NO25G01100, NO25G01100 (gene) Nannochloropsis oceanica

Overview
NameNO25G01100
Unique NameNO25G01100
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1495
Alignment locationchr25:304878..306372 -

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Properties
Property NameValue
DescriptionDna repair protein xrcc3
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:304878..306372 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0008094DNA-dependent ATPase activity
GO:0003677DNA binding
GO:0016787hydrolase activity
GO:0003677DNA binding
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO:0006950response to stress
GO:0006259DNA metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR020588RecA_ATP-bd
IPR013632DNA_recomb/repair_Rad51_C
Homology
BLAST of NO25G01100 vs. NCBI_GenBank
Match: EWM21591.1 (dna repair protein xrcc3 [Nannochloropsis gaditana])

HSP 1 Score: 487.3 bits (1253), Expect = 4.200e-134
Identity = 256/339 (75.52%), Postives = 282/339 (83.19%), Query Frame = 0
Query:   24 AVAGLDLFPRPPRTAYDLYRDQSHTRRVSLGCPVLDATFGGGLPGHGIVDISGMAGAGKTQLMLQLLVQQVKDAESEWRNANYSTPFVAGRSFYLSTEGPLPAKRLADMAAAACPGDSGFAQRVLESVIIVEAKNVEDQLYLLTTQLPSLLADSSLGKIRLCVIDSMSALFRGEFSLSKGDTLERAKMIFAMAKQMKTLSDKFKIPFVVTNQVTADFQVGQAGQGGWEGG---MEGGGVQPALGLSWSNCVHSRYLLTRRDKNNVWPVASLPPSLPHSAITMEETGGINGSGSNSSQWVRQMRLLLSPSLPRDLSCQFVVETAGVRGVGGRGVALEEEG 360
            + AG DLFPRPPRTAYDLY+D+ HTRRVSLGCPVLDA F GGLPGHG+V++SGMAGAGKTQLMLQLLVQQV+DAE+EWR A Y+TPFVAGRSFYLSTEGPLPAKRLA+MAAA CP DSGFAQRVLESVIIVEAKNVEDQLYLLTTQLPSLLAD+SLGKIRLCVIDSMSALFRGEFSLSK DTLERAKMIF MAKQMK LSD++ +PFVVTNQVTADF    A  G WEGG   + G GVQPALGLSWSNCVH+R+LL+RRD NN  P    P S P S     +      S   SS+W+R MRLLLSPSLP +LSC+FV+ETAGVRGV  R   + E+G
Sbjct:   28 SAAGFDLFPRPPRTAYDLYQDEKHTRRVSLGCPVLDAAFRGGLPGHGVVEVSGMAGAGKTQLMLQLLVQQVRDAEAEWRRAKYATPFVAGRSFYLSTEGPLPAKRLAEMAAATCPEDSGFAQRVLESVIIVEAKNVEDQLYLLTTQLPSLLADASLGKIRLCVIDSMSALFRGEFSLSKMDTLERAKMIFTMAKQMKRLSDRWGLPFVVTNQVTADF--AAATFGVWEGGNADVVGDGVQPALGLSWSNCVHTRFLLSRRDANNRIPSFPTPGSNPPSNPATADA----RSTGQSSRWIRHMRLLLSPSLPSNLSCRFVLETAGVRGV--RRTEMNEDG 358          
BLAST of NO25G01100 vs. NCBI_GenBank
Match: XP_011043968.1 (PREDICTED: DNA repair protein XRCC3 homolog [Populus euphratica])

HSP 1 Score: 145.2 bits (365), Expect = 3.900e-31
Identity = 112/330 (33.94%), Postives = 166/330 (50.30%), Query Frame = 0
