NO25G01520, NO25G01520 (gene) Nannochloropsis oceanica

Overview
NameNO25G01520
Unique NameNO25G01520
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1161
Alignment locationchr25:437075..438235 +

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Properties
Property NameValue
DescriptionSmall rna degrading nuclease 5-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:437075..438235 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR013520Exonuclease_RNaseT/DNA_pol3
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Homology
BLAST of NO25G01520 vs. NCBI_GenBank
Match: EWM21677.1 (small rna degrading nuclease 5-like protein [Nannochloropsis gaditana])

HSP 1 Score: 246.1 bits (627), Expect = 1.700e-61
Identity = 118/163 (72.39%), Postives = 139/163 (85.28%), Query Frame = 0
Query:  200 MCVTAAGLELTRLTLVNEMGAVVLDEYVKPLLPILDYRTPYSGITPATLANISTTLASLQPRLLALLSEKPTYLVGHALDGDLRALKLYHPYLMDTASLYPHPKGSPYKKSLKDLARTHLGGREIQQGHGSLGHDSYQDAVTALELAFLKLLQGHTFAVPGPW 363
            MC+T AGLELTRLTLV+EMG V+LDE V+P  PI+DY T YSGITPA+LA+++TTL SLQP LLALL+E PTYLVGH L+GDLRAL+++HPYL+DTA LYPHPKG+PYK+SLKDLA+  L GRE+Q GHGS GHDSYQDAVTALELA LK+ Q   FA+P  W
Sbjct:    1 MCLTEAGLELTRLTLVDEMGRVILDELVRPSTPIIDYLTAYSGITPASLASVTTTLPSLQPTLLALLAEAPTYLVGHGLEGDLRALRIHHPYLIDTAVLYPHPKGAPYKRSLKDLAKDLLDGREVQAGHGSSGHDSYQDAVTALELALLKMTQAPGFAIPEAW 163          
BLAST of NO25G01520 vs. NCBI_GenBank
Match: ESZ94348.1 (hypothetical protein SBOR_5257 [Sclerotinia borealis F-4128])

HSP 1 Score: 171.4 bits (433), Expect = 5.500e-39
Identity = 88/162 (54.32%), Postives = 120/162 (74.07%), Query Frame = 0
Query:  193 LWGVDCEMCVTAAG-LELTRLTLVNEMGAVVLDEYVKPLLPILDYRTPYSGITPATLANISTTLASLQPRLLALLSEKPTYLVGHALDGDLRALKLYHPYLMDTASLYPHPKGSPYKKSLKDLARTHLGGREIQQGHGSLGHDSYQDAVTALELAFLKLLQG 354
            ++ +DCEMC+T  G   LTR+++V+  G+VVLDE VKP  PI+DY T YSG+T A LA ++TTL  +Q +L+ L   + T L+GH+LD DL+ALKL HPY++DTA +YPHP+G P K SLK LA+ +L G+EIQ+GHG+ GHDS +DA T L+L  LK  +G
Sbjct:  325 IFALDCEMCMTGKGEFSLTRISIVSWDGSVVLDELVKPEKPIIDYLTQYSGMTEAMLAPVTTTLQDIQKKLVELFHPR-TILIGHSLDSDLKALKLTHPYIIDTAVIYPHPRGPPLKSSLKWLAQKYL-GKEIQKGHGATGHDSTEDARTCLDLVKLKCEKG 484          
BLAST of NO25G01520 vs. NCBI_GenBank
Match: SLM37677.1 (Ribonuclease H-like domain [Umbilicaria pustulata])

