NO25G01100, NO25G01100 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO25G01100 vs. NCBI_GenBank
Match: EWM21591.1 (dna repair protein xrcc3 [Nannochloropsis gaditana]) HSP 1 Score: 487.3 bits (1253), Expect = 4.200e-134 Identity = 256/339 (75.52%), Postives = 282/339 (83.19%), Query Frame = 0 Query: 24 AVAGLDLFPRPPRTAYDLYRDQSHTRRVSLGCPVLDATFGGGLPGHGIVDISGMAGAGKTQLMLQLLVQQVKDAESEWRNANYSTPFVAGRSFYLSTEGPLPAKRLADMAAAACPGDSGFAQRVLESVIIVEAKNVEDQLYLLTTQLPSLLADSSLGKIRLCVIDSMSALFRGEFSLSKGDTLERAKMIFAMAKQMKTLSDKFKIPFVVTNQVTADFQVGQAGQGGWEGG---MEGGGVQPALGLSWSNCVHSRYLLTRRDKNNVWPVASLPPSLPHSAITMEETGGINGSGSNSSQWVRQMRLLLSPSLPRDLSCQFVVETAGVRGVGGRGVALEEEG 360 + AG DLFPRPPRTAYDLY+D+ HTRRVSLGCPVLDA F GGLPGHG+V++SGMAGAGKTQLMLQLLVQQV+DAE+EWR A Y+TPFVAGRSFYLSTEGPLPAKRLA+MAAA CP DSGFAQRVLESVIIVEAKNVEDQLYLLTTQLPSLLAD+SLGKIRLCVIDSMSALFRGEFSLSK DTLERAKMIF MAKQMK LSD++ +PFVVTNQVTADF A G WEGG + G GVQPALGLSWSNCVH+R+LL+RRD NN P P S P S + S SS+W+R MRLLLSPSLP +LSC+FV+ETAGVRGV R + E+G Sbjct: 28 SAAGFDLFPRPPRTAYDLYQDEKHTRRVSLGCPVLDAAFRGGLPGHGVVEVSGMAGAGKTQLMLQLLVQQVRDAEAEWRRAKYATPFVAGRSFYLSTEGPLPAKRLAEMAAATCPEDSGFAQRVLESVIIVEAKNVEDQLYLLTTQLPSLLADASLGKIRLCVIDSMSALFRGEFSLSKMDTLERAKMIFTMAKQMKRLSDRWGLPFVVTNQVTADF--AAATFGVWEGGNADVVGDGVQPALGLSWSNCVHTRFLLSRRDANNRIPSFPTPGSNPPSNPATADA----RSTGQSSRWIRHMRLLLSPSLPSNLSCRFVLETAGVRGV--RRTEMNEDG 358
BLAST of NO25G01100 vs. NCBI_GenBank
Match: XP_011043968.1 (PREDICTED: DNA repair protein XRCC3 homolog [Populus euphratica]) HSP 1 Score: 145.2 bits (365), Expect = 3.900e-31 Identity = 112/330 (33.94%), Postives = 166/330 (50.30%), Query Frame = 0 Query: 35 PRTAYDLYRDQSHTRRVSLGCPVLDATFGGGLPGHGIVDISGMAGAGKTQLMLQLLVQQVKDAESEWRNANYSTPFVAG---RSFYLSTEGPLPAKRLADMAAA-ACPGDSGFAQRVLE-SVIIVEAKNVEDQLYLLTTQLPSLLADSSLG-KIRLCVIDSMSALFRGEFSLSKGDTLERAKMIFAMAKQMKTLSDKFKIPFVVTNQVTADFQVGQAGQG------GWEGGMEGGG--VQPALGLSWSNCVHSRYLLTRRDKNNVWPVASLPPSLPHSAITMEETG--GINGSGSNSSQWVRQMRLLLSPSLPRDLSCQFVVETAGVRGV 349 PR A+ + + SLGCP+LD GGG+P + I +I +G+GKTQL LQL ++ PF+ G S YL TE P P +RL +++A C FA I +++ N DQL + Q+ S L +S +R+ VIDSM+ALFR EF + D + R+ + F ++ ++K + +F + +VTNQV V +G+G G GM G V PALGLSW+NCV+SR L++ + E+G G+ S S + R++ ++ +P LP DLSC+FV+ GV GV Sbjct: 14 PRPAFMTPQKLLPVEKCSLGCPILDCCMGGGIPCNSITEIVAESGSGKTQLCLQLSLRA------------QLPPFLGGLSASSLYLYTEFPFPTRRLHQLSSALQCQYPQIFASNYDPCDNIFLQSVNTADQLLDIMPQIESFLENSKTRLPVRVIVIDSMAALFRAEFENTASDLIRRSSLFFKISGKLKEFAKRFNLVVLVTNQV---MDVVDSGEGVNEVRIGNLSGMYSSGRRVCPALGLSWANCVNSRLFLSKDE---------------------YESGLVGVGESAFLSRETRRRLHVVFAPHLP-DLSCEFVIRREGVVGV 306