Query:   35 PRTAYDLYRDQSHTRRVSLGCPVLDATFGGGLPGHGIVDISGMAGAGKTQLMLQLLVQQVKDAESEWRNANYSTPFVAG---RSFYLSTEGPLPAKRLADMAAA-ACPGDSGFAQRVLE-SVIIVEAKNVEDQLYLLTTQLPSLLADSSLG-KIRLCVIDSMSALFRGEFSLSKGDTLERAKMIFAMAKQMKTLSDKFKIPFVVTNQVTADFQVGQAGQG------GWEGGMEGGG--VQPALGLSWSNCVHSRYLLTRRDKNNVWPVASLPPSLPHSAITMEETG--GINGSGSNSSQWVRQMRLLLSPSLPRDLSCQFVVETAGVRGV 349
            PR A+   +      + SLGCP+LD   GGG+P + I +I   +G+GKTQL LQL ++                PF+ G    S YL TE P P +RL  +++A  C     FA        I +++ N  DQL  +  Q+ S L +S     +R+ VIDSM+ALFR EF  +  D + R+ + F ++ ++K  + +F +  +VTNQV     V  +G+G      G   GM   G  V PALGLSW+NCV+SR  L++ +                      E+G  G+  S   S +  R++ ++ +P LP DLSC+FV+   GV GV
Sbjct:   14 PRPAFMTPQKLLPVEKCSLGCPILDCCMGGGIPCNSITEIVAESGSGKTQLCLQLSLRA------------QLPPFLGGLSASSLYLYTEFPFPTRRLHQLSSALQCQYPQIFASNYDPCDNIFLQSVNTADQLLDIMPQIESFLENSKTRLPVRVIVIDSMAALFRAEFENTASDLIRRSSLFFKISGKLKEFAKRFNLVVLVTNQV---MDVVDSGEGVNEVRIGNLSGMYSSGRRVCPALGLSWANCVNSRLFLSKDE---------------------YESGLVGVGESAFLSRETRRRLHVVFAPHLP-DLSCEFVIRREGVVGV 306          
BLAST of NO25G01100 vs. NCBI_GenBank
Match: APR64202.1 (hypothetical protein [Populus tomentosa])

HSP 1 Score: 142.5 bits (358), Expect = 2.500e-30
Identity = 109/315 (34.60%), Postives = 162/315 (51.43%), Query Frame = 0
Query:   50 RVSLGCPVLDATFGGGLPGHGIVDISGMAGAGKTQLMLQLLVQQVKDAESEWRNANYSTPFVAG---RSFYLSTEGPLPAKRLADMAAA-ACPGDSGFAQRVLE-SVIIVEAKNVEDQLYLLTTQLPSLLADSSLG-KIRLCVIDSMSALFRGEFSLSKGDTLERAKMIFAMAKQMKTLSDKFKIPFVVTNQVTADFQVGQAGQG------GWEGGMEGGG--VQPALGLSWSNCVHSRYLLTRRDKNNVWPVASLPPSLPHSAITMEETGGING--SGSNSSQWVRQMRLLLSPSLPRDLSCQFVVETAGVRGV 349
            + SLGCP+LD   GGG+P + I +I   +G+GKTQL LQL ++                PF+ G    S YL TE P P +RL  ++++  C     FA        I +++ N  DQL  +  Q+ S L +S     +R+ VIDSM+ALFR EF  +  D + R+ + F ++ ++K  + +F +  +VTNQV     V  +G+G      G   GM   G  V PALGLSW+NCV+SR  L++ +                      E+G + G  SG  S +  R++ ++ +P LP DLSC+FV+   GV GV
Sbjct:   29 KCSLGCPILDCCMGGGIPCNSITEIVAESGSGKTQLCLQLSLRA------------QLPPFLGGLSASSLYLYTEFPFPTRRLHQLSSSLQCQYPQIFASNYDPCDSIFLQSVNTADQLLDIMPQVESFLENSKTRLPVRVIVIDSMAALFRAEFENTASDLIRRSSLFFKISGKLKEFAKRFNLVVLVTNQV---MDVVDSGEGVNEVRIGNLSGMYSSGRRVCPALGLSWANCVNSRLFLSKDE---------------------YESGLVGGGESGFLSRETRRRLHVVFAPHLP-DLSCEFVIRREGVVGV 306          
BLAST of NO25G01100 vs. NCBI_GenBank
Match: XP_024445852.1 (DNA repair protein XRCC3 homolog [Populus trichocarpa] >PNS93544.1 hypothetical protein POPTR_018G093100v3 [Populus trichocarpa])

HSP 1 Score: 142.1 bits (357), Expect = 3.300e-30
