NO25G01510, NO25G01510 (gene) Nannochloropsis oceanica

Overview
NameNO25G01510
Unique NameNO25G01510
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1857
Alignment locationchr25:434976..436832 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:434976..436832 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO25G01510 vs. NCBI_GenBank
Match: EWM21679.1 (hypothetical protein Naga_100412g4, partial [Nannochloropsis gaditana])

HSP 1 Score: 134.8 bits (338), Expect = 9.100e-28
Identity = 95/178 (53.37%), Postives = 105/178 (58.99%), Query Frame = 0 
Query:  275 LNVYLSPREGKEGWREGGVEGVRLGFNYWVHERTKILGADARDVMLSVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLYRHALPHRAPHVILATVTGLPPPEAVRDLHPSLLPFLTSLTAAPARYTPSFDPIPRPDHLLSAAACMLWCPSS 453
            LNVYLSP+EG EG  EGGVEGV LGFNYWVHERTK+LGAD    +L VL             XXXXXXXXXXXXXXXX                                   A  V++  VTGL P +AVRDLHPSL PFLTSL++ P RYT + D  PRPDHLLSAAA +LW P S
Sbjct:  237 LNVYLSPQEGTEGAGEGGVEGVELGFNYWVHERTKVLGADVARTILCVLPPRLRHPTDAAAPXXXXXXXXXXXXXXXXGTLAD------------------------------ARRVVVVNVTGLSPSDAVRDLHPSLAPFLTSLSSVPIRYTATHDANPRPDHLLSAAASLLWLPPS 384
The following BLAST results are available for this feature:
BLAST of NO25G01510 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21679.19.100e-2853.37hypothetical protein Naga_100412g4, partial [Nanno... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL045nonsL045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL044nonsL044Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR045ncniR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR072ngnoR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G01510.1NO25G01510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100412g4gene8751Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G01510.1NO25G01510.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G01510 ID=NO25G01510|Name=NO25G01510|organism=Nannochloropsis oceanica|type=gene|length=1857bp
ATGTCTCCAGTGGGCAAGAAGAAGCGCGGTGGTAGTGCTGCTCGAAGAGG
AGGTCGAGGCAGCAGCAATGGCGGACCTCCCCATCCCTCTTCATCCACCA
CGCTCATAAGTCCTCCCATGACACAAGTACAAGAAACGGGCACAGTAGCT
TCAGCAGATGGGAAAGGTGGAGGAGGGCTACTGCCCGACCCGCCTGCCTC
TCTTCTCCACCACCACCACCTGCAGCACCATCACCCTCAGCACGCCAACC
GCCACCAGCATGTCCTCCCGCCGCAACACTTCACTGGAGCAAGAGGAGGG
AGAGGTTTGCGAGGCCGCGGTGAAAGAGGAGGGGAAGGAGGAGAACGAGG
CAGAGGCAGAGTAGGGCACACGTTCTATCATCAACAGCAGTATGATGGGT
CTCCTCCTCACTCTCCTCCTCTTCCAGCTTCGTCCTCCCCCTCCCTTCCT
GTTGCTACTGCTGTTGCTACTGCTGCTACCATAACTGGGGTCAAACGATC
CCGATACAGCATGACAAATGCTTCCTCCCATTCCTACTCTCATTCTGCTA
GAGGTGCTGCTGGTGCTGCTGCTCCTACCCGTCCATACGCCACGCTACGA
CGACATTCATTGCCAACTTCCACTTTGCGGAGAGGGCGCAATAACAGCAT
TATAAACAACAATAGCAGCACCACCAGCACCAGCACCAGCAACCATACCT
TGAGAAGAAGCAGCCTGTATGTGGGCGGTACCACCCAAAAGCCGACATCT
TCTGCAGCAACAGCAGCAGCAACTGCATCAACGGGAGCGGCAGCAAAAGG
CGGCGGCGCTCAAGCCACCTCCCTAAATGTCTACCTCTCCCCACGGGAAG
GGAAAGAGGGATGGAGGGAGGGAGGTGTGGAAGGAGTCCGCCTGGGGTTT
AACTATTGGGTGCACGAACGAACTAAGATTTTAGGGGCAGATGCGAGGGA
CGTCATGCTCAGCGTGCTTTTGCACAAGTTGCAGCAACAACAACAACAAC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAAGGGGAGCAGGAGAAG
GAGGATCAAGAGGAGGAGGAGGAGGAGGAGGAGTGGGATAATCAGGCCTC
TTTCTCCTCCTCCTCTCCCTCCCTCCCTCCCTTCCTGTACCGCCACGCCT
TGCCCCACAGAGCGCCACACGTCATCCTTGCTACCGTTACCGGCCTCCCT
CCCCCTGAGGCCGTCCGTGACCTACACCCCTCCCTCCTTCCCTTTCTCAC
CTCCCTCACAGCTGCTCCTGCCCGTTACACGCCCTCCTTCGACCCTATTC
CTCGTCCCGACCATCTTCTTTCCGCAGCGGCCTGCATGCTCTGGTGCCCC
TCCTCCCCCCCTTCTTCCCTCCCGCCTGACTTCCCACTGCCCAAGCTCCT
GAATAGCCATGTGGTGGTCCTGGTGGAGAAGGGAAAGGGAGGAAGGGAGG
GAGGGAAGGAAGGAGGACGGTGGGTATTGAAGCCGGGGGGGGATTGGGAG
GCGTTATTGAGTGAGGAGAGTGAGGTGGAGGAAGGGGAGGAGGTCGAGGA
GGGAGGGAGGGAGGGCGAGGTGGAGGGAGGGGGCATTTTGCTGTGGGAGT
TGAGGAGGGAAGGAGGGAGCAAGGAAGGGCCTCAAGTGGAGGGCGGTATA
TGGTGTTTGAGAAGAAAGGGAGGAGGAGGAGGGAGAGGAGGAGGGAAGGG
AATGAAGAGGGAGTTGACCTTGACGTGGGGTGGGGGGAGGGCGGGGTCGA
ATGGAGGAGGGCTGGTCATGGAAGCCACCTACGCGCTGCCGGCGGAAGAA
GGACGAGGAGGAGAAAGAGGAGGAGGAGGAGGAGGGGGGGGGGGAAAGGG
GCACTGA
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protein sequence of NO25G01510.1

