NO25G00890, NO25G00890 (gene) Nannochloropsis oceanica

Overview
NameNO25G00890
Unique NameNO25G00890
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3098
Alignment locationchr25:250173..253270 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:250173..253270 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO25G00890 vs. NCBI_GenBank
Match: EWM21594.1 (hypothetical protein Naga_100012g47 [Nannochloropsis gaditana])

HSP 1 Score: 520.0 bits (1338), Expect = 1.300e-143
Identity = 303/660 (45.91%), Postives = 366/660 (55.45%), Query Frame = 0
Query:   72 PHEQCTIVELHNRKGCLYQPKSILSLDVDNAIPTPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGPPQAYPWRDGYKVTSSEALDLQPLLNSRLTGYGGADVATSFLSPPFKNDGGKHYSLWLLGDTFLGKMIEGANGEKKRVPGYFVHNSVALIPVWEAPGEEADPVEVVFWHGLSSTSSSSENGRKDRGVSPFPSPSLDEGGKEGGREEGGGCPESLFRVAMESARKDENECHEGGEYLWPISGLGVDLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATRWAYLPWIETDVNLTRSVFNFQVLGTTLIVVDNTHLPPPQWSYRLKDLPFTSSSDNWFQAMALAXXXXXXXXXXXXXXXXXXXXXFVARNVEEMVYLMGTTSRLEEGGTEEGKEGEGVPRQILGKVPVKGLLDLSLQGMEVWGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPSTILSPVYTGISLHFHPYLQRWYSISIDWINKIVLLQSSRLITGPWDSTPIYSLPSPFNSSTLMAYSGKAHPELATKDNEIVFTYVVNTPGVVYPLFEEGADVLYVPRFIRLVFE-KEKGKE 731
            P ++CTIVELHNRKGCL++ K+ L  D+D  IPTPSS                                      FGPPQ+  WR G ++T SEA++LQPLL++R  GY GADVA S  +PP   D G+ ++LWLLGDTFLG+M EG    ++R+PGYFVHNSVA +PVW  P  EADP +VVFWHGLS               +PF + +          EE  GCP SLFR   E  R DENECHEGGEYLWP+SGL VDL+                                            ATRWAYLPWIE DVN+TRSV NFQVLGTTL+VVD+ HL PP+W YR +D P T    NWFQA+ALA            XXXXXXXXX +AR+  E+V+LMGT    E+    E   G+G  RQILG+VPVKGLLD++L+GMEVWG                                                                                   V +++LSPVYTG+SL +  +L+RWYS++IDW+ K  LLQ++  ITGPWDSTPIY LP PFN S LMAY+GKAHPELA  +NEIVFTYV NTPGVVYPLFE+GAD+LYVPRF+R+VF+ KE GKE
Sbjct:   69 PQQKCTIVELHNRKGCLFEEKASLPADMDVVIPTPSS-------SGSKTNTSGSPFDVPASRSGEQAPWLGQRAPFGPPQSRTWR-GRRLTVSEAVELQPLLDARPLGYNGADVAASLPAPPMAGDKGQPHTLWLLGDTFLGRM-EG----RRRIPGYFVHNSVATMPVWNHPSREADPAQVVFWHGLSPP-------------APFAATA---------EEEKDGCPASLFRTPGERVRGDENECHEGGEYLWPVSGLAVDLA-------------------------AAPSNASASRSFASHLLLLATRWAYLPWIEEDVNMTRSVLNFQVLGTTLVVVDDAHLEPPRWRYRTRDWPGTGPDVNWFQAIALA--------GEEEXXXXXXXXXXLARSENELVFLMGTAP--EDSAVAEKGGGKGSTRQILGRVPVKGLLDMTLEGMEVWG-------------RGKAAPAKARAAAQVGATGAKAGDKAGLGRVFLPPAASGAIPSALTGNDGSRSDASEGWGTLSSYMDGSWVATSLLSPVYTGVSLQYSSFLRRWYSVAIDWLGKQALLQTAESITGPWDSTPIYDLPPPFNDSNLMAYTGKAHPELADNENEIVFTYVANTPGVVYPLFEDGADILYVPRFVRIVFDGKEGGKE 645          
