NO25G01070, NO25G01070 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO25G01070 vs. NCBI_GenBank
Match: EWM21621.1 (transcription elongation factor [Nannochloropsis gaditana]) HSP 1 Score: 405.2 bits (1040), Expect = 2.100e-109 Identity = 241/361 (66.76%), Postives = 267/361 (73.96%), Query Frame = 0 Query: 3 SSKLTDLVTDLAVKLEKVCDPSHLDAARAQDLLGDLEEIDMTVDLLKLSKAGFAVKKCKAVKAEAGIFDAVNERAGLLLKKWKKVVASPA----GIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYLAQSEAAALD--LPPARLKIANLFLALFLKYPEGQEDASRAARVAVDIEQAMQDVADYRNASKQYGDKARSLKYNLDTNEHLRLRVVLGDLRPLTLVGMKPEDMQPEEHRQAAEAAAALAYEANLLDWQDKNADKIRAKLGIEDVGGSFTCGRCKGNKTSYQAKQTRSSDEPMTMFVRCLTCGNRWKE 358 S+KLT+LVTDLAVKLEK C+P+ LDAA A D+LG+LE IDMTVD+LK SKAGFAVKKCKAVKA+ G F +V ERA LL KKWK+ VA+P+ G XXXXXXXXXXXXXXXXX S+LA +EAA L+ LPP+RLKIANLFLALFLKYPEGQED RAARVAVDIEQAMQ+V D++ A+KQYGDKARSLKYNL NEHLR+RV+L D+ P LV MK ++MQPEEHRQAAEAAAALAYEANLLDW DKNADKIR +LGIEDVGGSFTCGRCKGNKTSYQAKQTRSSDEPMTMFVRCLTCGNRWKE Sbjct: 8 SNKLTELVTDLAVKLEKACEPARLDAALAGDVLGELETIDMTVDILKKSKAGFAVKKCKAVKAD-GAFASVCERASLLFKKWKRAVATPSDPTRGGEKATNGRPSESLSTASVNSGPATSISPLTCGGSQGKARNGEPVVEGNAPPPSSGPSXXXXXXXXXXXXXXXXXVLSHLASAEAAILEDSLPPSRLKIANLFLALFLKYPEGQEDPGRAARVAVDIEQAMQNVMDHKLAAKQYGDKARSLKYNLGMNEHLRMRVILSDVAPAVLVAMKADEMQPEEHRQAAEAAAALAYEANLLDWHDKNADKIRKQLGIEDVGGSFTCGRCKGNKTSYQAKQTRSSDEPMTMFVRCLTCGNRWKE 367
BLAST of NO25G01070 vs. NCBI_GenBank
Match: CBJ32824.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 139.0 bits (349), Expect = 2.800e-29 Identity = 78/187 (41.71%), Postives = 101/187 (54.01%), Query Frame = 0 Query: 170 SYLAQSEAAALDLPPARLKIANLFLALFLKYPEGQEDASRAARVAVDIEQAMQDVADYRNASKQYGDKARSLKYNLDTNEHLRLRVVLGDLRPLTLVGMKPEDMQPEEHRQAAEAAAALAYEANLLDWQDKNADKIRAKLGIEDVGGSFTCGRCKGNKTSYQAKQTRSSDEPMTMFVRCLTCGNRWK 357 S L+ E A L L R L L +++ ARVA +E AM + Y + Y DKAR L +NL N+ LR V G + P LV M ++ ++ R+A + A + EA +LDW DKN DKI + GI++ G F CGRCK KT+Y KQTRS+DEPMT FV C C NRWK Sbjct: 189 SILSDDEPAPLRLKMRRKMFDTLLLG------SSEDERIPTARVAKGVECAMNENNPYLSKKASYLDKARQLVFNLKKNDQLRQDVREGLVEPQRLVAMTSTELMAKDKREAMDKAVSERTEARMLDWYDKNEDKINKQCGIKETDGMFECGRCKSTKTTYTQKQTRSADEPMTTFVTCSNCKNRWK 369
BLAST of NO25G01070 vs. NCBI_GenBank