BLAST of NO25G01100 vs. NCBI_GenBank
Match: APR64202.1 (hypothetical protein [Populus tomentosa]) HSP 1 Score: 142.5 bits (358), Expect = 2.500e-30 Identity = 109/315 (34.60%), Postives = 162/315 (51.43%), Query Frame = 0 Query: 50 RVSLGCPVLDATFGGGLPGHGIVDISGMAGAGKTQLMLQLLVQQVKDAESEWRNANYSTPFVAG---RSFYLSTEGPLPAKRLADMAAA-ACPGDSGFAQRVLE-SVIIVEAKNVEDQLYLLTTQLPSLLADSSLG-KIRLCVIDSMSALFRGEFSLSKGDTLERAKMIFAMAKQMKTLSDKFKIPFVVTNQVTADFQVGQAGQG------GWEGGMEGGG--VQPALGLSWSNCVHSRYLLTRRDKNNVWPVASLPPSLPHSAITMEETGGING--SGSNSSQWVRQMRLLLSPSLPRDLSCQFVVETAGVRGV 349 + SLGCP+LD GGG+P + I +I +G+GKTQL LQL ++ PF+ G S YL TE P P +RL ++++ C FA I +++ N DQL + Q+ S L +S +R+ VIDSM+ALFR EF + D + R+ + F ++ ++K + +F + +VTNQV V +G+G G GM G V PALGLSW+NCV+SR L++ + E+G + G SG S + R++ ++ +P LP DLSC+FV+ GV GV Sbjct: 29 KCSLGCPILDCCMGGGIPCNSITEIVAESGSGKTQLCLQLSLRA------------QLPPFLGGLSASSLYLYTEFPFPTRRLHQLSSSLQCQYPQIFASNYDPCDSIFLQSVNTADQLLDIMPQVESFLENSKTRLPVRVIVIDSMAALFRAEFENTASDLIRRSSLFFKISGKLKEFAKRFNLVVLVTNQV---MDVVDSGEGVNEVRIGNLSGMYSSGRRVCPALGLSWANCVNSRLFLSKDE---------------------YESGLVGGGESGFLSRETRRRLHVVFAPHLP-DLSCEFVIRREGVVGV 306
BLAST of NO25G01100 vs. NCBI_GenBank
Match: XP_024445852.1 (DNA repair protein XRCC3 homolog [Populus trichocarpa] >PNS93544.1 hypothetical protein POPTR_018G093100v3 [Populus trichocarpa]) HSP 1 Score: 142.1 bits (357), Expect = 3.300e-30 Identity = 109/315 (34.60%), Postives = 161/315 (51.11%), Query Frame = 0 Query: 50 RVSLGCPVLDATFGGGLPGHGIVDISGMAGAGKTQLMLQLLVQQVKDAESEWRNANYSTPFVAG---RSFYLSTEGPLPAKRLADMAAA-ACPGDSGFAQRVLE-SVIIVEAKNVEDQLYLLTTQLPSLLADSSLG-KIRLCVIDSMSALFRGEFSLSKGDTLERAKMIFAMAKQMKTLSDKFKIPFVVTNQVTADFQVGQAGQG------GWEGGMEGGG--VQPALGLSWSNCVHSRYLLTRRDKNNVWPVASLPPSLPHSAITMEETGGING--SGSNSSQWVRQMRLLLSPSLPRDLSCQFVVETAGVRGV 349 + SLGCP+LD GGG+P + I +I +G+GKTQL LQL ++ PF+ G S YL TE P P +RL +++A C F I +++ N DQL + Q+ S L +S +R+ VIDSM+ALFR EF + D + R+ + F ++ ++K + +F + +VTNQV V +G+G G GM G V PALGLSW+NCV+SR L++ + E+G + G SG S + R++ ++ +P LP DLSC+FV+ GV GV Sbjct: 29 KCSLGCPILDCCMGGGIPCNSITEIVAESGSGKTQLCLQLSLRA------------QLPPFLGGLSASSLYLYTEFPFPTRRLHQLSSALQCQYPQIFVSNYDPCDSIFLQSVNTADQLLDIMPQVESFLENSKTRLPVRVIVIDSMAALFRAEFENTASDLIRRSSLFFKISGKLKEFAKRFNLVVLVTNQV---MDVVDSGEGLNEVRIGNLSGMYSSGRRVCPALGLSWANCVNSRLFLSKDE---------------------YESGLVGGGESGFLSRETRRRLHVVFAPHLP-DLSCEFVIRREGVVGV 306
