGQAILARYLPESVLRRLALEGDPQVKAAIEAVKEGGREE 145
            +F DFA  W++ H          +   +V D TY+ F  +VK+++++GN  ++ L+S  L  L++ L  + Y  AEK +E L+                       Q+IL+RYLPES+L    ++ D QV+AA+  ++  G+ E
Sbjct:  605 IFNDFAALWSQNHKLTDYVNADTKKLDVVNDDTYKQFIAYVKEQQQQGNLELESLYSKPLTDLKKTLKQSGYLGAEKSVEQLQARIVRDIESDFNKYRKDLMEDLSQSILSRYLPESMLIERGVQNDVQVQAAMRLLQTPGKYE 748          
BLAST of NO25G01640 vs. NCBI_GenBank
Match: EJK46335.1 (hypothetical protein THAOC_34996 [Thalassiosira oceanica])

HSP 1 Score: 72.0 bits (175), Expect = 3.200e-9
Identity = 53/137 (38.69%), Postives = 83/137 (60.58%), Query Frame = 0
Query:    2 FFDFANEWAKTHTYVLGEGLGEEGPSLVTDATYEDFKQFVKKKEKEGNFRMDLLFSGSLEPLQEALTVTTYDNAEKELEGLRXXXXXXXXXXXXXXXXXXXXXXGQAILARYLPESVLRRLALEGDPQVKAAIEAVK 139
            + DFA EW+KTH               V + TY+DF++F++K++  G+ ++++L+   L  LQ+ L  + +D++ +EL+ LR        XXXXXXXXXXXXXX Q IL+RYLP+S++    L+ D QV    + +K
Sbjct:  666 YADFAAEWSKTHELT--------DNFKVDETTYQDFQRFIQKRQDSGDMKLEVLYDLPLRDLQKKLKASKFDSSSRELDKLRADIIKDVKXXXXXXXXXXXXXXXQTILSRYLPDSMVIARGLKNDVQVAETAKLLK 794          
BLAST of NO25G01640 vs. NCBI_GenBank
Match: OEU15734.1 (Peptidase_S41-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 68.6 bits (166), Expect = 3.600e-8
Identity = 45/164 (27.44%), Postives = 81/164 (49.39%), Query Frame = 0
Query:    4 DFANEWAKTHTYVLGEGLGEEGPSLVTDATYEDFKQFVKKKEKEGNFRMDLLFSGSLEPLQEALTVTTYDNAEKELEGLRXXXXXXXXXXXXXXXXXXXXXXGQAILARYLPESVLRRLALEGDPQVKAAI----------EAVKEGGREEGREGGIGNKYWQV 158
            +FA++W++   Y L           VTD  Y +F+ FV+ K K G+ +++ L++G+L+ L+ AL+ + Y ++E+E++ L+                        +IL+RY+PES+L + +L+ D QV+ AI          + + +G   EG  G I      V
Sbjct:  395 EFASQWSQ--KYELTNNFE------VTDDIYREFQDFVEVKVKGGDLKLEALYAGALDDLKRALSQSGYKSSEREVDQLKTQIVKESKNDFEKYKKEIKEDIATSILSRYIPESMLMKRSLKTDDQVQEAIKLLANDKSFSKILAKGSTNEGSNGSINKNSMSV 550          
The following BLAST results are available for this feature:
BLAST of NO25G01640 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 8
Match NameE-valueIdentityDescription
EWM21667.12.400e-3654.66carboxyl-terminal protease, partial [Nannochlorops... [more]
CBJ29210.12.200e-1334.29carboxy-terminal peptidase [Ectocarpus siliculosus... [more]
XP_002295819.11.200e-1132.14predicted protein [Thalassiosira pseudonana CCMP13... [more]
XP_002184343.17.600e-1135.04predicted protein [Phaeodactylum tricornutum CCAP ... [more]
GAX21681.11.100e-929.86hypothetical protein FisN_29Hh122 [Fistulifera sol... [more]
GAX14901.11.900e-929.86carboxyl-terminal processing protease [Fistulifera... [more]
EJK46335.13.200e-938.69hypothetical protein THAOC_34996 [Thalassiosira oc... [more]
OEU15734.13.600e-827.44Peptidase_S41-domain-containing protein [Fragilari... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL045nonsL045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL044nonsL044Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR045ncniR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR072ngnoR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G01640.1NO25G01640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G01640.1NO25G01640.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G01640 ID=NO25G01640|Name=NO25G01640|organism=Nannochloropsis oceanica|type=gene|length=825bp
ATGTTTTTCGATTTCGCCAACGAATGGGCCAAGACGCATACGTACGTGCT
AGGGGAGGGCCTGGGGGAGGAGGGCCCGTCGCTGGTGACGGATGCGACGT
ACGAGGATTTCAAGCAGTTTGTGAAAAAGAAGGAGAAGGAGGGGAACTTC
CGGATGGACCTGTTGTTTTCCGGGTCTCTGGAGCCGTTACAGGAGGCGTT
AACTGTAACGACGTACGACAATGCGGAGAAGGAATTGGAGGGGCTGAGGG
AGGCGGTGAGGGAGGAGGTGATGAATGAGTTCGTGACGGAGAAGAAACAG
ATCAAGGAGGAGGTGGGGCAGGCGATCCTGGCCCGCTACCTCCCGGAAAG
CGTGCTGAGGAGATTGGCGCTGGAGGGGGATCCGCAGGTGAAGGCGGCCA
TCGAGGCAGTGAAGGAGGGAGGGAGGGAGGAAGGGAGGGAAGGGGGTATC
GGGAACAAGTATTGGCAGGTGTTGAAGGGAAGAGGTGGGGGAGGGAGGAA
GGAGGGGGGCGGGAGGGAGGGAGGGAAGAAGGGAGAGGTGGTGGCAGCCA
TGGAGAAAGAGGTGTATGAGAAAGAGAGGAAGTTACGGCTTAACGGAAAG
GTGGTGTGGTATGGAGGGAGTGAGGGAGGGAGGGAGGAAAAAGGGCGACA
CGGACGAGCGCATCAGAATTCGGAGCAAGAGCCGCAGATACTGCGAAAAC
AGCAGCAGCAGCAGCAGCAGCAGCCACCGCGATGGGTGTCCCCCTCTTCT
TCTCGCCGCTCCTCTGCCCCGCCTTCCTCGCCTGCTGCGCGTGTGCCGGT
AGGAATGGATCGCGCTTGGTCTTGA
back to top

protein sequence of NO25G01640.1

>NO25G01640.1-protein ID=NO25G01640.1-protein|Name=NO25G01640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=275bp
MFFDFANEWAKTHTYVLGEGLGEEGPSLVTDATYEDFKQFVKKKEKEGNF
RMDLLFSGSLEPLQEALTVTTYDNAEKELEGLREAVREEVMNEFVTEKKQ
IKEEVGQAILARYLPESVLRRLALEGDPQVKAAIEAVKEGGREEGREGGI
GNKYWQVLKGRGGGGRKEGGGREGGKKGEVVAAMEKEVYEKERKLRLNGK
VVWYGGSEGGREEKGRHGRAHQNSEQEPQILRKQQQQQQQQPPRWVSPSS
SRRSSAPPSSPAARVPVGMDRAWS*
back to top
Synonyms
Publications