NO25G00820, NO25G00820 (gene) Nannochloropsis oceanica

Overview
NameNO25G00820
Unique NameNO25G00820
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3778
Alignment locationchr25:223834..227611 -

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Properties
Property NameValue
DescriptionCcr4-not transcription complex subunit
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:223834..227611 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR001841Znf_RING
IPR000504RRM_dom
IPR003954RRM_dom_euk
Homology
BLAST of NO25G00820 vs. NCBI_GenBank
Match: EWM21601.1 (ccr4-not transcription complex subunit [Nannochloropsis gaditana])

HSP 1 Score: 416.4 bits (1069), Expect = 2.300e-112
Identity = 273/404 (67.57%), Postives = 291/404 (72.03%), Query Frame = 0
Query:    1 MSMSQSDXXXXXEHCPLCCETLDITDRNFFPCPCEYQICCYCWNHIKENLNRLCPACRTPYADDPHNFSPVDLDEIMKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYPHKAATAAGYGGQPSG-----ISPTTGL--PIHS-----------------------TTTTLRNIRVVQRNLAYVLGLPPSLASEETLRKGEYFGQYGKIVKVAVTRPAALGGSGATSAGCCAYVTFAHKEDARACIQALDNFVLPPSLAPADSSSRPIRASFGTTKYCNTFLRYVPCNNPECLFLHEAEDDSEGWTREEAQAWQVIMPGSTPGTHVLVGQGGPSGTGKRVAHPVFPPPRWEEPLSDPSTGGAGGAXXXXXTAAGTTKPKPHLTRPPANPWQQ 375
            MS+SQSD  XXXEHCPLCCETLDITDRNFFPCPCEYQICCYCWNHIKENLN+LCPACRTPY DDPH FSPVD DEI+KKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                       +SP+ GL  P+H                          +TLRNIRVVQRNLAYVLGLP SLASEETLR+ EYFGQYGKIVKVAVTRPA    +     GC AYVTFAHKEDARACIQALDNFVLP S    + + RPIRASFGTTKYCNTFLR+VPCNNPECLFLHE EDDSEGWTRE+A AWQ  MPGSTPG  V+VGQGGPSGTG+RVA P+F P                  XXXXX      + +P   RPPANPW Q
Sbjct:    1 MSLSQSDEEXXXEHCPLCCETLDITDRNFFPCPCEYQICCYCWNHIKENLNKLCPACRTPYGDDPHIFSPVDKDEIIKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYLLSPSNGLSHPLHHPLSMALXXXXXXXXXXXXXXHVVDRSTLRNIRVVQRNLAYVLGLPASLASEETLRRPEYFGQYGKIVKVAVTRPAVPPAASGV-PGCSAYVTFAHKEDARACIQALDNFVLPVS-EGGNGAGRPIRASFGTTKYCNTFLRHVPCNNPECLFLHEVEDDSEGWTREDAIAWQTRMPGSTPGAQVMVGQGGPSGTGRRVAAPIF-PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQRPGAARPPANPWNQ 401          
BLAST of NO25G00820 vs. NCBI_GenBank
Match: GAX23216.1 (CCR4-NOT transcription complex subunit 4 [Fistulifera solaris])

HSP 1 Score: 251.5 bits (641), Expect = 9.900e-63
Identity = 147/381 (38.58%), Postives = 195/381 (51.18%), Query Frame = 0