BLAST of NO25G01100 vs. NCBI_GenBank
Match: XP_004340140.1 (DNA repair protein XRCC3, putative [Acanthamoeba castellanii str. Neff] >ELR18120.1 DNA repair protein XRCC3, putative [Acanthamoeba castellanii str. Neff]) HSP 1 Score: 138.3 bits (347), Expect = 4.800e-29 Identity = 99/327 (30.28%), Postives = 160/327 (48.93%), Query Frame = 0 Query: 35 PRTAYDLYRDQSHTRRVSLGCPVLDATFGGGLPGHGIVDISGMAGAGKTQLMLQLLVQQVKDAESEWRNANYSTPFVAGRSFYLSTEGPLPAKRLADM--------AAAACPGDSGFAQRVLESVIIVEAKNVEDQLYLLTTQLPSLLADSSLGKIRLCVIDSMSALFRGEFSLSKGDTLERAKMIFAMAKQMKTLSDKFKIPFVVTNQVTADFQVGQAGQGGWEGGMEGGGVQPALGLSWSNCVHSRYLLTRRDKNNVWPVASLPPSLPHSAITMEETGGINGS-----GSNSSQWVRQMRLLLSPSLPRDLSCQFVVETAGVRGV 349 P A L D S T ++ LGCP+LD GGGL I +I+G AG+GKTQL LQL +Q E + G + Y+ TEG P +RL + A P GF R +++ I +++ + + Q+P L+ + +RL ++DS++AL R E+ +ER++++F+ A Q+K ++D+ ++ VV NQV+ + + + V PALGL+WSNC++SR LL++ V+S S + + +R M+++ SP +P + SC F++E GVRGV Sbjct: 93 PLPALALASDPSFTHKLKLGCPLLDQCLGGGLLPRHITEIAGEAGSGKTQLCLQLALQVQLPPEEGG---------LGGGAIYIGTEGNFPQRRLDQLHEAFRHKHAHVFPPRRKGFDLR--DNIYIKHVGSIDQLFHSMLKQVPPLVQQRN---VRLVIVDSIAALLRYEYGSGTSQMVERSRVLFSQANQLKQIADQLQVVVVVINQVSDYVDDSRLVLSDFAAHKK--RVVPALGLAWSNCINSRLLLSKTRSTYRGAVSSSTVSNASDDXXXXXXXXXRKPKKRRVSNEVTVGIRDMKVVFSPYIPNN-SCSFIIEGDGVRGV 402
BLAST of NO25G01100 vs. NCBI_GenBank
Match: XP_022153353.1 (DNA repair protein XRCC3 homolog [Momordica charantia]) HSP 1 Score: 138.3 bits (347), Expect = 4.800e-29 Identity = 97/308 (31.49%), Postives = 153/308 (49.68%), Query Frame = 0 Query: 48 TRRVSLGCPVLDATFGGGLPGHGIVDISGMAGAGKTQLMLQLLVQQVKDAESEWRNANYSTPFVAGRSFYLSTEGPLPAKRLADMAAAACPGDSGFAQRVLESVIIVEAKNVEDQLYLLTTQLPSLLAD-SSLGKIRLCVIDSMSALFRGEFSLSKGDTLERAKMIFAMAKQMKTLSDKFKIPFVVTNQVTADFQVGQAGQGGWEGG------MEGGGVQPALGLSWSNCVHSRYLLTRRDKNNVWPVASLPPSLPHSAITMEETGGINGSGSNSSQWVRQMRLLLSPSLPRDLSCQFVVETAGVRGV 349 +++ + GCP+LD GGG+P + + +I +G+GKTQL LQL + + NA+ S Y+ TE P P +RL ++ A C F+ I VE + DQL+ + ++ S LA+ S RL VIDS++ALFR +F + D R+ + F ++ ++K L+ ++ + V+TNQV D G G G V PALGL+W+NCV+SR L+R ++ + E INGS + R + ++ SP LP+ SC++++ GV GV Sbjct: 13 SQKCTFGCPILDRCAGGGVPCNSLTEIVAESGSGKTQLCLQLSLCAQLPLSNGGLNAS---------SLYIHTEFPFPLRRLQQLSRAFCSSYPQFSNTNPSDHIFVEXVHSADQLFDIMPKIESFLANRDSQFPTRLIVIDSIAALFRSDFENTPSDLKRRSALFFKISGKLKLLAKRYSLAVVLTNQV-VDLMGSSDGINAMRIGNLRYLCSSGRQVCPALGLAWANCVNSRLFLSRNEE-----------------VIQEGNSMINGSEVAQRKTRRWLHVVFSPHLPKS-SCEYIISREGVVGV 292
