NO25G01450, NO25G01450 (gene) Nannochloropsis oceanica

Overview
NameNO25G01450
Unique NameNO25G01450
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2946
Alignment locationchr25:410716..413661 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:410716..413661 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO25G01450 vs. NCBI_GenBank
Match: EWM21660.1 (hypothetical protein Naga_100804g2 [Nannochloropsis gaditana])

HSP 1 Score: 334.0 bits (855), Expect = 1.600e-87
Identity = 170/250 (68.00%), Postives = 208/250 (83.20%), Query Frame = 0
Query:  244 SALTSILKTHGELGEGLPDSLLTSHCTGLVKVLRETASLQRFILGESQMHGDSQAYMDVCAHHDAKRTQKQMASLRLLRDDFNEKHAALLKEFRGLREQVTTMRCRVQNAAWPAEKKTLILAALQRYDTLYEQGGELKTLDLTESAIGAVQKLRRQLPRLPEDADVLKDILGRIKRVSRTLMALGLTTEAHMTAAWESVLELLTYRPMSFVVEETEKAWRELRDVKLQEAQRRQEQKSRLRALVDRLGSP 494
            +AL + L+ H  +G  LPD+LLT+HC GLVK+LRETA+L RFILGES + GDSQAYMDVC HH  +   +Q+ SLR+LR+DF +KHAAL KE RGLREQ +++R RV  AAWP EKKT+ILAALQRY  + + GGEL+TLDLTESAIGAVQKLRRQLPRLPE+AD L+++ G+IKRV+RTL+ALGLTTE   ++AWESV++LLTYRPM FV+EE  +AWREL+DVKLQEAQRR EQK RL AL++R GSP
Sbjct:  254 TALMATLRAH-TIGNDLPDALLTTHCQGLVKMLRETAALNRFILGESALLGDSQAYMDVCTHHVQRYATRQLGSLRILREDFQDKHAALQKELRGLREQASSLRARVFQAAWPEEKKTVILAALQRYLHVDQPGGELQTLDLTESAIGAVQKLRRQLPRLPEEADALREVFGKIKRVTRTLVALGLTTEEQTSSAWESVMQLLTYRPMGFVLEEAGRAWRELKDVKLQEAQRRLEQKGRLTALLERAGSP 502          
The following BLAST results are available for this feature:
BLAST of NO25G01450 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21660.11.600e-8768.00hypothetical protein Naga_100804g2 [Nannochloropsi... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL045nonsL045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR045ncniR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004274NSK004274Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G01450.1NO25G01450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|218174gene_8746Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100804g2gene8769Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G01450.1NO25G01450.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G01450 ID=NO25G01450|Name=NO25G01450|organism=Nannochloropsis oceanica|type=gene|length=2946bp
