NO25G01070, NO25G01070 (gene) Nannochloropsis oceanica

Overview
NameNO25G01070
Unique NameNO25G01070
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1074
Alignment locationchr25:296286..297359 +

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Properties
Property NameValue
DescriptionTranscription elongation factor
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:296286..297359 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
GO:0009987cellular process
GO:0009058biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035441TFIIS/LEDGF_dom_sf
IPR036575TFIIS_cen_dom_sf
IPR017923TFIIS_N
IPR003618TFIIS_cen_dom
IPR001222Znf_TFIIS
Homology
BLAST of NO25G01070 vs. NCBI_GenBank
Match: EWM21621.1 (transcription elongation factor [Nannochloropsis gaditana])

HSP 1 Score: 405.2 bits (1040), Expect = 2.100e-109
Identity = 241/361 (66.76%), Postives = 267/361 (73.96%), Query Frame = 0
Query:    3 SSKLTDLVTDLAVKLEKVCDPSHLDAARAQDLLGDLEEIDMTVDLLKLSKAGFAVKKCKAVKAEAGIFDAVNERAGLLLKKWKKVVASPA----GIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYLAQSEAAALD--LPPARLKIANLFLALFLKYPEGQEDASRAARVAVDIEQAMQDVADYRNASKQYGDKARSLKYNLDTNEHLRLRVVLGDLRPLTLVGMKPEDMQPEEHRQAAEAAAALAYEANLLDWQDKNADKIRAKLGIEDVGGSFTCGRCKGNKTSYQAKQTRSSDEPMTMFVRCLTCGNRWKE 358
            S+KLT+LVTDLAVKLEK C+P+ LDAA A D+LG+LE IDMTVD+LK SKAGFAVKKCKAVKA+ G F +V ERA LL KKWK+ VA+P+    G                                                         XXXXXXXXXXXXXXXXX  S+LA +EAA L+  LPP+RLKIANLFLALFLKYPEGQED  RAARVAVDIEQAMQ+V D++ A+KQYGDKARSLKYNL  NEHLR+RV+L D+ P  LV MK ++MQPEEHRQAAEAAAALAYEANLLDW DKNADKIR +LGIEDVGGSFTCGRCKGNKTSYQAKQTRSSDEPMTMFVRCLTCGNRWKE
Sbjct:    8 SNKLTELVTDLAVKLEKACEPARLDAALAGDVLGELETIDMTVDILKKSKAGFAVKKCKAVKAD-GAFASVCERASLLFKKWKRAVATPSDPTRGGEKATNGRPSESLSTASVNSGPATSISPLTCGGSQGKARNGEPVVEGNAPPPSSGPSXXXXXXXXXXXXXXXXXVLSHLASAEAAILEDSLPPSRLKIANLFLALFLKYPEGQEDPGRAARVAVDIEQAMQNVMDHKLAAKQYGDKARSLKYNLGMNEHLRMRVILSDVAPAVLVAMKADEMQPEEHRQAAEAAAALAYEANLLDWHDKNADKIRKQLGIEDVGGSFTCGRCKGNKTSYQAKQTRSSDEPMTMFVRCLTCGNRWKE 367          
BLAST of NO25G01070 vs. NCBI_GenBank
Match: CBJ32824.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 139.0 bits (349), Expect = 2.800e-29
Identity = 78/187 (41.71%), Postives = 101/187 (54.01%), Query Frame = 0
Query:  170 SYLAQSEAAALDLPPARLKIANLFLALFLKYPEGQEDASRAARVAVDIEQAMQDVADYRNASKQYGDKARSLKYNLDTNEHLRLRVVLGDLRPLTLVGMKPEDMQPEEHRQAAEAAAALAYEANLLDWQDKNADKIRAKLGIEDVGGSFTCGRCKGNKTSYQAKQTRSSDEPMTMFVRCLTCGNRWK 357
            S L+  E A L L   R     L L         +++    ARVA  +E AM +   Y +    Y DKAR L +NL  N+ LR  V  G + P  LV M   ++  ++ R+A + A +   EA +LDW DKN DKI  + GI++  G F CGRCK  KT+Y  KQTRS+DEPMT FV C  C NRWK
Sbjct:  189 SILSDDEPAPLRLKMRRKMFDTLLLG------SSEDERIPTARVAKGVECAMNENNPYLSKKASYLDKARQLVFNLKKNDQLRQDVREGLVEPQRLVAMTSTELMAKDKREAMDKAVSERTEARMLDWYDKNEDKINKQCGIKETDGMFECGRCKSTKTTYTQKQTRSADEPMTTFVTCSNCKNRWK 369          
BLAST of NO25G01070 vs. NCBI_GenBank
Match: GAX13721.1 (transcription elongation factor S-II [Fistulifera solaris])

