NO25G01620, NO25G01620 (gene) Nannochloropsis oceanica

Overview
NameNO25G01620
Unique NameNO25G01620
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1334
Alignment locationchr25:455937..457270 +

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Properties
Property NameValue
DescriptionCarboxyl-terminal protease
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:455937..457270 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029045ClpP/crotonase-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0019538protein metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO25G01620 vs. NCBI_GenBank
Match: EWM21670.1 (carboxyl-terminal protease, partial [Nannochloropsis gaditana])

HSP 1 Score: 110.5 bits (275), Expect = 1.000e-20
Identity = 56/70 (80.00%), Postives = 62/70 (88.57%), Query Frame = 0
Query:  158 PPSLLQPITLFENILLEIDRGYVEEVDSSKLFEAAVESMLATLDPYTEYEGQQLAQDMREAVSGRYGGVG 228
            PPSLLQP+TLFENILLEIDRGYVEEVD  KLFE+AVESML++LDPYTE+EG+QLAQDMRE V G   G G
Sbjct:  288 PPSLLQPVTLFENILLEIDRGYVEEVDDQKLFESAVESMLSSLDPYTEFEGEQLAQDMRE-VGGEGRGEG 356          
BLAST of NO25G01620 vs. NCBI_GenBank
Match: CBJ29210.1 (carboxy-terminal peptidase [Ectocarpus siliculosus])

HSP 1 Score: 104.0 bits (258), Expect = 9.600e-19
Identity = 49/76 (64.47%), Postives = 61/76 (80.26%), Query Frame = 0
Query:  159 PSLLQPITLFENILLEIDRGYVEEVDSSKLFEAAVESMLATLDPYTEYEGQQLAQDMREAVSGRYGGVGLVIAGSK 235
            P L + +TLFEN+L++ID+GYVEEV+  +L E AV SML TLDPYTEY+  Q A D++E VSGRYGGVGLVI+G K
Sbjct:  280 PGLRKSLTLFENVLVDIDQGYVEEVNPERLLETAVGSMLRTLDPYTEYQNNQAAADLKETVSGRYGGVGLVISGGK 355          
BLAST of NO25G01620 vs. NCBI_GenBank
Match: XP_002184343.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC44092.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 93.6 bits (231), Expect = 1.300e-15
Identity = 44/74 (59.46%), Postives = 59/74 (79.73%), Query Frame = 0
Query:  160 SLLQPITLFENILLEIDRGYVEEVDSSKLFEAAVESMLATLDPYTEYEGQQLAQDMREAVSGRYGGVGLVIAGS 234
            SL QP+TLFE IL ++++ YVEEVD++KLFE  + +ML +LDPYTE+E  Q A  + E++ GRYGGVGLVIAG+
Sbjct:  210 SLSQPVTLFETILGDLEQAYVEEVDTNKLFETGIAAMLRSLDPYTEFEAAQEAVALTESIEGRYGGVGLVIAGT 283          
BLAST of NO25G01620 vs. NCBI_GenBank
Match: CEM05181.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 92.0 bits (227), Expect = 3.800e-15
Identity = 43/67 (64.18%), Postives = 54/67 (80.60%), Query Frame = 0
Query:  165 ITLFENILLEIDRGYVEEVDSSKLFEAAVESMLATLDPYTEYEGQQLAQDMREAVSGRYGGVGLVIA 232
            + LFE IL +++RGYVE+VD+ KLF  AV +ML +LDPYTE+E  Q A D+RE V+GRYGGVGLVIA
Sbjct:  232 VALFETILTDVERGYVEKVDTEKLFNTAVTAMLRSLDPYTEFENLQAASDLRENVAGRYGGVGLVIA 298          
BLAST of NO25G01620 vs. NCBI_GenBank
Match: GAX21681.1 (hypothetical protein FisN_29Hh122 [Fistulifera solaris])