HSP 1 Score: 170.6 bits (431), Expect = 9.300e-39
Identity = 88/159 (55.35%), Postives = 118/159 (74.21%), Query Frame = 0
Query:  196 VDCEMCVTAAG-LELTRLTLVNEMGAVVLDEYVKPLLPILDYRTPYSGITPATLANISTTLASLQPRLLALLSEKPTYLVGHALDGDLRALKLYHPYLMDTASLYPHPKGSPYKKSLKDLARTHLGGREIQQGHGSLGHDSYQDAVTALELAFLKLLQG 354
            +DCEMC T  G L+LTR+++V   G+VV+DE VKP  PI+DY TPYSGITP  L  ++TTLA +Q RLL LL+ + T L+GH+L+ DL ALK+ HP+++DT+ LY HP+G P K SLK LA+  L  REIQ+GHG+ GHDS +DA+T L+L  +K  +G
Sbjct:  376 MDCEMCKTQGGNLDLTRISIVGWDGSVVMDELVKPEKPIIDYLTPYSGITPTKLNPVTTTLADIQSRLLELLTPE-TILIGHSLNADLSALKITHPFIVDTSILYQHPRGPPLKSSLKWLAQKFL-NREIQKGHGTRGHDSIEDAITCLDLVKMKCEKG 532          
BLAST of NO25G01520 vs. NCBI_GenBank
Match: KXT10906.1 (hypothetical protein AC579_3483 [Pseudocercospora musae])

HSP 1 Score: 169.9 bits (429), Expect = 1.600e-38
Identity = 90/178 (50.56%), Postives = 121/178 (67.98%), Query Frame = 0
Query:  192 RLWGVDCEMCVTAAG------LELTRLTLVNEMGAVVLDEYVKPLLPILDYRTPYSGITPATLANISTTLASLQPRLLALLSEKPTYLVGHALDGDLRALKLYHPYLMDTASLYPHPKGSPYKKSLKDLARTHLGGREIQQGHGSLGHDSYQDAVTALELAFLKLLQGHTFAVPGPWG 364
            R+  +DCEMC+T+          LTR++LV+  G VVLDE VKP  PI DY T YSGITP  L N++TTL+ +Q +LL++L+ + T LVGH+L+ DL AL++ HPY++DTA LYPHP+G P K SLK L + +L  REIQ+GHGS GH+S +DA   L+L  LK  +G  +  P   G
Sbjct:  388 RVLAMDCEMCITSPKGITPQVFSLTRVSLVDWDGQVVLDELVKPAKPITDYLTAYSGITPTMLENVTTTLSDIQKKLLSILTPQ-TILVGHSLNSDLNALQITHPYIIDTALLYPHPRGPPLKSSLKWLCQKYL-SREIQKGHGSTGHNSVEDAKAVLDLVKLKTEKGKAWGTPDASG 563          
BLAST of NO25G01520 vs. NCBI_GenBank
Match: EMR89087.1 (putative rna exonuclease protein [Botrytis cinerea BcDW1])

HSP 1 Score: 169.1 bits (427), Expect = 2.700e-38
Identity = 88/162 (54.32%), Postives = 117/162 (72.22%), Query Frame = 0
Query:  193 LWGVDCEMCVTAAG-LELTRLTLVNEMGAVVLDEYVKPLLPILDYRTPYSGITPATLANISTTLASLQPRLLALLSEKPTYLVGHALDGDLRALKLYHPYLMDTASLYPHPKGSPYKKSLKDLARTHLGGREIQQGHGSLGHDSYQDAVTALELAFLKLLQG 354
            ++ +DCEMC+T      LTR+++V   G+VVLDE VKP  PI+DY T YSGIT   LA ++TTL  +Q RL+ L   + T L+GH+LD DL+ALKL HPY++DTA +YPHP+G P K SLK LA+ +L G+EIQ+GHG+ GHDS +DA T L+L  LK  +G
Sbjct:  332 IFAMDCEMCMTGKNEFSLTRISIVGWDGSVVLDELVKPEKPIIDYLTQYSGITEEMLAPVTTTLQDIQKRLVELFHPR-TILIGHSLDSDLKALKLTHPYIIDTAVIYPHPRGRPLKSSLKWLAQKYL-GKEIQKGHGATGHDSTEDARTCLDLVKLKCEKG 491          
BLAST of NO25G01520 vs. NCBI_GenBank
Match: XP_001553724.1 (hypothetical protein BCIN_15g01320 [Botrytis cinerea B05.10] >CCD47475.1 similar to RNA exonuclease [Botrytis cinerea T4] >ATZ57568.1 hypothetical protein BCIN_15g01320 [Botrytis cinerea B05.10])

