NO25G01430, NO25G01430 (gene) Nannochloropsis oceanica

Overview
NameNO25G01430
Unique NameNO25G01430
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3093
Alignment locationchr25:403746..406838 +

Link to JBrowse

Properties
Property NameValue
DescriptionF-box domain, cyclin-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:403746..406838 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0003723RNA binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR036047F-box-like_dom_sf
IPR001810F-box_dom
IPR006553Leu-rich_rpt_Cys-con_subtyp
Homology
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BLAST of NO25G01430 vs. NCBI_GenBank
Match: EWM20975.1 (F-box domain, cyclin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 482.6 bits (1241), Expect = 2.700e-132
Identity = 279/528 (52.84%), Postives = 339/528 (64.20%), Query Frame = 0 
Query:   28 SRPSSVTSLPVEVLTLVFHHLPVCDLQMMGETCHNLQRAVRYDATLWAHVELPLQDGRLEKEKEGFICRLLRQRPRDIHSLSLLGARAVRGSCLMAFGPSFTLSPTHSSTLLSSLAAATSPSLWHGPSSSFSSSRAFRSSLRELDLSYCPGLQLDLLERALPALRHSLRSLSLRNTDHLLNDAAVTAILAQLAITTSXXXXNDEQSGGGEAEGVEAAEATPFDPSQAPGTTALLSLHLGTNTRRNARPGPELTDQALLVVGARCPLLQNLSVHNQVALTDDGVTGMVTALAQHARTXXXXXXXXXXXXXXXXXXKEAEGLTSPQPHLHALDLSLCSSISDRAVLALALHCQRLKRLSFRNCWRITTQAIQALLAKNPALVSLNLYSCTFVSPDAFDPRRFLLLPPGLLPGLPTGLAAAGMPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSLQEINLSYMRGLHDADLLSLSSLTFHGLREVSVAKCDQLTNEVVVRLCCDCKLEALNVADCLRVDASFVHL 556
            S+   +  LPVE+LT++FHHLP+CDLQM+GETC +LQRAVR+DA+LW HVE+P+QDGRLE+ KE F+CRLLRQRPRD+HSLSLLGARAVRG CLMAFG       T   + +S                         +SLRELDLS+CPGLQL LLERALPALRHSLRSLSLRNTDHLLND A+  IL++LA+                             PS   GTTAL+SLHLGT+TRR ARP P L+D ++ V+ A CP LQ+LS+HNQ  +TD G+  ++T                                 +P P L  LDL LC+S+SD+++L+LA HC  L+RLS RNCWR+TT A+QALL  NP LV+LNLY+CTF++PDAFDPRRF  LP                                          XXXXXXXX L+LQEINLSYMRGLHDADLLSLS+LT HGLREVS+AKCD +TNEV+V+LC DC+LEALN+ADCLR+DASF+H+
Sbjct:   31 SKRFPIAFLPVEILTVIFHHLPICDLQMVGETCQDLQRAVRHDASLWTHVEVPVQDGRLEQTKEEFLCRLLRQRPRDVHSLSLLGARAVRGDCLMAFG-------TPLPSAVSXXXXXXXXXXXXXXXXXXXXXXPSLTSLRELDLSHCPGLQLSLLERALPALRHSLRSLSLRNTDHLLNDDAIAVILSRLALPA---------------------------PS---GTTALISLHLGTSTRRAARPSPPLSDHSMRVIHAACPSLQSLSLHNQTRITDAGLHHLLT--------------------------------PTPLP-LSVLDLGLCASLSDQSILSLAAHCPSLRRLSLRNCWRLTTPAVQALLGTNPHLVALNLYACTFITPDAFDPRRFPFLP------------------------------------------XXXXXXXXRLALQEINLSYMRGLHDADLLSLSALTHHGLREVSIAKCDTVTNEVLVQLCADCRLEALNIADCLRIDASFIHM 446
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BLAST of NO25G01430 vs. NCBI_GenBank
Match: EWM21657.1 (Leucine-rich repeat, cysteine-containing subtype [Nannochloropsis gaditana])