BLAST of NO25G00890 vs. NCBI_GenBank
Match: EWM25898.1 (hypothetical protein Naga_100048g28 [Nannochloropsis gaditana])

HSP 1 Score: 198.0 bits (502), Expect = 1.100e-46
Identity = 165/621 (26.57%), Postives = 237/621 (38.16%), Query Frame = 0
Query:  155 WRDGYKVTSSEALDLQPLLNSRLTGYGGADVATSFLSPPF-----------------------------KNDG-------GKHYSLWLLGDTFLGKMIEGANGEKKRVPGYFVHNSVALIPVWEAPGEEADPV---EVVFWHGLSSTSSSSENGRKDRGVSPFPSPSLDEGGKEGGREEGGGCPESLFRVAMESARKDENECHEGGEYLWPISGLGVDLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATRWAYLPWIETDVNL-TRSVFNFQVLGTTLIVVDNTHLPPPQWSYRLKDLPFTSSSDNWFQAMALAXXXXXXXXXXXXXXXXXXXXXFVARNVEEMVYLMGTTSRLEEGGTEEGKEGEGVPRQ-----ILGKVPVKGLLDLSLQGMEVWGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPSTILSPVYTGISLHFHPYLQRWYSISIDWINKIVLLQSSRLITGPWDSTPIYSLPSPFNS-STLMAYSGKAHPELATKDNEIVFTYVVNTPGVVYPLFEEGADVLYVPRFIRLVFEKEKGK 730
            WR G ++ ++EA DLQPL + R  G+ GADVATSF  PP                              K +G       GK+  +WL GDT LG     AN +++    +F+HNSVA +PV       A P+   +VVF   +S                                   GGCP S+F          ++EC    +YLWPISG+GV                                               A RWAY+      V+L   + FNF +LGTT++VVDN H  P QW YR +DLP T ++ NW+ AM                         +A   E+M+YL G  +           E  G P Q      L ++PV+ L+DLS + MEVW                                                                                      + ++ PV++  S+ +   L  +Y + +DW++  V+L  +  +T  W+   +Y +P PFN  +  M Y+GKAHPEL+ +D E++ T++ N PG + PLFE GA  +YVPRF+RL  E+   K
Sbjct:  546 WR-GIEIIATEAEDLQPLFSVRNAGWLGADVATSFRFPPRHPTGLRTSGVATSTSDATQGPGDGRTEGPKKEGDVGEAEHGKY--MWLFGDTLLGY----ANEDRRLSGAFFLHNSVAFLPVINVSDPRAKPLGPEDVVFAWNVSK----------------------------------GGCPVSIF----VRGPPQDDECVHTQDYLWPISGIGVS-----YLEPRAEKKGNVNGKRGRGDSGSEFDSSTAEGDVVSKVIVLAVRWAYVKSHTASVDLFDDNAFNFNILGTTVLVVDNPHAHPTQWEYRQRDLPGTDANLNWYSAMMHGDKDAE-----------------LATGPEDMIYLFGVNN----------TEAVGTPPQQWQYETLSRLPVRSLVDLSFRDMEVWA-----------------------------------------------LTKGSPDEKAQATTDTDTRLTNTTWAPYPLFLHRHLKAAPLVFPVFSETSVRYSHSLGAYYGVVVDWLSSNVVLYLAEDLTEAWEPVVVYKIPPPFNDPAVYMTYAGKAHPELSRED-ELILTFMTNAPGDLEPLFETGAKDVYVPRFLRLKLERPAPK 1041          
BLAST of NO25G00890 vs. NCBI_GenBank