HSP 1 Score: 128.3 bits (321), Expect = 4.900e-26
Identity = 77/186 (41.40%), Postives = 97/186 (52.15%), Query Frame = 0
Query:  181 DLPPARLKIANLFLALFLKYPEGQEDASRA-------ARVAVDIEQAMQDVADYRNASKQYGDKARSLKYNLDTNEHLRLRVVLGDLRPLTLVGMKPEDMQPEEHRQAAEAAAALAYEANLLDWQDKNADKIRAKLGIED---VGGSFTCGRCKGNKTSYQAKQTRSSDEPMTMFVRCLTCGNRWK 357
            DLPP R  I      L L+  +   D   A       A  AVD+E A+ D  D     K Y DKARS+ +NL  N+ L + ++ G   P  LV M PE +   + RQA E  A    ++  LDW+  N  KI    GI+        FTCGRCK  KT+   KQTRS+DEPMT+FV C+ CGNRWK
Sbjct:  126 DLPPNRQSICQKLFEL-LELAKSHLDGMSAEAMQEALAHTAVDVEAAIHDNND--KDRKAYSDKARSIAFNLKKNQQLAVDLIFGSTSPDELVHMSPEQLASADQRQAREEQAKKLTDSRRLDWEVANEAKINEMCGIKGDLLKASLFTCGRCKSTKTTSTQKQTRSADEPMTVFVLCMNCGNRWK 308          
BLAST of NO25G01070 vs. NCBI_GenBank
Match: GAX11069.1 (transcription elongation factor S-II [Fistulifera solaris])

HSP 1 Score: 126.7 bits (317), Expect = 1.400e-25
Identity = 78/185 (42.16%), Postives = 97/185 (52.43%), Query Frame = 0
Query:  181 DLPPARLKIA-NLFLALFLKYPEGQEDASRA-----ARVAVDIEQAMQDVADYRNASKQYGDKARSLKYNLDTNEHLRLRVVLGDLRPLTLVGMKPEDMQPEEHRQAAEAAAALAYEANLLDWQDKNADKIRAKLGIED---VGGSFTCGRCKGNKTSYQAKQTRSSDEPMTMFVRCLTCGNRWK 357
            DLPP R  I   LF  L L      E +  A     A  AVD+E A+ D  D     K Y DKARS+ +NL  N+ L + ++ G   P  L  M PE +   + RQA E  A    ++  LDW+  N  KI    GI+        FTCGRCK  KT+   KQTRS+DEPMT+FV C+ CGNRWK
Sbjct:  126 DLPPHRQSICQKLFELLELAKSHLDEMSVEAIREAIAHTAVDVEAAIHDNND--KDRKAYSDKARSIAFNLKKNQQLAVDLIFGSTSPDELAHMSPEQLASADQRQAREEQAKKLTDSRRLDWEVANEAKINEMCGIKGDLLKASLFTCGRCKSTKTTSTQKQTRSADEPMTVFVLCMNCGNRWK 308          
BLAST of NO25G01070 vs. NCBI_GenBank
Match: XP_009837729.1 (transcription elongation factor S-II [Aphanomyces astaci] >ETV72943.1 transcription elongation factor S-II [Aphanomyces astaci])

