NO25G01160, NO25G01160 (gene) Nannochloropsis oceanica

Overview
NameNO25G01160
Unique NameNO25G01160
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1522
Alignment locationchr25:318617..320138 -

Link to JBrowse

Properties
Property NameValue
DescriptionSmall nuclear ribonucleoprotein sm d1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:318617..320138 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
GO:0016043cellular component organization
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom
IPR027141LSm4/Sm_D1/D3
IPR001163Ribonucl_LSM
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
[Close]
BLAST of NO25G01160 vs. NCBI_GenBank
Match: XP_005853851.1 (small nuclear ribonucleoprotein D1, partial [Nannochloropsis gaditana CCMP526] >EKU22509.1 small nuclear ribonucleoprotein D1, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 183.3 bits (464), Expect = 4.600e-43
Identity = 92/94 (97.87%), Postives = 94/94 (100.00%), Query Frame = 0 
Query:    1 MKLVRFLMKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKSKIKPGAQ 95
            MKLVRFLMKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPK+K+KPGAQ
Sbjct:    1 MKLVRFLMKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKNKLKPGAQ 94
[Close]
BLAST of NO25G01160 vs. NCBI_GenBank
Match: EWM21620.1 (small nuclear ribonucleoprotein sm d1 [Nannochloropsis gaditana])

HSP 1 Score: 183.3 bits (464), Expect = 4.600e-43
Identity = 92/94 (97.87%), Postives = 94/94 (100.00%), Query Frame = 0 
Query:    1 MKLVRFLMKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKSKIKPGAQ 95
            MKLVRFLMKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPK+K+KPGAQ
Sbjct:    1 MKLVRFLMKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKNKLKPGAQ 94
[Close]
BLAST of NO25G01160 vs. NCBI_GenBank
Match: EWM21619.1 (small nuclear ribonucleoprotein sm d1 [Nannochloropsis gaditana])

HSP 1 Score: 171.4 bits (433), Expect = 1.800e-39
Identity = 85/87 (97.70%), Postives = 87/87 (100.00%), Query Frame = 0 
Query:    8 MKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKSKIKPGAQ 95
            MKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPK+K+KPGAQ
Sbjct:    1 MKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKNKLKPGAQ 87
[Close]
BLAST of NO25G01160 vs. NCBI_GenBank
Match: XP_003058037.1 (predicted protein [Micromonas pusilla CCMP1545] >EEH57988.1 predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 148.7 bits (374), Expect = 1.300e-32
Identity = 73/93 (78.49%), Postives = 82/93 (88.17%), Query Frame = 0 
Query:    1 MKLVRFLMKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKSKIKPGA 94
            MKLVRFL KL++ET TIELKNGT + GTI GVD+SMNT+LKNVK+TLKGKNPVS + LS+RGNNIRYYILPD+LNLD LLVDD PK K KPGA
Sbjct:    1 MKLVRFLQKLSHETCTIELKNGTVVHGTIMGVDISMNTHLKNVKMTLKGKNPVSMDHLSVRGNNIRYYILPDSLNLDTLLVDDTPKIKSKPGA 93
[Close]
BLAST of NO25G01160 vs. NCBI_GenBank
Match: CBJ31306.1 (Small nuclear ribonucleoprotein-associated protein D1 [Ectocarpus siliculosus])

HSP 1 Score: 147.1 bits (370), Expect = 3.700e-32
Identity = 73/97 (75.26%), Postives = 84/97 (86.60%), Query Frame = 0 
Query:    1 MKLVRFLMKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPK---SKIKPGAQ 95
            MKLVRFLMK+NNETVT+ELKNGTT+ GT++ VDVSMNT+LKNVKVT KGKNP +Y+SLSIRGNNIR YILPD LNLD LL+DD PK    K+K GA+
Sbjct:    1 MKLVRFLMKMNNETVTVELKNGTTVHGTVASVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKVKDGAR 97
[Close]
BLAST of NO25G01160 vs. NCBI_GenBank
Match: XP_015626285.1 (PREDICTED: small nuclear ribonucleoprotein Sm D1 [Oryza sativa Japonica Group] >BAD17484.1 putative small nuclear ribonucleoprotein D1 polypeptide 16kDa; snRNP core protein D1; Sm-D autoantigen [Oryza sativa Japonica Group] >BAF09182.1 Os02g0586500 [Oryza sativa Japonica Group] >EAZ23605.1 hypothetical protein OsJ_07305 [Oryza sativa Japonica Group] >BAS79467.1 Os02g0586500 [Oryza sativa Japonica Group])