>NO25G01510.1-protein ID=NO25G01510.1-protein|Name=NO25G01510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=619bp
MSPVGKKKRGGSAARRGGRGSSNGGPPHPSSSTTLISPPMTQVQETGTVA
SADGKGGGGLLPDPPASLLHHHHLQHHHPQHANRHQHVLPPQHFTGARGG
RGLRGRGERGGEGGERGRGRVGHTFYHQQQYDGSPPHSPPLPASSSPSLP
VATAVATAATITGVKRSRYSMTNASSHSYSHSARGAAGAAAPTRPYATLR
RHSLPTSTLRRGRNNSIINNNSSTTSTSTSNHTLRRSSLYVGGTTQKPTS
SAATAAATASTGAAAKGGGAQATSLNVYLSPREGKEGWREGGVEGVRLGF
NYWVHERTKILGADARDVMLSVLLHKLQQQQQQQQQQQQQQQQQKGEQEK
EDQEEEEEEEEWDNQASFSSSSPSLPPFLYRHALPHRAPHVILATVTGLP
PPEAVRDLHPSLLPFLTSLTAAPARYTPSFDPIPRPDHLLSAAACMLWCP
SSPPSSLPPDFPLPKLLNSHVVVLVEKGKGGREGGKEGGRWVLKPGGDWE
ALLSEESEVEEGEEVEEGGREGEVEGGGILLWELRREGGSKEGPQVEGGI
WCLRRKGGGGGRGGGKGMKRELTLTWGGGRAGSNGGGLVMEATYALPAEE
GRGGERGGGGGGGGGKGH*
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Synonyms
Publications