HSP 1 Score: 169.1 bits (427), Expect = 2.700e-38
Identity = 88/162 (54.32%), Postives = 117/162 (72.22%), Query Frame = 0
Query:  193 LWGVDCEMCVTAAG-LELTRLTLVNEMGAVVLDEYVKPLLPILDYRTPYSGITPATLANISTTLASLQPRLLALLSEKPTYLVGHALDGDLRALKLYHPYLMDTASLYPHPKGSPYKKSLKDLARTHLGGREIQQGHGSLGHDSYQDAVTALELAFLKLLQG 354
            ++ +DCEMC+T      LTR+++V   G+VVLDE VKP  PI+DY T YSGIT   LA ++TTL  +Q RL+ L   + T L+GH+LD DL+ALKL HPY++DTA +YPHP+G P K SLK LA+ +L G+EIQ+GHG+ GHDS +DA T L+L  LK  +G
Sbjct:  332 IFAMDCEMCMTGKNEFSLTRISIVGWDGSVVLDELVKPEKPIIDYLTQYSGITEEMLAPVTTTLQDIQKRLVELFHPR-TILIGHSLDSDLKALKLTHPYIIDTAVIYPHPRGRPLKSSLKWLAQKYL-GKEIQKGHGATGHDSTEDARTCLDLVKLKCEKG 491          
BLAST of NO25G01520 vs. NCBI_GenBank
Match: XP_001591257.1 (hypothetical protein SS1G_07883 [Sclerotinia sclerotiorum 1980 UF-70] >EDN92021.1 hypothetical protein SS1G_07883 [Sclerotinia sclerotiorum 1980 UF-70] >APA13488.1 hypothetical protein sscle_11g082580 [Sclerotinia sclerotiorum 1980 UF-70])

HSP 1 Score: 168.3 bits (425), Expect = 4.600e-38
Identity = 87/162 (53.70%), Postives = 119/162 (73.46%), Query Frame = 0
Query:  193 LWGVDCEMCVTAAG-LELTRLTLVNEMGAVVLDEYVKPLLPILDYRTPYSGITPATLANISTTLASLQPRLLALLSEKPTYLVGHALDGDLRALKLYHPYLMDTASLYPHPKGSPYKKSLKDLARTHLGGREIQQGHGSLGHDSYQDAVTALELAFLKLLQG 354
            ++ +DCEMC+T      LTR+++V+  G+VVLDE VKP  PI+DY T YSGIT + LA ++TTL  +Q RL+ L   + + L+GH+LD DL+ALKL HPY++DTA +YPHP+G P K SLK LA+ +L G+EIQ+GHG+ GHDS +DA T L+L  LK  +G
Sbjct:  327 IFAMDCEMCMTDKNEFSLTRISIVSWDGSVVLDELVKPEKPIIDYLTQYSGITESMLAPVTTTLQDIQKRLVKLFHSR-SILIGHSLDSDLKALKLTHPYIIDTAVIYPHPRGPPLKSSLKWLAQKYL-GKEIQKGHGATGHDSTEDARTCLDLVKLKCEKG 486          
BLAST of NO25G01520 vs. NCBI_GenBank
Match: OTA36206.1 (hypothetical protein BTJ68_05443 [Hortaea werneckii EXF-2000])

HSP 1 Score: 166.4 bits (420), Expect = 1.800e-37
Identity = 88/177 (49.72%), Postives = 118/177 (66.67%), Query Frame = 0
Query:  196 VDCEMCVTA------AGLELTRLTLVNEMGAVVLDEYVKPLLPILDYRTPYSGITPATLANISTTLASLQPRLLALLSEKPTYLVGHALDGDLRALKLYHPYLMDTASLYPHPKGSPYKKSLKDLARTHLGGREIQQGHGSLGHDSYQDAVTALELAFLKLLQGHTFAVPGPWGREE 367
            +DCEMC+T+          LTR+++++  G  V+DE+V P  PI DY TPYSGITP  L  +ST+LA +Q +LL++L+ + T LVGH+L+ DL ALK+ HPY++DTA LYPHP+G P K SLK LA+ +L  REIQ+GHGS GHDS +DA   L+L   K  +G        WG  E
Sbjct:  351 MDCEMCITSPKGVSPQSFSLTRISIIDWDGKTVMDEFVMPENPITDYLTPYSGITPTILEGVSTSLADIQKKLLSILTPQ-TILVGHSLNSDLNALKITHPYIIDTALLYPHPRGPPLKSSLKWLAQKYL-SREIQKGHGSTGHDSVEDAKACLDLVKQKCEKGKA------WGTSE 519          
BLAST of NO25G01520 vs. NCBI_GenBank
Match: ANM86523.1 (putative exonuclease [Cladonia uncialis subsp. uncialis] >AUW31365.1 putative exonuclease [Cladonia uncialis subsp. uncialis])