Match: EWM29268.1 (glycolipid 2-alpha-mannosyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 129.4 bits (324), Expect = 4.800e-26
Identity = 137/581 (23.58%), Postives = 209/581 (35.97%), Query Frame = 0
Query:  155 WRDGYKVTSSEALDLQPLLNSRLTGYGGADVATSFLSPPFKNDGGKHYSLWLLGDTFLGKMIEGANGEKKRVPGYFVHNSVALIPVWE---APGEEADPVEVVFWHGLSSTSSSSENGRKDRGVSPFPSPSLDEGGKEGGREEGGGCPESLFRVAMESARKDENECHEGGEYLWPISGLGVDLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATRWAYLPWIETDVNLTRSV-----FNFQVLGTTLIVVDNTHLPPPQWSYRLKDLPFTSSSDNWFQAMALAXXXXXXXXXXXXXXXXXXXXXFVARNVEEMVYLMGTTSRLEEGGTEEGKEGEGVPRQILGKVPVKGLLDLSLQGMEVWGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPSTILSPVYTGISLHFHPYLQRWYSISIDWINKIVLLQSSRLITGPWDSTPIYSLPSPFNSSTL-MAYSGKAHPELATK-----DNEIVFTYVVNTPGVVYPLFEEGADVLYVPRFIRL 722
            WRD   ++   A +L  LL  R  GY G+DVATSF  P     G     +WLLGDT+LG     ++G K++     + N+VA  P      A GE   P +V F+ G     S +         +PF +        E G+                            G  LWP+SG+ V+                                                   +   ++   NLT  +      NF+V GT+LIV++N    P +W Y + D+  T+ + NWF A+A+A                      +A + E+++YL+G       G    G   +   + +LG++ V  LL      MEV                                                                                         I+SP     SL ++  L  W S+++D ++  ++L S+R ++GPW S  I+S+P+P++  +L   Y+GK HPELA +     D E VF+YV N P     LF+EG   LY P+FIR+
Sbjct:  905 WRD-RDISVEPAPELSGLLAPRRFGYLGSDVATSFRLPSVAGHGS---YMWLLGDTYLGT----SDGLKRQGMHTTISNAVAFFPSGADLGAAGELLTPSDVTFFWGYDLDGSPT---------APFEA--------EAGQ--------------------------AAGTVLWPVSGVSVEYQGVVKIV------------------------------------------LFAQRVQKTHNLTDFLGVADGMNFEVEGTSLIVIENPAAAPNRWRYSVTDIAGTNGTHNWFSAVAVAGGKE------------------IADSPEDVLYLVGNV-----GARGLGVYDDEASKNVLGRIKVTDLLKRRFDRMEVLVEEAHESRESDGKELWMSTAEAEASVARRR--------------------------------------------------------KGIISPANAETSLQYNSELGAWVSLAVDSVSAQLVLWSARSVSGPWTSAVIHSIPAPYDDLSLYRCYAGKGHPELAREGLPGGDVEFVFSYVCNAPSDSGILFDEGQLTLYAPQFIRV 1313          
The following BLAST results are available for this feature:
BLAST of NO25G00890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM21594.11.300e-14345.91hypothetical protein Naga_100012g47 [Nannochlorops... [more]
EWM25898.11.100e-4626.57hypothetical protein Naga_100048g28 [Nannochlorops... [more]