HSP 1 Score: 91.3 bits (225), Expect = 6.400e-15
Identity = 40/73 (54.79%), Postives = 60/73 (82.19%), Query Frame = 0
Query:  161 LLQPITLFENILLEIDRGYVEEVDSSKLFEAAVESMLATLDPYTEYEGQQLAQDMREAVSGRYGGVGLVIAGS 234
            LLQP+TLFE IL ++D  YV+ VD+ +LF+  +++ML +LDPYTE+E ++ AQ++ E++ G+YGGVGLVIAG+
Sbjct:  127 LLQPVTLFETILSDLDSTYVDPVDTQQLFQTGIQAMLQSLDPYTEFEAKEEAQNVMESIDGKYGGVGLVIAGT 199          
BLAST of NO25G01620 vs. NCBI_GenBank
Match: XP_002295819.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >ACI64536.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 90.9 bits (224), Expect = 8.400e-15
Identity = 42/71 (59.15%), Postives = 57/71 (80.28%), Query Frame = 0
Query:  163 QPITLFENILLEIDRGYVEEVDSSKLFEAAVESMLATLDPYTEYEGQQLAQDMREAVSGRYGGVGLVIAGS 234
            QP+ LFE IL +++  YV++VD  KLFE  V++M ++LDPYTE+E +Q AQD+ E+VSG+YGGVGLVI GS
Sbjct:  285 QPVILFETILNDLNDAYVDDVDIQKLFETGVKAMTSSLDPYTEFESRQEAQDLEESVSGKYGGVGLVIRGS 355          
BLAST of NO25G01620 vs. NCBI_GenBank
Match: OEU15734.1 (Peptidase_S41-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 87.8 bits (216), Expect = 7.100e-14
Identity = 40/65 (61.54%), Postives = 52/65 (80.00%), Query Frame = 0
Query:  167 LFENILLEIDRGYVEEVDSSKLFEAAVESMLATLDPYTEYEGQQLAQDMREAVSGRYGGVGLVIA 232
            LFE IL ++DRGYV+ VD++KLFE  V +ML +LDPYTE+E ++ AQ M E + GRYGGVGLVI+
Sbjct:    2 LFETILADLDRGYVDPVDTNKLFETGVSAMLRSLDPYTEFEAREEAQQMNEGIMGRYGGVGLVIS 66          
BLAST of NO25G01620 vs. NCBI_GenBank
Match: EJK46335.1 (hypothetical protein THAOC_34996 [Thalassiosira oceanica])

HSP 1 Score: 84.7 bits (208), Expect = 6.000e-13
Identity = 43/96 (44.79%), Postives = 62/96 (64.58%), Query Frame = 0
Query:  163 QPITLFENILLEIDRGYVEEVDSSKLFEAAVESMLATLDPYTEYEGQQLAQDMREAVSGRYGGVGLVIAG---------SKPLVEKGSIVKKGGKE 250
            QP+ LFE IL +++  YV++VD  KLFE  V++M A+LDPYTE+E +  A ++ E+VSG+YGGVGLVI G           P+V     ++ GG +
Sbjct:  134 QPVILFETILNDLNNAYVDDVDIQKLFETGVKAMTASLDPYTEFESRTEAMELEESVSGKYGGVGLVIRGGMNLGDDEDDTPIVNNIEKIETGGSQ 229          
BLAST of NO25G01620 vs. NCBI_GenBank
Match: GAX14901.1 (carboxyl-terminal processing protease [Fistulifera solaris])

HSP 1 Score: 83.6 bits (205), Expect = 1.300e-12
Identity = 38/74 (51.35%), Postives = 59/74 (79.73%), Query Frame = 0
Query:  161 LLQPITLFENILLEIDRGYVEEVDSSKLFEAAVESMLATLDPYTEYE-GQQLAQDMREAVSGRYGGVGLVIAGS 234
            L QP+TLFE IL +++  YV+ VD+ +LF+  +++ML +LDPYTE+E  ++ AQ++ E++ G+YGGVGLVIAG+
Sbjct:  142 LFQPVTLFETILSDLETTYVDPVDTQQLFQTGIQAMLQSLDPYTEFEANKEEAQNVMESIDGKYGGVGLVIAGT 215          
BLAST of NO25G01620 vs. NCBI_GenBank
Match: XP_005705375.1 (carboxyl-terminal processing protease isoform 2 [Galdieria sulphuraria] >EME28855.1 carboxyl-terminal processing protease isoform 2 [Galdieria sulphuraria])