Query:   15 CPLCCETLDITDRNFFPCPCEYQICCYCWNHIKENLNRLCPACRTPYADDPHNFSPVDLDEIMKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYPHKAATAAGYGGQPSGISPTTG----LPIHSTTTTLRNIRVVQRNLAYVLGLPPSLASEETLRKGEYFGQYGKIVKVAVTRPAALGGSGATSAGCCAYVTFAHKEDARACIQALDNFVLPPSLAPADSSSRPIRASFGTTKYCNTFLRYVPCNNPECLFLHEAEDDSEGWTREEAQAWQVIMPGSTPGTHVL-----------------------VGQGGPSGTGKRVAHPVFPPPRWEEP------LSDPSTGGAGGAXXXXXTAAGTTKPKP 363
            CPLCCE LD++DR F+PC C YQ+C +CW+ I+E+ + LCPACRTPY +DPH FS VD+++++K                                         +      +A+ + G P+ I    G    + +    + L N+RV++RNL Y +GLP S+ASE+ LRK EYFGQYGKI K+ + R  A+ G     A   AYVTF HKED  ACI ALD F L          +R IRAS+GT+KYC+ F++ V CNNPEC +LHE     + +T++E QA  V     T G  VL                       VG GGPSGTG+  + PVFPPP ++E       L  P +GG   A       AGT    P
Sbjct:    8 CPLCCEELDLSDREFYPCKCGYQVCMWCWHRIRESESGLCPACRTPYGEDPHQFSAVDVEDVLK----------------------------ANKARDAALKRQKQQEGGMLSASQHDGVPNSIVTEDGSNVAMEVPKDRSQLANMRVIRRNLVYAVGLPASIASEDVLRKPEYFGQYGKIAKIVINR--AISGEPGRRASASAYVTFVHKEDTLACILALDGFYL---------DNRNIRASYGTSKYCSAFIKSVRCNNPECTYLHEMGAAEDTFTKQEIQAGYV-----TSGRDVLARQQQIVSEQLRLNATSAVPRKRVGGGGPSGTGRASSSPVFPPPEFDEAPKPNPVLLPPPSGGVARA-----ATAGTFSLNP 339          
BLAST of NO25G00820 vs. NCBI_GenBank
Match: GAX10407.1 (CCR4-NOT transcription complex subunit 4 [Fistulifera solaris])

HSP 1 Score: 230.3 bits (586), Expect = 2.400e-56
Identity = 121/302 (40.07%), Postives = 166/302 (54.97%), Query Frame = 0
Query:   15 CPLCCETLDITDRNFFPCPCEYQICCYCWNHIKENLNRLCPACRTPYADDPHNFSPVDLDEIMKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYPHKAATAAGYGGQPSGIS----PTTGLPIHSTTTTLRNIRVVQRNLAYVLGLPPSLASEETLRKGEYFGQYGKIVKVAVTRPAALGGSGATSAGCCAYVTFAHKEDARACIQALDNFVLPPSLAPADSSSRPIRASFGTTKYCNTFLRYVPCNNPECLFLHEAEDDSEGWTREEAQAWQVIMPGSTPGTHVLVGQ 313
            CPLCCE LD++DR F+PC C YQ+C +CW+ I+E+ + LCPACRTPY +DPH FS VD+++++K                                         +      +A+ + G P+ ++        + +    + L N+RV++RNL Y +GLP S+ASE+ LRK EYFGQYGKI K+ + R  A+ G     A   AYVTF HKED  ACI ALD F L          +R IRAS+GT+KYC+ F++ V CNNPEC +LHE     + +T++E QA  V     T G  VL  Q
Sbjct:    8 CPLCCEELDLSDREFYPCKCGYQVCMWCWHRIRESESGLCPACRTPYGEDPHQFSAVDVEDVLK----------------------------ANKARDAALKRQKQQEGGMLSASQHEGLPNSVANEDVSNVTMEVPKDRSQLANMRVIRRNLVYAVGLPASIASEDVLRKPEYFGQYGKIAKIVINR--AISGDAGRRASASAYVTFVHKEDTLACILALDGFYL---------DNRNIRASYGTSKYCSAFIKSVRCNNPECTYLHEMGATEDTFTKQEIQAGYV-----TSGRDVLARQ 265          
BLAST of NO25G00820 vs. NCBI_GenBank
Match: EJK64137.1 (hypothetical protein THAOC_15160 [Thalassiosira oceanica])

HSP 1 Score: 218.4 bits (555), Expect = 9.300e-53
Identity = 177/377 (46.95%), Postives = 218/377 (57.82%), Query Frame = 0