EWM29268.14.800e-2623.58glycolipid 2-alpha-mannosyltransferase [Nannochlor... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL045nonsL045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR043ncniR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G00890.1NO25G00890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|209060gene_8576Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100012g47gene8820Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G00890.1NO25G00890.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G00890 ID=NO25G00890|Name=NO25G00890|organism=Nannochloropsis oceanica|type=gene|length=3098bp
ACAGGCTGGAAGCATTTCCCTTCGTCCAAGGAGACACACGGCCCACTGGA
TACGGACGCCGGGGCCCGACATCGGGAACTGCCGGGCAACAATAATGGTG
TTATTAACGCGCCGAGTCATCTTAGGGACAACCTGTGTCGCTATCTTGCT
CAGAACCCTGCGTTCCGTTGAGGTAGACAGCTTTCGGGGGGATTGGGACA
AGCCTCAGCCAGAGGCGATGATCCTGCACgtacgtatcaagcttgagcat
gagtgtgatccgagtgactgatacatcaaccctcctttctcatggtcgag
aaccacgattcttttcctgagctatggctataaaaagatgtatcgtctat
tttgcctgtgttagtgtcatacttggcttctaaaagacgccacattggag
cccctctcctcccctccctgattctaccctccacgctactcagaagccag
tcctcgcctcgcaacctcaagagaagcaccacgataggccattcgttaaa
cctcatcattcttccctctcttcatcaccttttcacttcagAAAATTGAA
ACCTTGGCAGCCGATCCCCTCCCTTCCTTCCTTGGTCCCTCCCCCCCGCC
TTCAGTCCCGCCCCGGGGCCCTCACGAACAATGCACCATCGTCGAGCTCC
ACAATCGCAAAGGCTGCCTCTATCAACCCAAATCCATTTTATCACTGGAC
GTTGACAACGCAATCCCAACGCCTAGCAGCAGCATCACCAGCACCACGAA
TGGAAGCAGCCGCAGTACATCTCCCACTCACCCAGGTGGAGTCCACCACG
GGTCTCCACACCACCACCACCATCACCGTCAGCAGCAGCAGCCGTTCGGC
CCCCCTCAAGCCTACCCCTGGCGTGATGGTTACAAAGTCACCTCTTCCGA
AGCCCTAGACCTACAGCCTTTGTTAAACAGTCGCTTAACCGGGTATGGTG
GCGCCGACGTGGCCACCTCCTTCCTGTCCCCCCCCTTCAAAAACGACGGA
GGCAAGCACTACTCCCTCTGGCTGCTCGGCGACACGTTCCTGGGCAAGAT
GATAGAAGGGGCAAACGGAGAAAAAAAAAGAGTGCCGGGCTATTTCGTGC
ATAACTCGGTGGCGCTCATCCCCGTGTGGGAGGCACCAGGGGAGGAGGCA
GATCCTGTAGAGGTCGTGTTTTGGCACGGCCTTTCCTCCACTTCTTCCTC
CTCTGAGAACGGAAGGAAAGACAGGGGCGTGTCTCCTTTTCCCTCTCCTT
CCTTAGACGAGGGCGGGAAGGAGGGAGGGAGGGAGGAAGGGGGTGGATGC
CCGGAGTCCCTGTTTCGTGTGGCAATGGAGAGTGCGAGGAAGGACGAGAA
TGAGTGTCATGAGGGGGGGGAATACCTCTGGCCTATATCTGGCTTGGGTG
TCGATCTATCTTCCAGCAGCAGCAGCAGCAACAGCGTCAGCAGTAACAGT
AGTAGCAGCAGCAGCAGTATCGGAGGTAGTAGTAATAGCAGCGGGAGCAA
CTACAACAACAACAATGACTACGCATCTTCCCTGATACTCCTCGCCACCC
GCTGGGCCTACCTCCCTTGGATTGAAACGGACGTGAACCTTACACGCAGC
GTGTTTAATTTCCAGGTGCTGGGGACAACGTTAATAGTGGTGGACAACAC
ACATCTTCCCCCACCTCAGTGGAGCTATCGTTTGAAAGACCTCCCCTTCA
CCTCCTCGAGCGACAACTGGTTCCAGGCCATGGCCCTCGCCAGGGAGGAG
GAGGAGCAGGAAGGGGAGCAGGGGGGAGGAAGCGATGGAAGGAGGAGGAG
AGGATTTGTGGCACGCAACGTGGAGGAAATGGTGTATTTGATGGGCACGA