HSP 1 Score: 164.9 bits (416), Expect = 1.200e-36
Identity = 82/119 (68.91%), Postives = 95/119 (79.83%), Query Frame = 0 
Query:  807 RGPTDRSVCLLARVLGRNLLILDLEGCVGVSDKGVSSLLVACHRLQRLVLSGLPRVTDRVFSEMLPNRGRRFVRLPCLVDLHLNSCGGVTPHMAQELKRQRPDIRRLSYRREVTLRGMT 926
            RGPTDRSV LLA+ LGRNL +LDLEGC GVS++G+ SL +ACHRLQRLVL+GLPRV D     +LP R R  +RLPCLVDL+LN C GV+ H  QELKRQRPDI R++YRREV LRG T
Sbjct:  135 RGPTDRSVLLLAKTLGRNLQVLDLEGCEGVSNQGLLSLFLACHRLQRLVLNGLPRVDDVAVQALLPRRNRH-LRLPCLVDLNLNVCRGVSLHAVQELKRQRPDILRVTYRREVALRGPT 252
The following BLAST results are available for this feature:
BLAST of NO25G01430 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM20975.12.700e-13252.84F-box domain, cyclin-like protein [Nannochloropsis... [more]
EWM21657.11.200e-3668.91Leucine-rich repeat, cysteine-containing subtype [... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL045nonsL045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR045ncniR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004280NSK004280Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G01430.1NO25G01430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673662gene_8744Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100738g1gene8773Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G01430.1NO25G01430.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G01430 ID=NO25G01430|Name=NO25G01430|organism=Nannochloropsis oceanica|type=gene|length=3093bp
ATGTCATCCTCCCCGCCGTCACCACAACCTAAGGCAAAAGTACAACCACC
ACCCCTTCCGGCCCGAGCAATAGCCGACCTTTCCCGACCTTCCTCCGTGA
CGTCTCTGCCAGTGGAGGTCTTGACGCTGGTCTTCCACCATCTGCCTGTC
TGTGATTTGCAGATGATGGGCGAGACATGTCATAACCTTCAACGTGCGGT
GAGATACGATGCCACCCTGTGGGCTCACGTTGAATTGCCTTTGCAAGACG
GCCGCTTGGAGAAGGAGAAAGAGGGCTTCATTTGCCGCCTTCTTCGTCAA
CGCCCTCGAGACATCCATTCTCTGTCGTTACTTGGCGCCCGAGCAGTCCG
GGGTAGTTGCCTTATGGCGTTTGGGCCTTCTTTTACCCTCTCCCCCACAC
ACTCCTCCACCCTACTCTCTTCCTTGGCCGCAGCCACCTCCCCTTCCCTC
TGGCATGGCCCCTCGTCCTCCTTCTCCTCCTCCCGTGCCTTTAGGTCTTC
CTTGCGCGAGCTAGATCTCTCATACTGCCCTGGTTTACAGCTCGACTTGT
TGGAGAGAGCCTTGCCGGCCTTGCGACACAGTCTCCGAAGCCTCTCCTTA
CGGAACACCGACCACTTACTGAACGATGCAGCTGTGACTGCTATCCTTGC
CCAGCTCGCCATCACCACCTCCACGACAGCCACTAACGACGAGCAATCTG
GAGGAGGAGAAGCAGAAGGAGTAGAAGCAGCAGAAGCAACACCCTTCGAT
CCATCGCAAGCACCGGGCACGACCGCCCTCCTTTCCCTCCACCTCGGCAC
CAACACCCGTCGCAATGCCCGCCCCGGCCCCGAGCTAACTGACCAAGCTC
TTCTGGTTGTAGGAGCTCGATGCCCTCTCCTTCAAAATCTCTCTGTGCAC
AATCAAGTTGCCCTGACCGATGACGGTGTCACGGGCATGGTCACTGCCTT
GGCACAGCATGCCAGAACAGCAACAGCTGCTGCTGCAGGAGGGGGAGGAG
GAAGAACAGCAGCAGAAGATCGAAAAGAAGCAGAGGGGCTAACTTCGCCC
CAACCCCATCTCCACGCTCTGGATCTCAGCCTCTGTTCCTCCATTTCCGA
CCGCGCTGTCCTCGCCCTCGCACTGCATTGCCAACGGCTGAAACGCCTCT
CCTTTCGTAACTGCTGGCGCATCACCACCCAAGCGATCCAAGCCCTCCTC
GCCAAAAATCCCGCCCTCGTTTCCCTCAACCTCTACTCCTGCACCTTTGT
CTCCCCCGATGCTTTCGACCCCCGTCGATTCCTTCTTCTCCCTCCCGGCC
TCCTTCCCGGCCTCCCTACAGGCCTCGCCGCTGCAGGCATGCCAGTCTAC
CACCAACCTCCTCCTCCTCCGCCTCCTTTTCATCCTCCTCCTTATCCTGC
CGCCTCCTCCTCTTCTTTTTCCTCCTCCTCCTCCTCCTCCCCTCTCCTCT
CCCTGCAGGAAATCAATCTTTCCTACATGAGGGGATTGCATGACGCCGAT
TTACTCTCCCTATCTTCTCTCACCTTCCATGGACTACGAGAGGTGTCCGT
CGCGAAATGCGACCAGCTTACAAACGAGGTGGTGGTACGATTGTGTTGTG
ATTGTAAACTCGAGGCTTTGAACGTGGCAGATTGCCTGAGGGTGGATGCC
TCGTTCGTCCACCTCCTCGCTGCTGCTGCTGCAGCTGCAGCTGGCGAAAG
AAGAGGAGACGATGAAGGAGCAGAAACTTTGAAAAGCTCTCCTTTTCAAG
CTTCCTACCCAGCCCGAGTCTTGCATGCCCTCCCTCCTTCCCTCCCTCCT
TCTCCCTCTCCCGCTAACCCCCTTCCCACATGTCGTCCTCATCCTCTTTC
TCGCCTTCATTCTCTGAATGCTCGCCACTGCCGAGGGTGGACTGACGAGA
CCACCGTCCTCCTCCTATCTCTCCAAGCCTGTGGTGCACAGAAATTGAGA
AGGCTTTACCTAGGAGGGACATCACTGGGGATAGGAGGGGAAGGAGGAGG
AAAAGGAGTAAGAGAATATGGTGATCTGGAAGGAGAGGATGCAAGTGGTC
GAGGGTCGGCAGGTGGGGGAGAGGAAGGAATGAGGGAAAGTTGGGGAGCA
GGGGATATGGTGCAGGAGGATGAAGAGGAGGAGGAGCAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGCGATGGTGGGATTGGGGGATT
GTTGTGATGACGAGGAGGAGGATGAAGTTATCCATGGGAGGGTATGTGCG
AGCGATGACCAGCTCTTGGTCGGACATACAGAGGAAGAGGAAATGGGCAG
GCATGAGGACGAGAGGGAGAATGAACACCATCATGACACTGCGGCCAAGC
GTAGGAGCAGTAGCAACGCCTCCAGCAGCCCCTACAAAGCCACCCCAACC
AAGAAAAAGCGTAAACCCCGAGGACCAACAGACCGGAGCGTCTGCCTCCT
CGCAAGAGTGCTGGGTCGGAATCTCCTCATTCTCGACCTTGAGGGCTGTG
TGGGTGTGAGCGACAAGGGGGTCTCCTCCCTTTTGGTAGCGTGCCACCGG
CTGCAGCGCCTGGTCTTATCGGGGCTGCCGCGCGTGACTGACCGTGTTTT
TTCGGAGATGCTGCCAAATAGGGGGAGGAGGTTTGTTAGGTTGCCCTGTT
TGGTGGACCTGCATTTGAACTCCTGTGGTGGTGTGACACCGCACATGGCT
CAGGAGTTGAAACGGCAACGACCGGACATACGTAGACTGTCGTATCGAAG
AGAGGTGACACTGAGAGGGATGACGCCTGGTTGAATTGACTAGCAAGTGA
TGCTAGGGGATCGAACGGATTGATGCAATAACAAATTAACGAACGATTAA
TTTTCTCTAAATCCCTCACTAGAGGATTGCATATGCATAAAGATAGGAAT
ATATATGTATGTGGGAAGGTATATAAATATAAGGTTTAATTGTAAGGGGA
TTTATGCGGGTGGTGATGGAGGAAATAGGTAATTGAAGGAAAAGAATAGA
GAGTTTGAAGAAGAGAGGCTGATTACTGCCATGTAAAAAAAGCTGACACG
CCAAGGGCGAAGAACAGGATGAAAACCTTTTTAAGAACGAACT
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protein sequence of NO25G01430.1