Identity = 109/315 (34.60%), Postives = 161/315 (51.11%), Query Frame = 0
Query:   50 RVSLGCPVLDATFGGGLPGHGIVDISGMAGAGKTQLMLQLLVQQVKDAESEWRNANYSTPFVAG---RSFYLSTEGPLPAKRLADMAAA-ACPGDSGFAQRVLE-SVIIVEAKNVEDQLYLLTTQLPSLLADSSLG-KIRLCVIDSMSALFRGEFSLSKGDTLERAKMIFAMAKQMKTLSDKFKIPFVVTNQVTADFQVGQAGQG------GWEGGMEGGG--VQPALGLSWSNCVHSRYLLTRRDKNNVWPVASLPPSLPHSAITMEETGGING--SGSNSSQWVRQMRLLLSPSLPRDLSCQFVVETAGVRGV 349
            + SLGCP+LD   GGG+P + I +I   +G+GKTQL LQL ++                PF+ G    S YL TE P P +RL  +++A  C     F         I +++ N  DQL  +  Q+ S L +S     +R+ VIDSM+ALFR EF  +  D + R+ + F ++ ++K  + +F +  +VTNQV     V  +G+G      G   GM   G  V PALGLSW+NCV+SR  L++ +                      E+G + G  SG  S +  R++ ++ +P LP DLSC+FV+   GV GV
Sbjct:   29 KCSLGCPILDCCMGGGIPCNSITEIVAESGSGKTQLCLQLSLRA------------QLPPFLGGLSASSLYLYTEFPFPTRRLHQLSSALQCQYPQIFVSNYDPCDSIFLQSVNTADQLLDIMPQVESFLENSKTRLPVRVIVIDSMAALFRAEFENTASDLIRRSSLFFKISGKLKEFAKRFNLVVLVTNQV---MDVVDSGEGLNEVRIGNLSGMYSSGRRVCPALGLSWANCVNSRLFLSKDE---------------------YESGLVGGGESGFLSRETRRRLHVVFAPHLP-DLSCEFVIRREGVVGV 306          
BLAST of NO25G01100 vs. NCBI_GenBank
Match: XP_004340140.1 (DNA repair protein XRCC3, putative [Acanthamoeba castellanii str. Neff] >ELR18120.1 DNA repair protein XRCC3, putative [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 138.3 bits (347), Expect = 4.800e-29
Identity = 99/327 (30.28%), Postives = 160/327 (48.93%), Query Frame = 0
Query:   35 PRTAYDLYRDQSHTRRVSLGCPVLDATFGGGLPGHGIVDISGMAGAGKTQLMLQLLVQQVKDAESEWRNANYSTPFVAGRSFYLSTEGPLPAKRLADM--------AAAACPGDSGFAQRVLESVIIVEAKNVEDQLYLLTTQLPSLLADSSLGKIRLCVIDSMSALFRGEFSLSKGDTLERAKMIFAMAKQMKTLSDKFKIPFVVTNQVTADFQVGQAGQGGWEGGMEGGGVQPALGLSWSNCVHSRYLLTRRDKNNVWPVASLPPSLPHSAITMEETGGINGS-----GSNSSQWVRQMRLLLSPSLPRDLSCQFVVETAGVRGV 349
            P  A  L  D S T ++ LGCP+LD   GGGL    I +I+G AG+GKTQL LQL +Q     E            + G + Y+ TEG  P +RL  +        A    P   GF  R  +++ I    +++   + +  Q+P L+   +   +RL ++DS++AL R E+       +ER++++F+ A Q+K ++D+ ++  VV NQV+      +     +    +   V PALGL+WSNC++SR LL++        V+S   S                       +  +  +R M+++ SP +P + SC F++E  GVRGV
Sbjct:   93 PLPALALASDPSFTHKLKLGCPLLDQCLGGGLLPRHITEIAGEAGSGKTQLCLQLALQVQLPPEEGG---------LGGGAIYIGTEGNFPQRRLDQLHEAFRHKHAHVFPPRRKGFDLR--DNIYIKHVGSIDQLFHSMLKQVPPLVQQRN---VRLVIVDSIAALLRYEYGSGTSQMVERSRVLFSQANQLKQIADQLQVVVVVINQVSDYVDDSRLVLSDFAAHKK--RVVPALGLAWSNCINSRLLLSKTRSTYRGAVSSSTVSNASDDXXXXXXXXXRKPKKRRVSNEVTVGIRDMKVVFSPYIPNN-SCSFIIEGDGVRGV 402          