HSP 1 Score: 166.4 bits (420), Expect = 1.800e-37
Identity = 90/172 (52.33%), Postives = 119/172 (69.19%), Query Frame = 0
Query:  196 VDCEMCVTAAG-LELTRLTLVNEMGAVVLDEYVKPLLPILDYRTPYSGITPATLANISTTLASLQPRLLALLSEKPTYLVGHALDGDLRALKLYHPYLMDTASLYPHPKGSPYKKSLKDLARTHLGGREIQQGHGSLGHDSYQDAVTALELAFLKLLQGHTFAVPGPWGREE 367
            +DCEMC+   G   LTR++LV   G V++DE VKP  PI+DY TPYSGITPA L ++ TTLA +Q RLL  ++ K   L+GH+L+ DL ALKL HP+++DT+ LYPHP+G P K SLK LA+ +L GREIQ+GHG++GHDS +DA   L+L  +K  +G        WG  E
Sbjct:  399 MDCEMCLVEGGEPALTRISLVEWDGNVLMDELVKPDRPIIDYLTPYSGITPAKLEHVDTTLAEIQSRLLKEITAK-HILIGHSLNSDLLALKLTHPFVIDTSILYPHPRGPPMKSSLKWLAQKYL-GREIQKGHGTMGHDSIEDARACLDLVKMKCERG------PQWGTSE 562          
BLAST of NO25G01520 vs. NCBI_GenBank
Match: OTA37953.1 (hypothetical protein BTJ68_02463 [Hortaea werneckii EXF-2000])