Match: GAX13721.1 (transcription elongation factor S-II [Fistulifera solaris]) HSP 1 Score: 128.3 bits (321), Expect = 4.900e-26 Identity = 77/186 (41.40%), Postives = 97/186 (52.15%), Query Frame = 0 Query: 181 DLPPARLKIANLFLALFLKYPEGQEDASRA-------ARVAVDIEQAMQDVADYRNASKQYGDKARSLKYNLDTNEHLRLRVVLGDLRPLTLVGMKPEDMQPEEHRQAAEAAAALAYEANLLDWQDKNADKIRAKLGIED---VGGSFTCGRCKGNKTSYQAKQTRSSDEPMTMFVRCLTCGNRWK 357 DLPP R I L L+ + D A A AVD+E A+ D D K Y DKARS+ +NL N+ L + ++ G P LV M PE + + RQA E A ++ LDW+ N KI GI+ FTCGRCK KT+ KQTRS+DEPMT+FV C+ CGNRWK Sbjct: 126 DLPPNRQSICQKLFEL-LELAKSHLDGMSAEAMQEALAHTAVDVEAAIHDNND--KDRKAYSDKARSIAFNLKKNQQLAVDLIFGSTSPDELVHMSPEQLASADQRQAREEQAKKLTDSRRLDWEVANEAKINEMCGIKGDLLKASLFTCGRCKSTKTTSTQKQTRSADEPMTVFVLCMNCGNRWK 308
BLAST of NO25G01070 vs. NCBI_GenBank
Match: GAX11069.1 (transcription elongation factor S-II [Fistulifera solaris]) HSP 1 Score: 126.7 bits (317), Expect = 1.400e-25 Identity = 78/185 (42.16%), Postives = 97/185 (52.43%), Query Frame = 0 Query: 181 DLPPARLKIA-NLFLALFLKYPEGQEDASRA-----ARVAVDIEQAMQDVADYRNASKQYGDKARSLKYNLDTNEHLRLRVVLGDLRPLTLVGMKPEDMQPEEHRQAAEAAAALAYEANLLDWQDKNADKIRAKLGIED---VGGSFTCGRCKGNKTSYQAKQTRSSDEPMTMFVRCLTCGNRWK 357 DLPP R I LF L L E + A A AVD+E A+ D D K Y DKARS+ +NL N+ L + ++ G P L M PE + + RQA E A ++ LDW+ N KI GI+ FTCGRCK KT+ KQTRS+DEPMT+FV C+ CGNRWK Sbjct: 126 DLPPHRQSICQKLFELLELAKSHLDEMSVEAIREAIAHTAVDVEAAIHDNND--KDRKAYSDKARSIAFNLKKNQQLAVDLIFGSTSPDELAHMSPEQLASADQRQAREEQAKKLTDSRRLDWEVANEAKINEMCGIKGDLLKASLFTCGRCKSTKTTSTQKQTRSADEPMTVFVLCMNCGNRWK 308
BLAST of NO25G01070 vs. NCBI_GenBank
Match: XP_009837729.1 (transcription elongation factor S-II [Aphanomyces astaci] >ETV72943.1 transcription elongation factor S-II [Aphanomyces astaci]) HSP 1 Score: 123.6 bits (309), Expect = 1.200e-24 Identity = 69/165 (41.82%), Postives = 88/165 (53.33%), Query Frame = 0 Query: 198 LKYPEGQEDASRAARVAVDIEQA------MQDVADYRNASKQYGDKARSLKYNLDTNEHLRLRVVLGDLRPLTLVGMKPEDMQPEEHRQAAEAAAALAYEANLLDWQDKNADKIRAKLGIEDVGGSFTCGRCKGNKTSYQAKQTRSSDEPMTMFVRCLTCGNRWK 357 L E E + A VAV IE A M + K Y DK R + +NL NE LR ++ + L+ M P++M EE R+ + A++ LDW + NADKI GI+D G FTCGRCK KTS +QTRS+DEPMT+FV C CG RWK Sbjct: 180 LSVAETPELVAEAEFVAVGIEVAMAREFKMDSARNTNEGKKHYTDKYRQVSFNLKKNESLRQNLLTHHISGDQLIKMSPDEMATEERRKEMDQLRDDAFQRARLDWAEANADKINKACGIKDTRGLFTCGRCKSTKTSNTQQQTRSADEPMTVFVICHNCGKRWK 344