BLAST of NO25G01100 vs. NCBI_GenBank
Match: XP_022153353.1 (DNA repair protein XRCC3 homolog [Momordica charantia])

HSP 1 Score: 138.3 bits (347), Expect = 4.800e-29
Identity = 97/308 (31.49%), Postives = 153/308 (49.68%), Query Frame = 0
Query:   48 TRRVSLGCPVLDATFGGGLPGHGIVDISGMAGAGKTQLMLQLLVQQVKDAESEWRNANYSTPFVAGRSFYLSTEGPLPAKRLADMAAAACPGDSGFAQRVLESVIIVEAKNVEDQLYLLTTQLPSLLAD-SSLGKIRLCVIDSMSALFRGEFSLSKGDTLERAKMIFAMAKQMKTLSDKFKIPFVVTNQVTADFQVGQAGQGGWEGG------MEGGGVQPALGLSWSNCVHSRYLLTRRDKNNVWPVASLPPSLPHSAITMEETGGINGSGSNSSQWVRQMRLLLSPSLPRDLSCQFVVETAGVRGV 349
            +++ + GCP+LD   GGG+P + + +I   +G+GKTQL LQL +       +   NA+         S Y+ TE P P +RL  ++ A C     F+       I VE  +  DQL+ +  ++ S LA+  S    RL VIDS++ALFR +F  +  D   R+ + F ++ ++K L+ ++ +  V+TNQV  D      G      G        G  V PALGL+W+NCV+SR  L+R ++                 +  E    INGS     +  R + ++ SP LP+  SC++++   GV GV
Sbjct:   13 SQKCTFGCPILDRCAGGGVPCNSLTEIVAESGSGKTQLCLQLSLCAQLPLSNGGLNAS---------SLYIHTEFPFPLRRLQQLSRAFCSSYPQFSNTNPSDHIFVEXVHSADQLFDIMPKIESFLANRDSQFPTRLIVIDSIAALFRSDFENTPSDLKRRSALFFKISGKLKLLAKRYSLAVVLTNQV-VDLMGSSDGINAMRIGNLRYLCSSGRQVCPALGLAWANCVNSRLFLSRNEE-----------------VIQEGNSMINGSEVAQRKTRRWLHVVFSPHLPKS-SCEYIISREGVVGV 292          
BLAST of NO25G01100 vs. NCBI_GenBank
Match: PON79568.1 (DNA recombination and repair protein [Trema orientalis])

HSP 1 Score: 138.3 bits (347), Expect = 4.800e-29
Identity = 108/311 (34.73%), Postives = 153/311 (49.20%), Query Frame = 0
Query:   48 TRRVSLGCPVLDATFGGGLPGHGIVDISGMAGAGKTQLMLQLLVQQVKDAESEWRNANYSTPFVAGRSFYLSTEGPLPAKRLADMA-AAACPGDSGFAQRVLESVIIVEAKNVEDQLYLLTTQLPSLLADSSLG-KIRLCVIDSMSALFRGEFSLSKGDTLERAKMIFAMAKQMKTLSDKFKIPFVVTNQVTADFQVGQAGQGGWEGGMEGG------GVQPALGLSWSNCVHSRYLLTRRDKNNVWPVASLPPSLPHSAITMEETGGIN-GSGSN-SSQWVRQMRLLLSPSLPRDLSCQFVVETAGVRGV 349
            T + +LGCP+LD    GG+P + + ++   +G GKTQL LQL +   +           S   ++G S Y  TE P P  RL  +  A+   GDS          I V A +  DQL     ++ S L  S L   +RL VIDS++ALFR EF  +  D   R+ + F ++ Q+K+L+ +F +  VVTNQV  DF     G  G   G  G        V PALGL+W+NCV+SR  L+R ++                 +  EE   +N G G N   Q  RQ+ +L +P LP+  S +FV+   GV GV
Sbjct:   16 THKCTLGCPILDRCLDGGVPCNSVTELVAESGCGKTQLCLQLALSAQRP---------ISQGGLSGSSLYFHTEFPFPFHRLQQLCHASRLGGDS-------PDHIFVRAVHSADQLLDEMPRIESFLRYSKLRLPVRLIVIDSIAALFRSEFDNTPFDLKRRSSLFFKISGQLKSLAKRFDLAVVVTNQV-VDFMGENGGLNGLRIGNSGALYSSGRRVCPALGLAWANCVNSRLFLSRNEE-----------------VIGEENSSVNVGDGDNLRRQTRRQIHVLFAPHLPKS-STEFVIRREGVFGV 291          