ATGCTGGCCTGGAAGGAAAAGGACGACCCGCAGGAACTGCAGCAACTCAA
GCGAAAAGATAAGGAGGAGGAGGACAGCAGCAGCACCGTGCAAGCTGCGG
TCGTCAGACTGCGAGACTTACATTTAGAGGGTGCGGATGATTCGGAAGTC
GAGGGAGAACAGGAGGAGACTGACTGCAAGCATGACAAGGTGGAAGTCAC
TCACTCCACCGCTGCCGTGCACACACGAGGACGGCCTGGCCAGAAGAGTG
AGGGAGTAGGCCCCTCACCAGATGCAGAAAAAACGCCGTTGGTTCGTGCA
GCTGCGGCAGCAGAAACATCGACGCCGAGCGAATCGACCATCCCAGCCGG
CAGCAGCCCCGCTGTCTTTTTTACTCCTGTCGCGACCCTCACAGAAGAGA
GCACCAAGCCAGGATCTGCCAGCAGCAACAGTGGCAACAGCAATAGCAGC
AGCCTCGTTGTCAACATTGTGCCACTGTCGACGCCGTTACCGCAAGCGCA
GCAGCACGAGTACTCTAGTACTGCCGCCACCATGAGCACGAGTAGCAACA
GCTTGGCGACAACTCCCCAGCAGCATTACCAGCGGCATCAGCGGCATCAG
CAGCACCAGCAGGATCTATCACACAATGGCACTACTACCACAGCTCCCAC
CAAGACTACGACAGCCATCAACACCTCCCCTCCTAAGCATCCCCCCCTCC
AGGAACAGCAGCAGCAGCAAAGCCTCGTCTCAGCCCTCACCAGCATCCTC
AAAACCCACGGCGAGCTCGGGGAAGGCTTGCCCGACTCCCTCCTCACCTC
CCATTGCACCGGCCTGGTGAAGGTCTTACGTGAGACTGCTTCCCTGCAGC
GTTTCATCTTGGGGGAGAGTCAAATGCATGGGGACAGCCAAGCCTACATG
GACGTCTGCGCTCACCATGATGCCAAACGCACCCAAAAACAAATGGCTTC
TCTTCGCTTGCTCCGAGACGACTTCAACGAAAAACACGCGGCTCTACTCA
AGGAATTCCGGGGTCTCCGCGAGCAGGTCACCACCATGCGGTGCCGCGTT
CAAAACGCGGCCTGGCCCGCCGAGAAGAAGACGCTTATCCTTGCGGCACT
CCAACGCTATGACACCTTGTATGAGCAAGGGGGGGAGCTCAAAACACTCG
ACCTGACCGAATCGGCTATTGGCGCCGTTCAGAAGCTCCGCCGACAGCTT
CCACGCCTGCCGGAGGATGCGGACGTGCTTAAGGACATCTTGGGGAGGAT
TAAGAGGGTGAGTCGGACGTTGATGGCCCTTGGACTGACCACCGAAGCCC
ACATGACGGCGGCTTGGGAGAGCGTGTTGGAGCTGTTGACGTATCGGCCC
ATGTCTTTTGTGGTGGAGGAGACGGAGAAGGCGTGGAGGGAGTTGAGGGA
TGTGAAGCTTCAGGAGGCGCAGAGGCGGCAGGAGCAGAAGAGTAGGTTGA
GGGCACTGGTGGACCGGCTGGGAAGCCCGGGTTCCTCGGAGGAAAAGGAG
GAGCAGGATGAGGAGAGAGAGGAGGAGGGGGAGGAGGAGGAGGGAATTGA
CGAGGAGGAGGGTGTGAAGATGGCACTAAAGATGCCGAAGAAGAGAAGGG
AGGAGGGGCGGGGAATTTTGAGTGGTATGGTGGGTGCGGTTCGTGAGTGG
GGGGAGGGGGAGGAAGCGAGGGAGGAGAAGAAAGGCGTTGGGGGAATGAC
GAAACGGGATAAAGACGAGGAGCAGGAGGAGGGAGGGAAGGAAGAGGATA
GTGAGGAAGAGGGAGGGGAGGATCGACGGCAGAGTGGGGATAGCACGCTT
TCTTTCACTTGCTGCCTGGACGAGGACGACGAAGAGAAAGGAGAGGGGTC
AGAGTGCCACCTCTTCCGGGAGCAAGGTGATGCTCTCTATGCTGGTCGCC
TCAGCAATGGTTCCAATAGCAAAAAGGGTAGCAGCAGCAGTAGCAGGAGG
AGCAGTAGCAGTAGTATGGGCAGTATCTACAGCCGCCGAAGCAGCAGCAG
TAGCATTGTGAGCATTGAGAAGGAGAAGGAAGTAGAGGGAGGGCTGGAGG