BLAST of NO25G01070 vs. NCBI_GenBank
Match: XP_008873235.1 (transcription elongation factor S-II [Aphanomyces invadans] >ETV98360.1 transcription elongation factor S-II [Aphanomyces invadans]) HSP 1 Score: 122.5 bits (306), Expect = 2.700e-24 Identity = 63/147 (42.86%), Postives = 83/147 (56.46%), Query Frame = 0 Query: 210 AARVAVDIEQAMQDVADYRNASKQYGDKARSLKYNLDTNEHLRLRVVLGDLRPLTLVGMKPEDMQPEEHRQAAEAAAALAYEANLLDWQDKNADKIRAKLGIEDVGGSFTCGRCKGNKTSYQAKQTRSSDEPMTMFVRCLTCGNRWK 357 A VA+ E M + K Y DK R L +NL N +LRL ++ + L+ M P++M +E R+ + A++ LDW + NADKI GI+D G FTCGRCK KTS +QTRS+DEPMT+FV C CG RWK Sbjct: 186 AIEVAMAREYNMDSARNTNEGKKHYTDKYRQLSFNLKKNVNLRLNLLTNKVTGDQLIKMTPDEMATDERRKEMDQLRDDAFQRARLDWAEANADKINKACGIKDARGLFTCGRCKSTKTSNTQQQTRSADEPMTVFVICHDCGKRWK 332
BLAST of NO25G01070 vs. NCBI_GenBank
Match: OQR94611.1 (transcription elongation factor [Achlya hypogyna]) HSP 1 Score: 122.1 bits (305), Expect = 3.500e-24 Identity = 68/155 (43.87%), Postives = 86/155 (55.48%), Query Frame = 0 Query: 208 SRAARVAVDIEQAMQDV------ADYRNASKQYGDKARSLKYNLDTNEHLRLRVVLGDLRPLTLVGMKPEDMQPEEHRQAAEAAAALAYEANLLDWQDKNADKIRAKLGIEDVGGSFTCGRCKGNKTSYQAKQTRSSDEPMTMFVRCLTCGNRWK 357 S A VAV IE +M + + A K YG K R L +NL NE LR V+ + LV M P+++ +E R + A++++ LDW NADKI + GI D G FTCGRCK TS KQTRS+DEPMT+FV C CG RWK Sbjct: 161 SEAEYVAVAIETSMAKLYGMDKGLETAQAKKDYGSKYRQLSFNLKKNEILRDEVLTQTVSGDVLVNMSPDELATQERRLEKDKFRDDAFQSSRLDWDVANADKINKQCGITDARGLFTCGRCKSTNTSNTQKQTRSADEPMTVFVLCHDCGKRWK 315
BLAST of NO25G01070 vs. NCBI_GenBank
Match: CCI44335.1 (unnamed protein product [Albugo candida]) HSP 1 Score: 121.7 bits (304), Expect = 4.600e-24 Identity = 67/154 (43.51%), Postives = 86/154 (55.84%), Query Frame = 0 Query: 206 DASRAARVAVDIEQAMQ---DVADYRNASKQYGDKARSLKYNLDTNEHLRLRVVLGDLRPLTLVGMKPEDMQPEEHRQAAEAAAALAYEANLLDWQDKNADKIRAKLGIEDVGGSFTCGRCKGNKTSYQAKQTRSSDEPMTMFVRCLTCGNRWK 357 D A VA +IE AM ++ K Y K R L +NL N LR ++ + L+ M PE++ +E R E A++ LDW D N DKI + GIE+ G FTCGRCK +KTS KQTRS+DEPMT+FV+C CGNRWK Sbjct: 154 DTCNAPDVATEIEIAMARMFNIGFPGENKKDYTAKFRQLSFNLKKNARLREDLLQDAVSAEQLINMSPEELATDEKRHEIEKLRDDAFQRARLDWADANEDKINKQCGIENSKGLFTCGRCKSSKTSNTQKQTRSADEPMTVFVQCHNCGNRWK 307