HSP 1 Score: 79.3 bits (194), Expect = 2.500e-11
Identity = 43/83 (51.81%), Postives = 54/83 (65.06%), Query Frame = 0
Query:  161 LLQPITLFENILLEIDRGYVEEVDSSKLFEAAVESMLATLDPYTEYEGQQLAQDMREAVSGRYGGVGLVIAGSKPLVEKGSIV 244
            L Q + LF  IL +I R YVE+VD  KLFE  V +ML +LDPYT++E    AQ+M     GRYGGVGLVIA  K + +K  I+
Sbjct:  135 LEQKVALFNIILEDIQRAYVEKVDVDKLFETGVNAMLGSLDPYTQFENHIEAQEMNVKAMGRYGGVGLVIA--KDIRDKDQII 215          
The following BLAST results are available for this feature:
BLAST of NO25G01620 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21670.11.000e-2080.00carboxyl-terminal protease, partial [Nannochlorops... [more]
CBJ29210.19.600e-1964.47carboxy-terminal peptidase [Ectocarpus siliculosus... [more]
XP_002184343.11.300e-1559.46predicted protein [Phaeodactylum tricornutum CCAP ... [more]
CEM05181.13.800e-1564.18unnamed protein product [Vitrella brassicaformis C... [more]
GAX21681.16.400e-1554.79hypothetical protein FisN_29Hh122 [Fistulifera sol... [more]
XP_002295819.18.400e-1559.15predicted protein [Thalassiosira pseudonana CCMP13... [more]
OEU15734.17.100e-1461.54Peptidase_S41-domain-containing protein [Fragilari... [more]
EJK46335.16.000e-1344.79hypothetical protein THAOC_34996 [Thalassiosira oc... [more]
GAX14901.11.300e-1251.35carboxyl-terminal processing protease [Fistulifera... [more]
XP_005705375.12.500e-1151.81carboxyl-terminal processing protease isoform 2 [G... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL045nonsL045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL044nonsL044Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR045ncniR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR072ngnoR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004265NSK004265Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G01620.1NO25G01620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100863g1gene8760Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G01620.1NO25G01620.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G01620 ID=NO25G01620|Name=NO25G01620|organism=Nannochloropsis oceanica|type=gene|length=1334bp
ATGATAAGGCGGAATGACGCCGCGCCTCCGATGCTGCGCCTTTTCCTGAT
GATTATTTCGACCTCCTGGTACTGCTGCACTGCGTTCCTGATCCTCCCGT
CACCCTCCTCCTTATCATCCTTACCGTCGGCTAGCCTCCTTGTCGAGCGT
CGGCTGAGCACCGCCTCTACTTCTGTCTGCGTGTGGAGCGGCAGGAAGAC
GAGGACGCGGCATGCCGCCTCCAACGACGACGGGGAGGACTCACCGAAGC
GAGGCTTCCTCCCCAACCTGTTCGGCGGCAGCAAAGGCAGCAAACGCGAC
TCCAAATCAGGCCTGCCAAGCAAGCGTCTCTCTTCCTCTTCTCGGGCCTC
CACCCCTACCCCGCCAACCAAGAAAAGCTTTGTCTGGCCCTCCCCCTCCT
CCTCTTCCTCCTCCCCCTCCCCACAAgtccgccccgcctcctcccgtttc
actaaaaattccaacgaagaccttgctgaggaagagccctcttcatcaac
cccttcctccttcttctccgacttgacccaacgtcttcaaacccccctcc
cccttggtcctatctttcaaaaattcgtcttcttctccatcggttttctc
gggggcggcgccagCGGCCTCCTCGTCCTCCTCTCCCCTTCCTCCCCCTC
ACCTCCCTCCCCCCCTCCCTCCTTCAACCCATCACCCTCTTTGAAAACAT
TTTGTTGGAGATCGACCGGGGATATGTGGAGGAGGTGGACAGTTCCAAGC
TCTTCGAGGCAGCAGTGGAGTCGATGCTGGCAACCTTAGACCCCTACACT
GAATACGAGGGGCAGCAGCTGGCGCAGGACATGCGGGAGgtaaggagtta
atttcttataagagaacgccctctcacgtacactgaccatggcataccgc
tcgctccctctctccctccctccctccttccatctcaccactcgtagGCC
GTTTCTGGACGCTACGGAGGAGTAGGTCTCGTCATTGCCGGCAGCAAGCC
CTTGGTCGAGAAGGGTAGTATCGTGAAGAAGGGAGGGAAGGAGGGAGGGG
ACGCTGGGAAGAAGGAGAAGAACACCCGCCCTGCGTTGGAGGACATTAAG
ATGAAGGAGACGGAGGGGGGCAAGCTGCCCATCACCAAGGGAGGGGGCGA
ACCCTCCTCCTCCTCCTCCCTCGCCGCCGCCCTCCCCCCGAAAACCGACA
CCCCCCTCCCTCCCTCCCCTCTCTCTCCCCCTCCGTCCCCTCTCTCCCCC
CCTCCTCTCCCTCCCCCTCCTCCCCCTCTTCCCCCTCCTCCCCCTCCTCC
TCGGGTTCCTTCCGGGAAGGAATCACCGTGGTGA
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protein sequence of NO25G01620.1

>NO25G01620.1-protein ID=NO25G01620.1-protein|Name=NO25G01620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=346bp
MIRRNDAAPPMLRLFLMIISTSWYCCTAFLILPSPSSLSSLPSASLLVER
RLSTASTSVCVWSGRKTRTRHAASNDDGEDSPKRGFLPNLFGGSKGSKRD
SKSGLPSKRLSSSSRASTPTPPTKKSFVWPSPSSSSSSPSPQRPPRPPLP
FLPLTSLPPSLLQPITLFENILLEIDRGYVEEVDSSKLFEAAVESMLATL
DPYTEYEGQQLAQDMREAVSGRYGGVGLVIAGSKPLVEKGSIVKKGGKEG
GDAGKKEKNTRPALEDIKMKETEGGKLPITKGGGEPSSSSSLAAALPPKT
DTPLPPSPLSPPPSPLSPPPLPPPPPPLPPPPPPPRVPSGKESPW*
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Synonyms
Publications