HSP 1 Score: 165.6 bits (418), Expect = 3.000e-37
Identity = 87/177 (49.15%), Postives = 119/177 (67.23%), Query Frame = 0
Query:  196 VDCEMCVTA------AGLELTRLTLVNEMGAVVLDEYVKPLLPILDYRTPYSGITPATLANISTTLASLQPRLLALLSEKPTYLVGHALDGDLRALKLYHPYLMDTASLYPHPKGSPYKKSLKDLARTHLGGREIQQGHGSLGHDSYQDAVTALELAFLKLLQGHTFAVPGPWGREE 367
            +DCEMC+T+          LTR+++++  G  V+D++V P  PI DY TPYSGITPA L  ++T+LA +Q +LL++L+ + T LVGH+L+ DL ALK+ HPY++DTA LYPHP+G P K SLK LA+ +L  REIQ+GHGS GHDS +DA   L+L   K  +G        WG  E
Sbjct:  351 MDCEMCITSPKGVSPQSFSLTRISIIDWDGKTVMDDFVTPENPITDYLTPYSGITPAMLEGVTTSLADIQQKLLSILTPQ-TILVGHSLNSDLNALKITHPYIIDTALLYPHPRGPPLKSSLKWLAQKYL-SREIQKGHGSTGHDSVEDAKACLDLVKQKCEKGKA------WGTSE 519          
The following BLAST results are available for this feature:
BLAST of NO25G01520 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21677.11.700e-6172.39small rna degrading nuclease 5-like protein [Nanno... [more]
ESZ94348.15.500e-3954.32hypothetical protein SBOR_5257 [Sclerotinia boreal... [more]
SLM37677.19.300e-3955.35Ribonuclease H-like domain [Umbilicaria pustulata][more]
KXT10906.11.600e-3850.56hypothetical protein AC579_3483 [Pseudocercospora ... [more]
EMR89087.12.700e-3854.32putative rna exonuclease protein [Botrytis cinerea... [more]
XP_001553724.12.700e-3854.32hypothetical protein BCIN_15g01320 [Botrytis ciner... [more]
XP_001591257.14.600e-3853.70hypothetical protein SS1G_07883 [Sclerotinia scler... [more]
OTA36206.11.800e-3749.72hypothetical protein BTJ68_05443 [Hortaea wernecki... [more]
ANM86523.11.800e-3752.33putative exonuclease [Cladonia uncialis subsp. unc... [more]
OTA37953.13.000e-3749.15hypothetical protein BTJ68_02463 [Hortaea wernecki... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL045nonsL045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL044nonsL044Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR045ncniR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR072ngnoR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004252NSK004252Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G01520.1NO25G01520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633130gene_8754Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_102384g1gene8752Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G01520.1NO25G01520.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G01520 ID=NO25G01520|Name=NO25G01520|organism=Nannochloropsis oceanica|type=gene|length=1161bp
ATGAGTGAAAGAGAAGCAGCATCTTATTCTCTCACTGAACAAGAGCAGTT
ACGGCAACGGTTTCCGTTACTTGGGACGGGGAGGGAGGGAGGGGGAGAAG
AGGATGGATGGGTGAGTAGTCGGAGGTGGGGTGGGGAGGGGTGGTGGGAA
TGCGAGGAGGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGGAGAGAGAGG
GGTGGAGAGAAAGAGGAGGAAGTGGGAAGAGGGATGGGGGGAAGGAGGGT
TTGATACGGGAGATTGGTTCGGCGAGGGGGGAGAAAGGGAGGAGGAAGGG
CAGGAAAAAGAGGAGGATGAGGCGAGGAGTAGCAGCAGCAGTAGCAGCAG
TGATGATGGCGAGAGCAGGAGTAACGGCGTCATGGATACCGGTAGTAGTG
GAGACGAGGGAGAGGTCGAGGGGGAGGAGGAGGATGAGGAAGGGAAGAAA
CGAAAGGCTTCCGCCCGCAAAAGGGGATCCGCTGGAGCAGCTGCCACTTC
CCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCTCCCTCCCT
CCAATCCCTCCCCCTGGCAAATCCGTCTTTGGGGCGTGGATTGTGAGATG
TGCGTCACGGCCGCAGGGCTTGAATTAACACGCCTTACGCTCGTGAACGA
AATGGGCGCTGTAGTCTTGGATGAGTATGTGAAGCCCCTGTTGCCCATCC
TTGACTATCGAACACCCTACAGCGGGATTACCCCGGCGACCCTCGCCAAT
ATCTCCACCACTCTTGCCTCTCTCCAACCCCGCCTCCTCGCCCTCCTCTC
CGAGAAACCCACCTACCTCGTCGGCCATGCCCTTGACGGTGACCTACGTG
CTCTTAAACTCTACCACCCGTACCTCATGGATACTGCCTCCCTCTATCCC
CACCCGAAAGGCTCGCCCTACAAGAAGTCACTCAAAGACCTTGCGCGCAC
ACATTTGGGAGGGCGGGAGATCCAACAAGGGCATGGCAGCCTGGGACATG
ATTCGTACCAAGACGCGGTAACGGCTCTAGAACTGGCGTTTCTCAAGCTC
CTGCAGGGACACACGTTTGCGGTCCCTGGCCCATGGGGGAGGGAAGAGGG
TGGGGAGGGGGAGGAGGAGGGGGGGAAGGGAAGGAGGAACCGGTGTTTGG
ACGGGTGGTGA
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protein sequence of NO25G01520.1

>NO25G01520.1-protein ID=NO25G01520.1-protein|Name=NO25G01520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=387bp
MSEREAASYSLTEQEQLRQRFPLLGTGREGGGEEDGWVSSRRWGGEGWWE
CEEEEEEEEEEEEGERGVERKRRKWEEGWGEGGFDTGDWFGEGGEREEEG
QEKEEDEARSSSSSSSSDDGESRSNGVMDTGSSGDEGEVEGEEEDEEGKK
RKASARKRGSAGAAATSPLPPPPPPPPPPPLPPSNPSPWQIRLWGVDCEM
CVTAAGLELTRLTLVNEMGAVVLDEYVKPLLPILDYRTPYSGITPATLAN
ISTTLASLQPRLLALLSEKPTYLVGHALDGDLRALKLYHPYLMDTASLYP
HPKGSPYKKSLKDLARTHLGGREIQQGHGSLGHDSYQDAVTALELAFLKL
LQGHTFAVPGPWGREEGGEGEEEGGKGRRNRCLDGW*
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Synonyms
Publications