HSP 1 Score: 147.1 bits (370), Expect = 3.700e-32
Identity = 70/90 (77.78%), Postives = 83/90 (92.22%), Query Frame = 0 
Query:    1 MKLVRFLMKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKSKIK 91
            MKLVRFLMKLNNETVTIELKNGTT+ GTI+GVD+SMNT+LK VK+TLKGKNPV+++ LS+RGNNIRYYILPD+LNL+ LLV+D P+ K K
Sbjct:    1 MKLVRFLMKLNNETVTIELKNGTTVHGTITGVDISMNTHLKTVKLTLKGKNPVTFDHLSVRGNNIRYYILPDSLNLETLLVEDTPRVKAK 90
[Close]
BLAST of NO25G01160 vs. NCBI_GenBank
Match: XP_003286100.1 (hypothetical protein DICPUDRAFT_77015 [Dictyostelium purpureum] >EGC37359.1 hypothetical protein DICPUDRAFT_77015 [Dictyostelium purpureum])

HSP 1 Score: 146.4 bits (368), Expect = 6.200e-32
Identity = 73/90 (81.11%), Postives = 83/90 (92.22%), Query Frame = 0 
Query:    1 MKLVRFLMKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKSKIK 91
            MKLVRFLMKL+NETVTIELKNGT +QGTI+GVDVSMNT+LK VK+TLKGKNPV+ ++LSIRGNNIRYYILP++LNL  LLVDD PKSK K
Sbjct:    1 MKLVRFLMKLHNETVTIELKNGTIVQGTIAGVDVSMNTHLKTVKLTLKGKNPVNLDTLSIRGNNIRYYILPESLNLGTLLVDDTPKSKPK 90
[Close]
BLAST of NO25G01160 vs. NCBI_GenBank
Match: XP_006647432.1 (PREDICTED: small nuclear ribonucleoprotein Sm D1 [Oryza brachyantha] >EAY86465.1 hypothetical protein OsI_07847 [Oryza sativa Indica Group])

HSP 1 Score: 145.6 bits (366), Expect = 1.100e-31
Identity = 70/90 (77.78%), Postives = 82/90 (91.11%), Query Frame = 0 
Query:    1 MKLVRFLMKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKSKIK 91
            MKLVRFLMKLNNETVTIELKNGTT+ GTI+GVD+SMNT+LK VK+TLKGKNPV+ + LS+RGNNIRYYILPD+LNL+ LLV+D P+ K K
Sbjct:    1 MKLVRFLMKLNNETVTIELKNGTTVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEDTPRVKAK 90
[Close]
BLAST of NO25G01160 vs. NCBI_GenBank
Match: OAE24293.1 (hypothetical protein AXG93_1052s1160 [Marchantia polymorpha subsp. ruderalis] >PTQ48594.1 hypothetical protein MARPO_0005s0217 [Marchantia polymorpha])

HSP 1 Score: 144.8 bits (364), Expect = 1.800e-31
Identity = 71/90 (78.89%), Postives = 80/90 (88.89%), Query Frame = 0 
Query:    1 MKLVRFLMKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKSKIK 91
            MKLVRFLMKLNNETVTIELKNGT + GTI+GVD+SMNT+LK VK+TL+GKNPV  + LSIRGNNIRYYILPD+LNLD LLVDD P+ K K
Sbjct:    1 MKLVRFLMKLNNETVTIELKNGTIVHGTITGVDISMNTHLKTVKLTLRGKNPVPLDHLSIRGNNIRYYILPDSLNLDTLLVDDTPRVKAK 90
[Close]
BLAST of NO25G01160 vs. NCBI_GenBank
Match: CCA22672.1 (small nuclear ribonucleoprotein Sm D1 putative [Albugo laibachii Nc14])