GAGAGAATGGTAATCGTCGCCCATTCCCCATCACCTCTCCCGTTGCCCCT
CTTCACCAGCAGCTCCAGTCGCGCGCTCGCTCTTCTTCGACTTCTTCTTC
CTCGTCACCTGTGCCCTTGACGGAAGTGTCAGCCCGGTCTACCTCCAGCA
GGAGCCGTGATGCCTCCACTTCCAGCGCGGGCAGCAGCACTAGCTACAGC
ACTAGCTGCAGCACTGCCAAGACGAGGGGCTCGACGAGGAATGAAGGTGA
GGAGGGGGAGGATGAGAACCGACGCCGCCGTTTATATGGAGCCAAGACCC
AGCTCCACCCATCCACCTCTTCCTCCGCCACCGCCAAGACCAAAGCTATA
AGCAAAAGCACCAAGGGCAAGGGAAGTAGCAGCACCACCAGCACCAGCCG
ACGAGGCGTGCCTACTGCTTCCTCCTCCTTTTCCTCCTCTTCCTTGTTCT
CCTCTTCCACCCTCCCGACGGAGCGGGCTAGCATGTACGTGTCTCGCACG
TCCGCCGCCGCCACCTCCTGCACTTGGGGCTCATCTGTTGGTGCTGGGGG
AGAAGGAAAGGGAGGAGGGGGAGGGCTTGGCTCAGTTGGTGGGACAGTAG
CCATGTCAGGTATGTCCAAAAGGACGACGCGGACGGACTCAGCGGCAGCG
CCAGGAGGTGGGAATGAAAGCGGTGGGAAGAACAAAGCAAAGACTGACAC
GCAACGAGGAGCAAAAGGGCGGGTTGAGGCTGCTCAGGCCTTGACCACCA
GCAGCAGCAGCAGCAGCAGCAATAATAAAGCTTCCCCGCCCGGGGTAGGC
AATGAGGTGAGGGTGCAGGGCCAGGGGGAAGGAGCGGGGGCAAAAAGATC
GCAGTCTTTCTACCACCCTCGGACATATCCCGATAGTAAATGGTGA
back to top

protein sequence of NO25G01450.1

>NO25G01450.1-protein ID=NO25G01450.1-protein|Name=NO25G01450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=982bp
MLAWKEKDDPQELQQLKRKDKEEEDSSSTVQAAVVRLRDLHLEGADDSEV
EGEQEETDCKHDKVEVTHSTAAVHTRGRPGQKSEGVGPSPDAEKTPLVRA
AAAAETSTPSESTIPAGSSPAVFFTPVATLTEESTKPGSASSNSGNSNSS
SLVVNIVPLSTPLPQAQQHEYSSTAATMSTSSNSLATTPQQHYQRHQRHQ
QHQQDLSHNGTTTTAPTKTTTAINTSPPKHPPLQEQQQQQSLVSALTSIL
KTHGELGEGLPDSLLTSHCTGLVKVLRETASLQRFILGESQMHGDSQAYM
DVCAHHDAKRTQKQMASLRLLRDDFNEKHAALLKEFRGLREQVTTMRCRV
QNAAWPAEKKTLILAALQRYDTLYEQGGELKTLDLTESAIGAVQKLRRQL
PRLPEDADVLKDILGRIKRVSRTLMALGLTTEAHMTAAWESVLELLTYRP
MSFVVEETEKAWRELRDVKLQEAQRRQEQKSRLRALVDRLGSPGSSEEKE
EQDEEREEEGEEEEGIDEEEGVKMALKMPKKRREEGRGILSGMVGAVREW
GEGEEAREEKKGVGGMTKRDKDEEQEEGGKEEDSEEEGGEDRRQSGDSTL
SFTCCLDEDDEEKGEGSECHLFREQGDALYAGRLSNGSNSKKGSSSSSRR
SSSSSMGSIYSRRSSSSSIVSIEKEKEVEGGLEGENGNRRPFPITSPVAP
LHQQLQSRARSSSTSSSSSPVPLTEVSARSTSSRSRDASTSSAGSSTSYS
TSCSTAKTRGSTRNEGEEGEDENRRRRLYGAKTQLHPSTSSSATAKTKAI
SKSTKGKGSSSTTSTSRRGVPTASSSFSSSSLFSSSTLPTERASMYVSRT
SAAATSCTWGSSVGAGGEGKGGGGGLGSVGGTVAMSGMSKRTTRTDSAAA
PGGGNESGGKNKAKTDTQRGAKGRVEAAQALTTSSSSSSSNNKASPPGVG
NEVRVQGQGEGAGAKRSQSFYHPRTYPDSKW*
back to top
Synonyms
Publications