BLAST of NO25G01100 vs. NCBI_GenBank
Match: PON79568.1 (DNA recombination and repair protein [Trema orientalis]) HSP 1 Score: 138.3 bits (347), Expect = 4.800e-29 Identity = 108/311 (34.73%), Postives = 153/311 (49.20%), Query Frame = 0 Query: 48 TRRVSLGCPVLDATFGGGLPGHGIVDISGMAGAGKTQLMLQLLVQQVKDAESEWRNANYSTPFVAGRSFYLSTEGPLPAKRLADMA-AAACPGDSGFAQRVLESVIIVEAKNVEDQLYLLTTQLPSLLADSSLG-KIRLCVIDSMSALFRGEFSLSKGDTLERAKMIFAMAKQMKTLSDKFKIPFVVTNQVTADFQVGQAGQGGWEGGMEGG------GVQPALGLSWSNCVHSRYLLTRRDKNNVWPVASLPPSLPHSAITMEETGGIN-GSGSN-SSQWVRQMRLLLSPSLPRDLSCQFVVETAGVRGV 349 T + +LGCP+LD GG+P + + ++ +G GKTQL LQL + + S ++G S Y TE P P RL + A+ GDS I V A + DQL ++ S L S L +RL VIDS++ALFR EF + D R+ + F ++ Q+K+L+ +F + VVTNQV DF G G G G V PALGL+W+NCV+SR L+R ++ + EE +N G G N Q RQ+ +L +P LP+ S +FV+ GV GV Sbjct: 16 THKCTLGCPILDRCLDGGVPCNSVTELVAESGCGKTQLCLQLALSAQRP---------ISQGGLSGSSLYFHTEFPFPFHRLQQLCHASRLGGDS-------PDHIFVRAVHSADQLLDEMPRIESFLRYSKLRLPVRLIVIDSIAALFRSEFDNTPFDLKRRSSLFFKISGQLKSLAKRFDLAVVVTNQV-VDFMGENGGLNGLRIGNSGALYSSGRRVCPALGLAWANCVNSRLFLSRNEE-----------------VIGEENSSVNVGDGDNLRRQTRRQIHVLFAPHLPKS-STEFVIRREGVFGV 291
BLAST of NO25G01100 vs. NCBI_GenBank
Match: CBN75722.1 (expressed unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 136.7 bits (343), Expect = 1.400e-28 Identity = 86/246 (34.96%), Postives = 133/246 (54.07%), Query Frame = 0 Query: 37 TAYDLYRDQSHTRRVSLGCPVLDATFGGGLPGHGIVDISGMAGAGKTQLMLQLLVQQVKDAESEWRNANYSTPFVAGRSFYLST-EGPLPAKRLADMAAAACPGDSGFAQRVLESVIIVEAKNVEDQLYLLTTQLPSLLADSSLGKIRLCVIDSMSALFRGEFSLSKGDTLERAKMIFAMAKQMKTLSDKFKIPFVVTNQVTADFQVGQAGQGGWEGGMEGGGVQ--------PALGLSWSNCVHS 274 TA + +D + R+S GCP LDA F GG+ G+ +I+G AGAGKTQL LQLL+Q E+ + G+S+ L+ EG P++RL MA+ ++++E V I AK ++DQ+ ++ LP ++ + ++L VIDS++ALFR + +GD ER++++ +++QMK L D+ FVV NQVTA F G G PA+GL WS C+++ Sbjct: 62 TALAMSKDAARLDRLSFGCPSLDAAFEGGVRVQGVTEIAGEAGAGKTQLCLQLLLQAQLAPEAGG---------LGGKSYVLTCGEGDFPSRRLRQMASTYQSRHGVKPEKLMEGVCIQNAKTLDDQMMIIMEHLPHIMRSQN---VKLVVIDSIAALFRSDMGRGRGDIGERSRLLGRLSQQMKRLGDRHGAAFVVVNQVTARFGSSTIGGGXXXXXXXXXXXXXXXXXXXVPAMGLLWSQCINA 295
BLAST of NO25G01100 vs. NCBI_GenBank