Query:   13 EHCPLCCETLDITDRNFFPCPCEYQICCYCWNHIKENLNRLCPACRTPYADDPHNFSPVDLDEIMK-----------KXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYP---------------------------HKAATAAGYGGQPS-----GI-------SPTTGLP-IHSTTTTLRNIRVVQRNLAYVLGLPPSLASEETLRKGEYFGQYGKIVKVAVTRPAALGGSGATSAGCCAYVTFAHKEDARACIQALDNFVLPPSLAPADSSSRPIRASFGTTKYCNTFLRYVPCNNPECLFLHEAEDDSEGWTREEAQAWQV------------IMPGSTP------GTHVLVGQGGPSGTGK 321
            E CPLCCE LDI+D+NFFPC C YQ+C +CW+ I+E  + LCPACRTPY DDPH FS VD++E+++            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX YP                               ++ G G  PS     G         P+ G P      +TL ++RV++RNL Y +GLPP++A+EE LR+ EYFGQYGKI KV V R    G    +SA   AYVTF+HKEDA ACI ALD F             R +RAS+GT+KYC+ F++ V CNNP+C +LH   +  + +T++E QA  V            IM           G    VG GGPSGTG+
Sbjct:    8 EICPLCCEELDISDQNFFPCKCGYQVCMWCWHRIRETESGLCPACRTPYGDDPHEFSAVDMEEVVRANKEKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYPGLGXXXXXXXXXXXXXXXXXXXXXXXXXXXLSSGGLGSGPSLGQFDGADLVAALGGPSRGPPEPPKDRSTLASMRVIRRNLVYAVGLPPNVATEENLRRPEYFGQYGKIAKVVVNRNHNPGDPRRSSAS--AYVTFSHKEDALACILALDGFY---------HDGRNVRASYGTSKYCSAFIKSVRCNNPDCTYLHHMGEKEDTFTKQEIQAGYVTSGRDVLARQKQIMAQQAAAHFGGVGAKTRVGGGGPSGTGR 373          
BLAST of NO25G00820 vs. NCBI_GenBank
Match: CBJ29708.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 215.3 bits (547), Expect = 7.900e-52
Identity = 159/313 (50.80%), Postives = 192/313 (61.34%), Query Frame = 0
Query:   15 CPLCCETLDITDRNFFPCPCEYQICCYCWNHIKENLNRLCPACRTPYADDPHNFSPVDLDEIMKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYPHKAATAAGYGGQPSGISPTTGLPIHSTTT--TLRNIRVVQRNLAYVLGLPPSLASEETLRKGEYFGQYGKIVKVAVTRPAALGGSGATSAGCCAYVTFAHKEDARACIQALDNFVLPPSLAPADSSSRPIRASFGTTKYCNTFLRYVPCNNPECLFLHEAEDDSEGWTREEAQAWQVIMPGSTPGTHVLVGQGGPSGTGKRVAHP 326
            CPLCCE +D++D+NF PCPC Y++C +CW+ IKEN   LCPACR+ YADDPH F+ VD +E++K XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                            S      L N+RVVQRNL Y  GLP  L SEE LR+ E FGQYGKI K+A++   A   S        A++TFAHKEDA ACI A D F L           R +R++FGTTKYC T+LR  PC+NP+CL+LHE  D+ + +T+EE Q   ++ P                GTG R   P
Sbjct:   18 CPLCCEPMDLSDKNFVPCPCGYRVCMWCWHRIKENYTGLCPACRSEYADDPHAFAAVDKEEVIKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSVANRRELANMRVVQRNLVYATGLPAGLDSEEVLRRPENFGQYGKIYKIAISVSQA---SEPRPGNFSAHITFAHKEDALACILATDGFWL---------EGRQLRSNFGTTKYCATYLRNSPCSNPDCLYLHELGDEEDRFTKEEIQQRSLLAPXXXXXXXXXXXXXXXXGTGMRCNSP 318          
BLAST of NO25G00820 vs. NCBI_GenBank