BLAST of NO25G01100 vs. NCBI_GenBank
Match: CBN75722.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 136.7 bits (343), Expect = 1.400e-28
Identity = 86/246 (34.96%), Postives = 133/246 (54.07%), Query Frame = 0
Query:   37 TAYDLYRDQSHTRRVSLGCPVLDATFGGGLPGHGIVDISGMAGAGKTQLMLQLLVQQVKDAESEWRNANYSTPFVAGRSFYLST-EGPLPAKRLADMAAAACPGDSGFAQRVLESVIIVEAKNVEDQLYLLTTQLPSLLADSSLGKIRLCVIDSMSALFRGEFSLSKGDTLERAKMIFAMAKQMKTLSDKFKIPFVVTNQVTADFQVGQAGQGGWEGGMEGGGVQ--------PALGLSWSNCVHS 274
            TA  + +D +   R+S GCP LDA F GG+   G+ +I+G AGAGKTQL LQLL+Q     E+           + G+S+ L+  EG  P++RL  MA+          ++++E V I  AK ++DQ+ ++   LP ++   +   ++L VIDS++ALFR +    +GD  ER++++  +++QMK L D+    FVV NQVTA F     G G                    PA+GL WS C+++
Sbjct:   62 TALAMSKDAARLDRLSFGCPSLDAAFEGGVRVQGVTEIAGEAGAGKTQLCLQLLLQAQLAPEAGG---------LGGKSYVLTCGEGDFPSRRLRQMASTYQSRHGVKPEKLMEGVCIQNAKTLDDQMMIIMEHLPHIMRSQN---VKLVVIDSIAALFRSDMGRGRGDIGERSRLLGRLSQQMKRLGDRHGAAFVVVNQVTARFGSSTIGGGXXXXXXXXXXXXXXXXXXXVPAMGLLWSQCINA 295          
BLAST of NO25G01100 vs. NCBI_GenBank
Match: CAN60498.1 (hypothetical protein VITISV_027869 [Vitis vinifera])

HSP 1 Score: 136.7 bits (343), Expect = 1.400e-28
Identity = 109/317 (34.38%), Postives = 168/317 (53.00%), Query Frame = 0
Query:   48 TRRVSLGCPVLDATFGGGLPGHGIVDISGMAGAGKTQLMLQLLVQQVKDAESEWRNANYSTPFVAGRSFYLSTEGPLPAKRLADMAAAACPGDSGFAQRVLES------VIIVEAKNVEDQLYLLTTQLPS-LLADSSLGKIRLCVIDSMSALFRGEFSLSKGDTLERAKMIFAMAKQMKTLSDKFKIPFVVTNQVTADFQVGQAG-----QGGWEGGMEGGG--VQPALGLSWSNCVHSRYLLTRRDKNNVWPVASLPPSLPHSAITMEETG-GINGSGSNSSQWVRQ-MRLLLSPSLPRDLSCQFVVETAGVRGV 349
            T++ +LGCP+LD    GG+P + I ++   +G+GKTQL LQL++               S   +A  S Y+ +E P P++RL  ++ +     S     VL+S       ++V      DQL+ +  ++ S LL   +   +RL VIDS++ALFRGEF  +  D   R+ + F ++ ++K L+++F +  VVTNQV  DF VGQAG     + G  G +   G  V  ALGLSW+NCV+SR  L+R ++                 I  E TG G  G+G   S+  R+ + ++ +P LP + SC+FV+   GV GV
Sbjct: 1792 TQKCTLGCPILDRCLAGGVPCNSITELVAESGSGKTQLCLQLVLS---------AQLPTSLGGLAASSLYIHSEFPFPSRRLQQLSQSFRSSYS----HVLDSEYNPLDFVLVRGVQSADQLFDVLLKMDSVLLRPPTQLPVRLIVIDSIAALFRGEFENTPFDLKRRSSLFFKISGKLKALAERFGLAVVVTNQV-VDF-VGQAGGLNGLRVGNLGSLWSSGRRVCAALGLSWANCVNSRLFLSRNEE-----------------IVXEVTGLGGVGAGDTVSRLTRRHLHVIFAPHLP-ESSCEFVISREGVLGV 2075          
BLAST of NO25G01100 vs. NCBI_GenBank
Match: XP_002268968.1 (PREDICTED: DNA repair protein XRCC3 homolog [Vitis vinifera])

HSP 1 Score: 136.0 bits (341), Expect = 2.400e-28