BLAST of NO25G01070 vs. NCBI_GenBank
Match: CCA17716.1 (transcription elongation factor putative [Albugo laibachii Nc14] >CCA18362.1 transcription elongation factor putative [Albugo laibachii Nc14]) HSP 1 Score: 120.2 bits (300), Expect = 1.300e-23 Identity = 77/188 (40.96%), Postives = 99/188 (52.66%), Query Frame = 0 Query: 174 QSEAAALDLPPARLKI-ANLFLALFLKYPEGQEDASRAARVAVDIEQAMQ---DVADYRNASKQYGDKARSLKYNLDTNEHLRLRVVLGDLRPLTLVGMKPEDMQPEEHRQAAEAAAALAYEANLLDWQDKNADKIRAKLGIE-DVGGSFTCGRCKGNKTSYQAKQTRSSDEPMTMFVRCLTCGNRWK 357 +S ++A LPP K+ A + + D S A VA IE AM V K Y K R L +NL N LR ++L + L+ M PE++ +E R E A++ LDW D N DKI + GIE + G FTCGRCK +KTS KQTRS+DEPMT+FV+C CGNRWK Sbjct: 121 KSSSSASFLPPGLDKMRATVRTKMKENLELADADTSNAPDVATAIEIAMARMFSVGFPGENKKDYTAKFRQLSFNLKKNARLREDLLLDVVSAEQLINMSPEELATDEKRHEIEKLRDDAFQRARLDWADANEDKINKQCGIEKNSKGLFTCGRCKSSKTSNTQKQTRSADEPMTVFVQCHNCGNRWK 308
BLAST of NO25G01070 vs. NCBI_GenBank
Match: GBG34013.1 (Transcription elongation factor A protein 1 [Aurantiochytrium sp. FCC1311]) HSP 1 Score: 119.4 bits (298), Expect = 2.300e-23 Identity = 68/177 (38.42%), Postives = 99/177 (55.93%), Query Frame = 0 Query: 183 PPA---RLKIANLFLALFLKYPEGQEDASRAARVAVDIEQAMQDVADYRNASKQYGDKARSLKYNLDTNEHLRLRVVLGDLRPLTLVGMKPEDMQPEEHRQAAEAAAALAYEANLLDWQDKNADKIRAKLGIEDVGGSFTCGRCKGNKTSYQAKQTRSSDEPMTMFVRCLTCGNRWK 357 PPA R KI +L +F K E +A AV +E +M +V + +++ Y R+LK NL LR ++ G L LV M PE M P+E ++ + ++A+ DW DKN ++I G++ GG +TC RC KT++ KQTRS+DEPMT+FV CL+CG RW+ Sbjct: 141 PPADSKRKKICDLIAKIF-KEDEAVYGEDKARLAAVHVESSMCEV--HGASTEPYKSMYRTLKANLGRFPQLRHDIIEGRLPTNELVRMSPEQMLPKEKKEEKDKEMQEVFQASQQDWLDKNREEIMKAAGVDVNGGLYTCSRCNSKKTTHYQKQTRSADEPMTVFVSCLSCGKRWR 314 The following BLAST results are available for this feature:
BLAST of NO25G01070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO25G01070 ID=NO25G01070|Name=NO25G01070|organism=Nannochloropsis oceanica|type=gene|length=1074bpback to top protein sequence of NO25G01070.1 >NO25G01070.1-protein ID=NO25G01070.1-protein|Name=NO25G01070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=358bpback to top Synonyms
Publications
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