HSP 1 Score: 123.6 bits (309), Expect = 1.200e-24
Identity = 69/165 (41.82%), Postives = 88/165 (53.33%), Query Frame = 0
Query:  198 LKYPEGQEDASRAARVAVDIEQA------MQDVADYRNASKQYGDKARSLKYNLDTNEHLRLRVVLGDLRPLTLVGMKPEDMQPEEHRQAAEAAAALAYEANLLDWQDKNADKIRAKLGIEDVGGSFTCGRCKGNKTSYQAKQTRSSDEPMTMFVRCLTCGNRWK 357
            L   E  E  + A  VAV IE A      M    +     K Y DK R + +NL  NE LR  ++   +    L+ M P++M  EE R+  +     A++   LDW + NADKI    GI+D  G FTCGRCK  KTS   +QTRS+DEPMT+FV C  CG RWK
Sbjct:  180 LSVAETPELVAEAEFVAVGIEVAMAREFKMDSARNTNEGKKHYTDKYRQVSFNLKKNESLRQNLLTHHISGDQLIKMSPDEMATEERRKEMDQLRDDAFQRARLDWAEANADKINKACGIKDTRGLFTCGRCKSTKTSNTQQQTRSADEPMTVFVICHNCGKRWK 344          
BLAST of NO25G01070 vs. NCBI_GenBank
Match: XP_008873235.1 (transcription elongation factor S-II [Aphanomyces invadans] >ETV98360.1 transcription elongation factor S-II [Aphanomyces invadans])

HSP 1 Score: 122.5 bits (306), Expect = 2.700e-24
Identity = 63/147 (42.86%), Postives = 83/147 (56.46%), Query Frame = 0
Query:  210 AARVAVDIEQAMQDVADYRNASKQYGDKARSLKYNLDTNEHLRLRVVLGDLRPLTLVGMKPEDMQPEEHRQAAEAAAALAYEANLLDWQDKNADKIRAKLGIEDVGGSFTCGRCKGNKTSYQAKQTRSSDEPMTMFVRCLTCGNRWK 357
            A  VA+  E  M    +     K Y DK R L +NL  N +LRL ++   +    L+ M P++M  +E R+  +     A++   LDW + NADKI    GI+D  G FTCGRCK  KTS   +QTRS+DEPMT+FV C  CG RWK
Sbjct:  186 AIEVAMAREYNMDSARNTNEGKKHYTDKYRQLSFNLKKNVNLRLNLLTNKVTGDQLIKMTPDEMATDERRKEMDQLRDDAFQRARLDWAEANADKINKACGIKDARGLFTCGRCKSTKTSNTQQQTRSADEPMTVFVICHDCGKRWK 332          
BLAST of NO25G01070 vs. NCBI_GenBank
Match: OQR94611.1 (transcription elongation factor [Achlya hypogyna])

HSP 1 Score: 122.1 bits (305), Expect = 3.500e-24
Identity = 68/155 (43.87%), Postives = 86/155 (55.48%), Query Frame = 0
Query:  208 SRAARVAVDIEQAMQDV------ADYRNASKQYGDKARSLKYNLDTNEHLRLRVVLGDLRPLTLVGMKPEDMQPEEHRQAAEAAAALAYEANLLDWQDKNADKIRAKLGIEDVGGSFTCGRCKGNKTSYQAKQTRSSDEPMTMFVRCLTCGNRWK 357
            S A  VAV IE +M  +       +   A K YG K R L +NL  NE LR  V+   +    LV M P+++  +E R   +     A++++ LDW   NADKI  + GI D  G FTCGRCK   TS   KQTRS+DEPMT+FV C  CG RWK
Sbjct:  161 SEAEYVAVAIETSMAKLYGMDKGLETAQAKKDYGSKYRQLSFNLKKNEILRDEVLTQTVSGDVLVNMSPDELATQERRLEKDKFRDDAFQSSRLDWDVANADKINKQCGITDARGLFTCGRCKSTNTSNTQKQTRSADEPMTVFVLCHDCGKRWK 315          
BLAST of NO25G01070 vs. NCBI_GenBank
Match: CCI44335.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 121.7 bits (304), Expect = 4.600e-24
Identity = 67/154 (43.51%), Postives = 86/154 (55.84%), Query Frame = 0
Query:  206 DASRAARVAVDIEQAMQ---DVADYRNASKQYGDKARSLKYNLDTNEHLRLRVVLGDLRPLTLVGMKPEDMQPEEHRQAAEAAAALAYEANLLDWQDKNADKIRAKLGIEDVGGSFTCGRCKGNKTSYQAKQTRSSDEPMTMFVRCLTCGNRWK 357
            D   A  VA +IE AM    ++       K Y  K R L +NL  N  LR  ++   +    L+ M PE++  +E R   E     A++   LDW D N DKI  + GIE+  G FTCGRCK +KTS   KQTRS+DEPMT+FV+C  CGNRWK
Sbjct:  154 DTCNAPDVATEIEIAMARMFNIGFPGENKKDYTAKFRQLSFNLKKNARLREDLLQDAVSAEQLINMSPEELATDEKRHEIEKLRDDAFQRARLDWADANEDKINKQCGIENSKGLFTCGRCKSSKTSNTQKQTRSADEPMTVFVQCHNCGNRWK 307          
BLAST of NO25G01070 vs. NCBI_GenBank
Match: CCA17716.1 (transcription elongation factor putative [Albugo laibachii Nc14] >CCA18362.1 transcription elongation factor putative [Albugo laibachii Nc14])