Identity = 107/315 (33.97%), Postives = 165/315 (52.38%), Query Frame = 0
Query:   48 TRRVSLGCPVLDATFGGGLPGHGIVDISGMAGAGKTQLMLQLLVQQVKDAESEWRNANYSTPFVAGRSFYLSTEGPLPAKRLADMAAAACPGDSGFAQRVLES------VIIVEAKNVEDQLYLLTTQLPS-LLADSSLGKIRLCVIDSMSALFRGEFSLSKGDTLERAKMIFAMAKQMKTLSDKFKIPFVVTNQVTADFQVGQAG-----QGGWEGGMEGGG--VQPALGLSWSNCVHSRYLLTRRDKNNVWPVASLPPSLPHSAITMEETGGINGSGSNSSQWVRQMRLLLSPSLPRDLSCQFVVETAGVRGV 349
            T++ +LGCP+LD    GG+P + I ++   +G+GKTQL LQL++               S   +A  S Y+ +E P P++RL  ++ +     S     VL+S       ++V      DQL+ +  ++ S LL   +   +RL VIDS++ALFRGEF  +  D   R+ + F ++ ++K L+++F +  VVTNQV  DF VGQAG     + G  G +   G  V  ALGLSW+NCV+SR  L+R ++  V  V  L              GG+    + S    R + ++ +P LP + SC+FV+   GV GV
Sbjct:   15 TQKCTLGCPILDRCLAGGVPCNSITELVAESGSGKTQLCLQLVLS---------AQLPTSLGGLAASSLYIHSEFPFPSRRLQQLSQSFRSSYS----HVLDSEYNPLDFVLVRGVQSADQLFDVLLKMDSVLLRPPTQLPVRLIVIDSIAALFRGEFENTPFDLKRRSSLFFKISGKLKALAERFGLAVVVTNQV-VDF-VGQAGGLNGLRVGNLGSLWSSGRRVCAALGLSWANCVNSRLFLSRNEE-IVGEVTGL--------------GGVGAGDTVSRLTRRHLHVIFAPHLP-ESSCEFVISREGVLGV 298          
The following BLAST results are available for this feature:
BLAST of NO25G01100 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21591.14.200e-13475.52dna repair protein xrcc3 [Nannochloropsis gaditana... [more]
XP_011043968.13.900e-3133.94PREDICTED: DNA repair protein XRCC3 homolog [Popul... [more]
APR64202.12.500e-3034.60hypothetical protein [Populus tomentosa][more]
XP_024445852.13.300e-3034.60DNA repair protein XRCC3 homolog [Populus trichoca... [more]
XP_004340140.14.800e-2930.28DNA repair protein XRCC3, putative [Acanthamoeba c... [more]
XP_022153353.14.800e-2931.49DNA repair protein XRCC3 homolog [Momordica charan... [more]
PON79568.14.800e-2934.73DNA recombination and repair protein [Trema orient... [more]
CBN75722.11.400e-2834.96expressed unknown protein [Ectocarpus siliculosus][more]
CAN60498.11.400e-2834.38hypothetical protein VITISV_027869 [Vitis vinifera... [more]
XP_002268968.12.400e-2833.97PREDICTED: DNA repair protein XRCC3 homolog [Vitis... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL045nonsL045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR043ncniR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004319NSK004319Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G01100.1NO25G01100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603275gene_8595Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100012g28gene8802Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G01100.1NO25G01100.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G01100 ID=NO25G01100|Name=NO25G01100|organism=Nannochloropsis oceanica|type=gene|length=1495bp