HSP 1 Score: 144.1 bits (362), Expect = 3.100e-31
Identity = 69/92 (75.00%), Postives = 82/92 (89.13%), Query Frame = 0 
Query:    1 MKLVRFLMKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKSKIKPG 93
            MKLVRFLMKL+NETVTIELKNGT + GTI+GVD+SMNT+LK VK+T KGKNP + ++LSIRGNNIRYYILPD+LNLD LL+DD P+ K+K G
Sbjct:    1 MKLVRFLMKLSNETVTIELKNGTIVHGTITGVDISMNTHLKAVKMTAKGKNPQTLDTLSIRGNNIRYYILPDSLNLDVLLIDDTPREKVKAG 92
The following BLAST results are available for this feature:
BLAST of NO25G01160 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005853851.14.600e-4397.87small nuclear ribonucleoprotein D1, partial [Nanno... [more]
EWM21620.14.600e-4397.87small nuclear ribonucleoprotein sm d1 [Nannochloro... [more]
EWM21619.11.800e-3997.70small nuclear ribonucleoprotein sm d1 [Nannochloro... [more]
XP_003058037.11.300e-3278.49predicted protein [Micromonas pusilla CCMP1545] >E... [more]
CBJ31306.13.700e-3275.26Small nuclear ribonucleoprotein-associated protein... [more]
XP_015626285.13.700e-3277.78PREDICTED: small nuclear ribonucleoprotein Sm D1 [... [more]
XP_003286100.16.200e-3281.11hypothetical protein DICPUDRAFT_77015 [Dictyosteli... [more]
XP_006647432.11.100e-3177.78PREDICTED: small nuclear ribonucleoprotein Sm D1 [... [more]
OAE24293.11.800e-3178.89hypothetical protein AXG93_1052s1160 [Marchantia p... [more]
CCA22672.13.100e-3175.00small nuclear ribonucleoprotein Sm D1 putative [Al... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL045nonsL045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR043ncniR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G01160.2NO25G01160.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO25G01160.1NO25G01160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|559771gene_8602Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100012g22gene8796Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G01160.2NO25G01160.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO25G01160.1NO25G01160.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G01160 ID=NO25G01160|Name=NO25G01160|organism=Nannochloropsis oceanica|type=gene|length=1522bp
TGGTGCCAAAATGCAACGACCCCGCGCCCTGACTTCTTCCTTCCTCTTAT
TATGCTTATTATGCTCTCAAGGCATATGTGTCTTGACCCAACTTACCAGG
CGTCTACCACGTTCACAGATGAGCTTGTCGAGAAATCCCCCTAGAGATGC
TAGTGATGGTGGTGGTGGTAAACTGCCGTAAAAGGACCACCCGGCATGCA
TGATACTGGGCCTCGCGCAACACTCACACCGCTCACACCCCTTTGCCCAA
CACACAGGCAGTGACTTTGCTCGCGTGCCATACTACGACAAGAGAAAAGC
TCAGATCGCTGCTTTGTCCGTCCACCTATCCACCGTTAGGGAGGAGAGCA
ACGTCCTGTTTCCTGATACTGGAGGGGAAGGCAAACAGCAAACACGACCA
TCGACGACCCACACGACAGCATAGCAATTCGTCAGGGCACATTGATTCGC
AGGCATCATGAAGCTTGTTAGgtacgtgtttgactgatagcatgggatgg
ggaggggaagagagggtggtagcaaatggagcgtgtgagataggcgcgca
tctgtatgtccgtcataatccacttccagggctccgtctacccactttcc
tcatccatcccatttctatcactgtgacccatagATTTTTGATGAAGCTC
AATAACGAGACGGTGACCATCGAGCTCAAGAACGGCACCACCATCCAAGG
CACAATTTCCGgtatgtaggttaggggggtgagcgggcttatgtagatta
tgtttgcgtcccttccctcgctttacctaattctgtgtgttcagaatggc
atccaaagcaggcttcggtgattagttttaggtcaatgcgcagtgtttga
agagaaatgctaccctcgcctttatctcttttgacatctcccctctttgc
ctcccttcctccatctctccgtctcttagGCGTGGATGTCTCTATGAACA
CCTACTTGAAGAACGTTAAGGTGACCCTAAAAGGCAAAAATCCCGTCTCT
TATGAATCGCTTTCCATCCGCGGGAACAATATCCGGTATTATATTCTACC
TGATGCATTGAATTTGGACGCATTGTTGGTTGATGATGGTCCGAAGAGCA
AAATCAAGCCAGGGGCACAAGCGGGAGGACGAGGACGAGGACGGGGAGTA
GGAGGAAGGGGAGGTGGTGGAGGGAGGGGAAGGGGAGGGCCGGGGGGAGG
GAGGGGGCGAGGGCGATTTTAAGGGAGGAAGGGGAGGAGTGTGGGGGCCG
TAAGTGGTAAAGACTCGGATTTAGAGCATCATGGTGCCGGAGGAACACTA
AAAGAAAGAGGATGAGCAGGAAGAGGAGAGGACGTAAGTCACTCCATTTC
CCCCACGTCAAATGTAATTTTGTGCTTCGCGGCAGCAGCAGCATGTTGAC
GATGGGTGAGTGCATTTAGTGCCGGCACGGCACGTATACTTACCACGATT
AATAAGCTACAGCACGTGGAACAATCAAAGAAGCAGAAACACAAAAAGCA
ACGAATGGAAGTGGCATAGAAG
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protein sequence of NO25G01160.2

>NO25G01160.2-protein ID=NO25G01160.2-protein|Name=NO25G01160.2|organism=Nannochloropsis oceanica|type=polypeptide|length=122bp
MLPSPLSLLTSPLFASLPPSLRLLGVDVSMNTYLKNVKVTLKGKNPVSYE
SLSIRGNNIRYYILPDALNLDALLVDDGPKSKIKPGAQAGGRGRGRGVGG
RGGGGGRGRGGPGGGRGRGRF*
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protein sequence of NO25G01160.1

>NO25G01160.1-protein ID=NO25G01160.1-protein|Name=NO25G01160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=128bp
MKLVRFLMKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGK
NPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKSKIKPGAQAGGRGR
GRGVGGRGGGGGRGRGGPGGGRGRGRF*
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Synonyms
Publications