HSP 1 Score: 120.2 bits (300), Expect = 1.300e-23
Identity = 77/188 (40.96%), Postives = 99/188 (52.66%), Query Frame = 0
Query:  174 QSEAAALDLPPARLKI-ANLFLALFLKYPEGQEDASRAARVAVDIEQAMQ---DVADYRNASKQYGDKARSLKYNLDTNEHLRLRVVLGDLRPLTLVGMKPEDMQPEEHRQAAEAAAALAYEANLLDWQDKNADKIRAKLGIE-DVGGSFTCGRCKGNKTSYQAKQTRSSDEPMTMFVRCLTCGNRWK 357
            +S ++A  LPP   K+ A +   +         D S A  VA  IE AM     V       K Y  K R L +NL  N  LR  ++L  +    L+ M PE++  +E R   E     A++   LDW D N DKI  + GIE +  G FTCGRCK +KTS   KQTRS+DEPMT+FV+C  CGNRWK
Sbjct:  121 KSSSSASFLPPGLDKMRATVRTKMKENLELADADTSNAPDVATAIEIAMARMFSVGFPGENKKDYTAKFRQLSFNLKKNARLREDLLLDVVSAEQLINMSPEELATDEKRHEIEKLRDDAFQRARLDWADANEDKINKQCGIEKNSKGLFTCGRCKSSKTSNTQKQTRSADEPMTVFVQCHNCGNRWK 308          
BLAST of NO25G01070 vs. NCBI_GenBank
Match: GBG34013.1 (Transcription elongation factor A protein 1 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 119.4 bits (298), Expect = 2.300e-23
Identity = 68/177 (38.42%), Postives = 99/177 (55.93%), Query Frame = 0
Query:  183 PPA---RLKIANLFLALFLKYPEGQEDASRAARVAVDIEQAMQDVADYRNASKQYGDKARSLKYNLDTNEHLRLRVVLGDLRPLTLVGMKPEDMQPEEHRQAAEAAAALAYEANLLDWQDKNADKIRAKLGIEDVGGSFTCGRCKGNKTSYQAKQTRSSDEPMTMFVRCLTCGNRWK 357
            PPA   R KI +L   +F K  E      +A   AV +E +M +V  +  +++ Y    R+LK NL     LR  ++ G L    LV M PE M P+E ++  +      ++A+  DW DKN ++I    G++  GG +TC RC   KT++  KQTRS+DEPMT+FV CL+CG RW+
Sbjct:  141 PPADSKRKKICDLIAKIF-KEDEAVYGEDKARLAAVHVESSMCEV--HGASTEPYKSMYRTLKANLGRFPQLRHDIIEGRLPTNELVRMSPEQMLPKEKKEEKDKEMQEVFQASQQDWLDKNREEIMKAAGVDVNGGLYTCSRCNSKKTTHYQKQTRSADEPMTVFVSCLSCGKRWR 314          
The following BLAST results are available for this feature:
BLAST of NO25G01070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21621.12.100e-10966.76transcription elongation factor [Nannochloropsis g... [more]
CBJ32824.12.800e-2941.71conserved unknown protein [Ectocarpus siliculosus][more]
GAX13721.14.900e-2641.40transcription elongation factor S-II [Fistulifera ... [more]
GAX11069.11.400e-2542.16transcription elongation factor S-II [Fistulifera ... [more]
XP_009837729.11.200e-2441.82transcription elongation factor S-II [Aphanomyces ... [more]
XP_008873235.12.700e-2442.86transcription elongation factor S-II [Aphanomyces ... [more]
OQR94611.13.500e-2443.87transcription elongation factor [Achlya hypogyna][more]
CCI44335.14.600e-2443.51unnamed protein product [Albugo candida][more]
CCA17716.11.300e-2340.96transcription elongation factor putative [Albugo l... [more]