Match: CAN60498.1 (hypothetical protein VITISV_027869 [Vitis vinifera]) HSP 1 Score: 136.7 bits (343), Expect = 1.400e-28 Identity = 109/317 (34.38%), Postives = 168/317 (53.00%), Query Frame = 0 Query: 48 TRRVSLGCPVLDATFGGGLPGHGIVDISGMAGAGKTQLMLQLLVQQVKDAESEWRNANYSTPFVAGRSFYLSTEGPLPAKRLADMAAAACPGDSGFAQRVLES------VIIVEAKNVEDQLYLLTTQLPS-LLADSSLGKIRLCVIDSMSALFRGEFSLSKGDTLERAKMIFAMAKQMKTLSDKFKIPFVVTNQVTADFQVGQAG-----QGGWEGGMEGGG--VQPALGLSWSNCVHSRYLLTRRDKNNVWPVASLPPSLPHSAITMEETG-GINGSGSNSSQWVRQ-MRLLLSPSLPRDLSCQFVVETAGVRGV 349 T++ +LGCP+LD GG+P + I ++ +G+GKTQL LQL++ S +A S Y+ +E P P++RL ++ + S VL+S ++V DQL+ + ++ S LL + +RL VIDS++ALFRGEF + D R+ + F ++ ++K L+++F + VVTNQV DF VGQAG + G G + G V ALGLSW+NCV+SR L+R ++ I E TG G G+G S+ R+ + ++ +P LP + SC+FV+ GV GV Sbjct: 1792 TQKCTLGCPILDRCLAGGVPCNSITELVAESGSGKTQLCLQLVLS---------AQLPTSLGGLAASSLYIHSEFPFPSRRLQQLSQSFRSSYS----HVLDSEYNPLDFVLVRGVQSADQLFDVLLKMDSVLLRPPTQLPVRLIVIDSIAALFRGEFENTPFDLKRRSSLFFKISGKLKALAERFGLAVVVTNQV-VDF-VGQAGGLNGLRVGNLGSLWSSGRRVCAALGLSWANCVNSRLFLSRNEE-----------------IVXEVTGLGGVGAGDTVSRLTRRHLHVIFAPHLP-ESSCEFVISREGVLGV 2075
BLAST of NO25G01100 vs. NCBI_GenBank
Match: XP_002268968.1 (PREDICTED: DNA repair protein XRCC3 homolog [Vitis vinifera]) HSP 1 Score: 136.0 bits (341), Expect = 2.400e-28 Identity = 107/315 (33.97%), Postives = 165/315 (52.38%), Query Frame = 0 Query: 48 TRRVSLGCPVLDATFGGGLPGHGIVDISGMAGAGKTQLMLQLLVQQVKDAESEWRNANYSTPFVAGRSFYLSTEGPLPAKRLADMAAAACPGDSGFAQRVLES------VIIVEAKNVEDQLYLLTTQLPS-LLADSSLGKIRLCVIDSMSALFRGEFSLSKGDTLERAKMIFAMAKQMKTLSDKFKIPFVVTNQVTADFQVGQAG-----QGGWEGGMEGGG--VQPALGLSWSNCVHSRYLLTRRDKNNVWPVASLPPSLPHSAITMEETGGINGSGSNSSQWVRQMRLLLSPSLPRDLSCQFVVETAGVRGV 349 T++ +LGCP+LD GG+P + I ++ +G+GKTQL LQL++ S +A S Y+ +E P P++RL ++ + S VL+S ++V DQL+ + ++ S LL + +RL VIDS++ALFRGEF + D R+ + F ++ ++K L+++F + VVTNQV DF VGQAG + G G + G V ALGLSW+NCV+SR L+R ++ V V L GG+ + S R + ++ +P LP + SC+FV+ GV GV Sbjct: 15 TQKCTLGCPILDRCLAGGVPCNSITELVAESGSGKTQLCLQLVLS---------AQLPTSLGGLAASSLYIHSEFPFPSRRLQQLSQSFRSSYS----HVLDSEYNPLDFVLVRGVQSADQLFDVLLKMDSVLLRPPTQLPVRLIVIDSIAALFRGEFENTPFDLKRRSSLFFKISGKLKALAERFGLAVVVTNQV-VDF-VGQAGGLNGLRVGNLGSLWSSGRRVCAALGLSWANCVNSRLFLSRNEE-IVGEVTGL--------------GGVGAGDTVSRLTRRHLHVIFAPHLP-ESSCEFVISREGVLGV 298 The following BLAST results are available for this feature:
BLAST of NO25G01100 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO25G01100 ID=NO25G01100|Name=NO25G01100|organism=Nannochloropsis oceanica|type=gene|length=1495bpback to top protein sequence of NO25G01100.1 >NO25G01100.1-protein ID=NO25G01100.1-protein|Name=NO25G01100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=360bpback to top Synonyms
Publications
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