>NO25G01430.1-protein ID=NO25G01430.1-protein|Name=NO25G01430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=928bp
MSSSPPSPQPKAKVQPPPLPARAIADLSRPSSVTSLPVEVLTLVFHHLPV
CDLQMMGETCHNLQRAVRYDATLWAHVELPLQDGRLEKEKEGFICRLLRQ
RPRDIHSLSLLGARAVRGSCLMAFGPSFTLSPTHSSTLLSSLAAATSPSL
WHGPSSSFSSSRAFRSSLRELDLSYCPGLQLDLLERALPALRHSLRSLSL
RNTDHLLNDAAVTAILAQLAITTSTTATNDEQSGGGEAEGVEAAEATPFD
PSQAPGTTALLSLHLGTNTRRNARPGPELTDQALLVVGARCPLLQNLSVH
NQVALTDDGVTGMVTALAQHARTATAAAAGGGGGRTAAEDRKEAEGLTSP
QPHLHALDLSLCSSISDRAVLALALHCQRLKRLSFRNCWRITTQAIQALL
AKNPALVSLNLYSCTFVSPDAFDPRRFLLLPPGLLPGLPTGLAAAGMPVY
HQPPPPPPPFHPPPYPAASSSSFSSSSSSSPLLSLQEINLSYMRGLHDAD
LLSLSSLTFHGLREVSVAKCDQLTNEVVVRLCCDCKLEALNVADCLRVDA
SFVHLLAAAAAAAAGERRGDDEGAETLKSSPFQASYPARVLHALPPSLPP
SPSPANPLPTCRPHPLSRLHSLNARHCRGWTDETTVLLLSLQACGAQKLR
RLYLGGTSLGIGGEGGGKGVREYGDLEGEDASGRGSAGGGEEGMRESWGA
GDMVQEDEEEEEQEEEEEEEEEEEEEAMVGLGDCCDDEEEDEVIHGRVCA
SDDQLLVGHTEEEEMGRHEDERENEHHHDTAAKRRSSSNASSSPYKATPT
KKKRKPRGPTDRSVCLLARVLGRNLLILDLEGCVGVSDKGVSSLLVACHR
LQRLVLSGLPRVTDRVFSEMLPNRGRRFVRLPCLVDLHLNSCGGVTPHMA
QELKRQRPDIRRLSYRREVTLRGMTPG*
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Synonyms
Publications