GBG34013.12.300e-2338.42Transcription elongation factor A protein 1 [Auran... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL045nonsL045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR043ncniR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004321NSK004321Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G01070.1NO25G01070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603267gene_8592Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100012g30gene8804Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G01070.1NO25G01070.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G01070 ID=NO25G01070|Name=NO25G01070|organism=Nannochloropsis oceanica|type=gene|length=1074bp
ATGTTATCTTCCAAGCTGACTGACCTGGTCACGGACCTGGCCGTCAAACT
GGAGAAAGTCTGCGACCCTTCGCACCTGGATGCAGCTCGAGCGCAAGACT
TACTGGGCGATCTGGAGGAAATCGATATGACCGTCGACCTGCTGAAGCTG
AGCAAGGCCGGGTTTGCCGTCAAGAAGTGCAAGGCGGTCAAGGCGGAGGC
GGGGATTTTCGATGCCGTGAATGAACGGGCGGGGTTGCTGCTGAAGAAGT
GGAAGAAAGTGGTGGCGTCTCCCGCAGGGATAGGGGGAAGGGATGGGGCC
AGCAGTAGCAGCAGCAGCAACAACAATGGGGGAGGTCTCCTCGAGTCACA
TTCCATCGGTTCCGCAGGCAGCGTCGCCGCCGACACTAGCAGCAACGATA
GTGGCACACGGAAGGCCATATCTGGCAGCGCTGTGTCCTCATCCTCTTCT
TCCGCGGCTGCCCCACCAGCATCATCACAACCTCCTGCCGGCCCTCCCAC
AGTCATCTCCTACCTTGCCCAATCCGAAGCAGCTGCTTTGGACTTGCCTC
CAGCCCGTCTCAAGATTGCGAATCTCTTCCTCGCGCTATTCCTCAAGTAC
CCCGAAGGACAAGAAGACGCGTCTCGGGCCGCGCGGGTGGCGGTGGACAT
TGAACAAGCCATGCAAGATGTCGCGGATTACCGAAACGCCAGCAAACAAT
ACGGTGATAAAGCGCGCTCTTTGAAGTATAATTTGGACACTAATGAGCAC
TTGCGCTTGAGGGTGGTGTTGGGTGATTTGCGTCCGTTGACGTTGGTTGG
AATGAAGCCTGAAGACATGCAGCCGGAAGAGCATCGACAAGCTGCCGAAG
CTGCTGCGGCATTGGCGTACGAAGCAAATTTGTTGGATTGGCAGGATAAG
AATGCGGACAAGATTCGTGCAAAACTGGGAATCGAGGATGTTGGGGGTTC
CTTCACTTGTGGGCGATGCAAGGGTAATAAAACGTCTTACCAGGCGAAGC
AGACGCGGTCATCGGACGAGCCCATGACCATGTTTGTACGGTGCTTAACG
TGTGGGAATCGGTGGAAGGAGTAA
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protein sequence of NO25G01070.1

>NO25G01070.1-protein ID=NO25G01070.1-protein|Name=NO25G01070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=358bp
MLSSKLTDLVTDLAVKLEKVCDPSHLDAARAQDLLGDLEEIDMTVDLLKL
SKAGFAVKKCKAVKAEAGIFDAVNERAGLLLKKWKKVVASPAGIGGRDGA
SSSSSSNNNGGGLLESHSIGSAGSVAADTSSNDSGTRKAISGSAVSSSSS
SAAAPPASSQPPAGPPTVISYLAQSEAAALDLPPARLKIANLFLALFLKY
PEGQEDASRAARVAVDIEQAMQDVADYRNASKQYGDKARSLKYNLDTNEH
LRLRVVLGDLRPLTLVGMKPEDMQPEEHRQAAEAAAALAYEANLLDWQDK
NADKIRAKLGIEDVGGSFTCGRCKGNKTSYQAKQTRSSDEPMTMFVRCLT
CGNRWKE*
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Synonyms
Publications