CGTCTAGGTTGGAGGAGGGAGGGACGGAGGAAGGGAAGGAGGGAGAGGGA
GTGCCGAGGCAGATTCTGGGAAAAGTTCCCGTGAAAGGGCTTTTGGATTT
GAGCTTGCAGGGGATGGAGGTGTGGGGGAGTAACAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGTAGAAGTGAAAGTGATGGAGCTACAGCAGCAACA
AGAGCAGCCGTAGCTGTGCCAGCAGCAGATGGAGGAGCAGCCGCATCGGT
TCCGTCAACAATCTCCGAGAACGACAGTGTCCCACCACCCTCTTCCACCT
CCTCCTCCACATTATTCTGGGCCCCCCTTTCCCTCTATGTCAGTTCATCG
TCGTCATCGTCGTCCTCCTCCACTTTTGTCCCCTCCACCATCCTCTCTCC
CGTCTACACTGGTATCTCCCTCCATTTCCATCCCTACCTCCAACGGTGGT
ACTCCATCTCCATCGACTGGATCAACAAAATCGTACTCTTACAATCTTCC
CGTCTCATCACGGGGCCCTGGGACAGCACCCCCATCTATTCCCTCCCTTC
CCCCTTCAACAGCTCAACCCTCATGGCGTACTCGGGCAAGGCCCATCCAG
AGCTTGCTACGAAGGATAATGAAATTGTTTTCACCTACGTCGTGAACACG
CCTGGGGTAGTGTACCCACTGTTTGAAGAAGGGGCGGATGTGCTCTATGT
GCCTCGATTTATACGACTGGTGTTCGAGAAAGAGAAGGGGAAAGAGGGGG
AGGGAGGAAAGGGGGGAGGAAAGCGGGGTTTACGGAATGGGAAATTGATG
ATTGAGGGAGAGGAGGGAGAGGGAGATGAGTCATCTTTGATTGAAGTGGC
TGAGGGAGGGAGCCTTTTGAGAAAGAGTTGGTAGGTGGTGAGGGATAAGG
AGGAGGAGGAGAAGGAGGATACGGAAGAGGAGATAAAACGCATGAGAAGA
AAGACTCGAGAGAAGGGTTTGCGCTGATTGTAGGATACGTATGGCAAAGC
AAGCATGCAGGCAGTAGGGCTCCGAAGAAGCTCTTTTAGAAATACGAAAT
CGGAGGTCTGTGCTACGAAGAGTGACAGAAGCTGTCTCTAGAGGTATGCA
ATCGCCATTGTGAATATCGTCTGAGGTGAAAGAAGCGGCCGGCTGCAGCG
CCTGTGTGTGCGTGTCACACTGACTGGTTGGCTTGAGAGGGAATATCGAG
AAAAAATAATGTATTATAAAAGTAATAAAAGTACCCAGCTACAAGAGA
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protein sequence of NO25G00890.1

>NO25G00890.1-protein ID=NO25G00890.1-protein|Name=NO25G00890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=776bp
MVLLTRRVILGTTCVAILLRTLRSVEVDSFRGDWDKPQPEAMILHKIETL
AADPLPSFLGPSPPPSVPPRGPHEQCTIVELHNRKGCLYQPKSILSLDVD
NAIPTPSSSITSTTNGSSRSTSPTHPGGVHHGSPHHHHHHRQQQQPFGPP
QAYPWRDGYKVTSSEALDLQPLLNSRLTGYGGADVATSFLSPPFKNDGGK
HYSLWLLGDTFLGKMIEGANGEKKRVPGYFVHNSVALIPVWEAPGEEADP
VEVVFWHGLSSTSSSSENGRKDRGVSPFPSPSLDEGGKEGGREEGGGCPE
SLFRVAMESARKDENECHEGGEYLWPISGLGVDLSSSSSSSNSVSSNSSS
SSSSIGGSSNSSGSNYNNNNDYASSLILLATRWAYLPWIETDVNLTRSVF
NFQVLGTTLIVVDNTHLPPPQWSYRLKDLPFTSSSDNWFQAMALAREEEE
QEGEQGGGSDGRRRRGFVARNVEEMVYLMGTTSRLEEGGTEEGKEGEGVP
RQILGKVPVKGLLDLSLQGMEVWGSNSSSSSSSSSSSRSESDGATAATRA
AVAVPAADGGAAASVPSTISENDSVPPPSSTSSSTLFWAPLSLYVSSSSS
SSSSSTFVPSTILSPVYTGISLHFHPYLQRWYSISIDWINKIVLLQSSRL
ITGPWDSTPIYSLPSPFNSSTLMAYSGKAHPELATKDNEIVFTYVVNTPG
VVYPLFEEGADVLYVPRFIRLVFEKEKGKEGEGGKGGGKRGLRNGKLMIE
GEEGEGDESSLIEVAEGGSLLRKSW*
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Synonyms
Publications