NO25G01610, NO25G01610 (gene) Nannochloropsis oceanica

Overview
NameNO25G01610
Unique NameNO25G01610
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1470
Alignment locationchr25:454436..455905 -

Link to JBrowse

Properties
Property NameValue
DescriptionMitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:454436..455905 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO25G01610 vs. NCBI_GenBank
Match: EWM21671.1 (Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24 [Nannochloropsis gaditana])

HSP 1 Score: 185.3 bits (469), Expect = 1.200e-43
Identity = 88/128 (68.75%), Postives = 103/128 (80.47%), Query Frame = 0 
Query:    1 MGGDDGFFSRTLEGALTGGSIGTVAGTMSSFWQSAGVKMNREQVARQVLPTIYANAGFLAGAGATFKAGEALMETWTGKEGEAINSAFGGALSGAFVGFRSGHPAIIAASAGACALVCTAIHLNGDKF 129
            MG DDGFFSRTLEGA+T             FW SAG++ NREQVARQVLPTIY N G+LAG GA+++AGEALMETWTGKEG  +N+AFGGA+SGAF+GFRSGHP ++ A+AGACAL C AIHLNG+KF
Sbjct:    1 MGSDDGFFSRTLEGAMTXXXXXXXXXXXXGFWNSAGIRFNREQVARQVLPTIYKNLGYLAGVGASYRAGEALMETWTGKEGAVVNTAFGGAVSGAFIGFRSGHPTVMVATAGACALGCVAIHLNGNKF 128
[Close]
BLAST of NO25G01610 vs. NCBI_GenBank
Match: EWM21672.1 (Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24 [Nannochloropsis gaditana])

HSP 1 Score: 180.6 bits (457), Expect = 3.000e-42
Identity = 83/113 (73.45%), Postives = 99/113 (87.61%), Query Frame = 0 
Query:   16 LTGGSIGTVAGTMSSFWQSAGVKMNREQVARQVLPTIYANAGFLAGAGATFKAGEALMETWTGKEGEAINSAFGGALSGAFVGFRSGHPAIIAASAGACALVCTAIHLNGDKF 129
            +TG S+G VAGTMS FW SAG++ NREQVARQVLPTIY N G+LAG GA+++AGEALMETWTGKEG  +N+AFGGA+SGAF+GFRSGHP ++ A+AGACAL C AIHLNG+KF
Sbjct:    1 MTGASVGAVAGTMSGFWNSAGIRFNREQVARQVLPTIYKNLGYLAGVGASYRAGEALMETWTGKEGAVVNTAFGGAVSGAFIGFRSGHPTVMVATAGACALGCVAIHLNGNKF 113
The following BLAST results are available for this feature:
BLAST of NO25G01610 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM21671.11.200e-4368.75Mitochondrial inner membrane translocase subunit T... [more]
EWM21672.13.000e-4273.45Mitochondrial inner membrane translocase subunit T... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL045nonsL045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL044nonsL044Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR045ncniR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR072ngnoR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004264NSK004264Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G01610.1NO25G01610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603905gene_8763Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100863g2gene8759Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G01610.1NO25G01610.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G01610 ID=NO25G01610|Name=NO25G01610|organism=Nannochloropsis oceanica|type=gene|length=1470bp
GCACAACTGTGCAGAATCGGGATGGAGGGTGATGTGAGTGTGGTGGGTGA
CAAGGGGGCGCTTTTCATTTTCTAGGAGGCGGGCACGCGCCTGAGGCCCC
GCGTCACTTTATGTATGGAACAATCAGCGCTGCGAGTGAAATGTTCGACC
ACAAGGGGCCAATCCTGGTGCAACGAACCAGAGTGTACTCTCCGCCCCTT
CCTTCTTGAGGTGGTGATGCTGGTAGTGTTGCTTGTGCAGGGCTACGTTA
CAAGAGAGGCTTTGAACTCTGCTCCTGATTGACGCAGGCAGCCCGAGATG
ACGCTTCGATTCGTTCCAGCGAGAGGCGGCTGATGATGACAAAGGGAGCC
TTAGATAGATGCAATGTGTACAAGTGGTGGGGGGCAGGTGGACCTCTATG
TAAGTCTGCGTGCCTGTGTGATAGCTAGTTGTATGTAACGTTAGGCTAGA
AGCCTTAGGAAAGGGGGACAGACAGGTCATCGACTGGTCTCTTTCTCATT
CCGCCCTTCACACCACACAGGACTCAAAGCATGGGTGGGGACGATGGCTT
CTTTAGCCGCACGCTGGAAGGCGCGCTCACGGGCGGCAGCATCGGAACAG
TCGCCGGTACGATGAGCAGTTTTTGGCAGTCCGCTGGGGTCAAGATGAAC
CGAGAGCAAGTGGCTCGACAGGTCCTCCCTACGATTTACGCCAATGCCGG
TTTCCTTGCTGGAGCCGGTGCCACGTTCAAGGCAGGGGAAGCACTGATGG
AGACGTGGACGGGCAAGGAGGGAGAGGCAATTAATAGCGCGTTTGGCGGT
GCGgtgagtcttatgtgtgggggtttgataggatcaaggtttccactcat
gattactttgaatggaggatatttccactccccaccataaacgattagaa
ccctgacttgcagctcgcctttctctccaagtattccagaacctttctgt
aatattcaccagttgcttgtatttttctttctccctctctccttcccata
tttcctccaccagTTGAGCGGGGCGTTCGTCGGCTTCCGTTCAGGTCACC
CGGCCATCATTGCAGCGTCAGCGGGGGCCTGTGCCTTGGTATGCACAGCT
ATCCACTTAAATGGGGACAAGTTCACATAAATTTATAGAAGGAGGGGGGG
AGGTATATGAGAGATGGAAAAGAGAAATGATGTAAATGTAGGACAGGGTG
AGGAGGAGGAAGAGGACGAGGAATGGGAACGGGTGAAGGAGGGAGGAAAA
CGCAATGTGGGACAATAAAAGGCTGGCATTTTGACACATTCAAGGCATTA
GATACGTCTTCATTATTCAATCCTCTCTCTTCCCCTCGTTCCTTTTTGAG
AAAAGTGCGTATATGTGGGGAGGAATGAGGGAGGAAGTGAAATGAAAGAG
CGAAATAGCGAGCGGTTGCTCCCCGTGGAGGGATGATGCTGGAAAGAAGA
AACAGACTACGATAAGAGGA
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protein sequence of NO25G01610.1

>NO25G01610.1-protein ID=NO25G01610.1-protein|Name=NO25G01610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=130bp
MGGDDGFFSRTLEGALTGGSIGTVAGTMSSFWQSAGVKMNREQVARQVLP
TIYANAGFLAGAGATFKAGEALMETWTGKEGEAINSAFGGALSGAFVGFR
SGHPAIIAASAGACALVCTAIHLNGDKFT*
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Synonyms
Publications