ATGTCAACAGCAACGACAACGACGACGCTTCTTAGGAATAATAATAATCC
CGACCATCACGAGACAGGAGCGGTCGCGGGTCTGGACCTCTTTCCTCGTC
CTCCGCGCACGGCTTATGATTTGTATCGGgtacgtgtcaggagtgacgat
tgccggaggaggatggggagggacgagggaggagaaagcatgttcgagga
tgagtgtgtgtgtgcttggaccatggaagcaagcaacgattgattttaca
cgtggtatttatgccttgtttcaaaacttttgcgaaccaagccgaacagc
accgcccgcacattcagatcctccctccctccgtctctcgcttcacttct
tgcctgaaacagGACCAAAGCCACACTCGTCGTGTCTCGCTTGGTTGTCC
TGTGCTCGACGCCACATTCGGTGGGGGGCTACCTGGTCACGGCATAGTGG
ACATCTCGGGCATGGCGGGTGCAGGGAAGACACAACTGATGCTCCAGTTG
TTGGTACAGCAAGTGAAGGACGCAGAGAGCGAGTGGCGGAATGCGAATTA
TTCGACGCCGTTTGTAGCGGGTCGTTCTTTTTATCTCTCGACCGAAGGTC
CGCTCCCAGCAAAGCGGCTTGCTGACATGGCCGCTGCTGCGTGCCCTGGA
GACAGTGGCTTCGCTCAGCGGGTGCTGGAGAGTGTGATTATCGTGGAGGC
GAAGAATGTGGAGGATCAGCTGTACCTCCTGACGACCCAATTGCCCTCTT
TGCTGGCCGATTCTTCTCTTGgtgagttgagtccttttgtttgtttcaac
caatcacttgattgactgtttgattatttatatattcatgtattcatgca
ttcatcttattattccctccctatctccctcccttcctccctatttcccg
cctacccccctcctttccatccctcccttcctccccccctccttccaaac
cagGTAAAATCCGTCTGTGTGTTATCGATTCCATGTCCGCCCTCTTTCGT
GGAGAGTTTTCCTTATCCAAAGGCGACACGTTGGAGAGAGCCAAGATGAT
CTTTGCCATGGCCAAACAAATGAAGACACTTTCCGACAAATTCAAAATTC
CGTTTGTGGTAACGAACCAAGTAACGGCCGATTTCCAGGTTGGGCAAGCA
GGACAGGGAGGATGGGAGGGAGGGATGGAAGGAGGGGGAGTACAGCCGGC
CTTGGGGCTTAGTTGGTCGAATTGTGTGCATTCGCGGTATTTGCTCACAC
GGCGGGACAAGAACAATGTGTGGCCCGTGGCCTCCCTCCCTCCCTCCCTC
CCACATTCGGCTATAACCATGGAAGAGACGGGTGGGATCAATGGCAGCGG
CAGCAATAGCAGTCAGTGGGTGAGGCAGATGCGTTTGTTGCTTTCCCCTT
CCCTCCCACGCGACCTGTCGTGTCAATTTGTGGTCGAGACGGCGGGGGTG
CGAGGAGTGGGAGGAAGGGGAGTGGCGTTGGAGGAGGAAGGTTGA
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protein sequence of NO25G01100.1

>NO25G01100.1-protein ID=NO25G01100.1-protein|Name=NO25G01100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=360bp
MSTATTTTTLLRNNNNPDHHETGAVAGLDLFPRPPRTAYDLYRDQSHTRR
VSLGCPVLDATFGGGLPGHGIVDISGMAGAGKTQLMLQLLVQQVKDAESE
WRNANYSTPFVAGRSFYLSTEGPLPAKRLADMAAAACPGDSGFAQRVLES
VIIVEAKNVEDQLYLLTTQLPSLLADSSLGKIRLCVIDSMSALFRGEFSL
SKGDTLERAKMIFAMAKQMKTLSDKFKIPFVVTNQVTADFQVGQAGQGGW
EGGMEGGGVQPALGLSWSNCVHSRYLLTRRDKNNVWPVASLPPSLPHSAI
TMEETGGINGSGSNSSQWVRQMRLLLSPSLPRDLSCQFVVETAGVRGVGG
RGVALEEEG*
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Synonyms
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