Match: XP_002177943.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC50757.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 213.8 bits (543), Expect = 2.300e-51
Identity = 110/282 (39.01%), Postives = 150/282 (53.19%), Query Frame = 0
Query:   15 CPLCCETLDITDRNFFPCPCEYQICCYCWNHIKENLNRLCPACRTPYADDPHNFSPVDLDEIMKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYPHKAATAAGYGGQPSGISPTTGLPIHSTTTTLRNIRVVQRNLAYVLGLPPSLASEETLRKGEYFGQYGKIVKVAVTRPAALGGSGATS-----AGCCAYVTFAHKEDARACIQALDNFVLPPSLAPADSSSRPIRASFGTTKYCNTFLRYVPCNNPECLFLHEAEDDSEGWTREE 292
            CPLCCE LD++D++F+PCPC YQ+C +CW+ IKE+ + LCPACR+PY +DPH FS VD++  +K                                                                 L   +  T L N+RV++RNL Y +GLPPS+A+EETLRK EYFGQYG+I K+ + R      +   +     A   AYVTFAHKED  ACI ALD  VL           R +R S+GT+KYC++F++ V CNNPEC +LHE   + + +T++E
Sbjct:    4 CPLCCEELDLSDQSFYPCPCGYQVCMWCWHRIKESESGLCPACRSPYGEDPHQFSAVDVEAALK--------------------------------------------------------------ANKLKEDADRTLLANMRVIRRNLIYAVGLPPSIANEETLRKPEYFGQYGRIAKMVLNRNNVTASNTVINGEIRRASASAYVTFAHKEDTLACILALDGLVL---------DHRSVRVSYGTSKYCSSFIKSVRCNNPECTYLHEMGAEEDTFTKQE 214          
BLAST of NO25G00820 vs. NCBI_GenBank
Match: XP_002288832.1 (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >EED94268.1 predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 209.9 bits (533), Expect = 3.300e-50
Identity = 111/277 (40.07%), Postives = 145/277 (52.35%), Query Frame = 0
Query:   15 CPLCCETLDITDRNFFPCPCEYQICCYCWNHIKENLNRLCPACRTPYADDPHNFSPVDLDEIMKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYPHKAATAAGYGGQPSGISPTTGLPIHSTTTTLRNIRVVQRNLAYVLGLPPSLASEETLRKGEYFGQYGKIVKVAVTRPAALGGSGATSAGCCAYVTFAHKEDARACIQALDNFVLPPSLAPADSSSRPIRASFGTTKYCNTFLRYVPCNNPECLFLHEAEDDSEGWTREE 292
            CPLCCE LD++D+ F+PC C YQ+C +CW+ IKE+ + LCPACRTPY DDPH FS + +                                                 H+A+  A      S   P          +TL  +RV++RNL Y +G+PPS+A+EE LRK EYFGQYGKI K+ + R    G     SA   AYVTF HKED  ACI ALD F             R IRAS+GT+KYC+ F++ V CNNP+C +LH   D  + +T++E
Sbjct:    1 CPLCCEELDLSDKQFYPCKCGYQVCMWCWHRIKESESGLCPACRTPYGDDPHEFSAIGIH------------------------------------------------HQASDFASLLASNSRGPPEP----PKDRSTLATMRVIRRNLVYAVGMPPSIATEELLRKPEYFGQYGKIAKIVINRNHNPGDPRRASAS--AYVTFVHKEDTLACILALDGFY---------HDGRNIRASYGTSKYCSAFIKSVKCNNPDCTYLHHMGDQEDTFTKQE 214          
BLAST of NO25G00820 vs. NCBI_GenBank
Match: XP_024581671.1 (rna recognition motif-containing protein [Plasmopara halstedii] >CEG45302.1 rna recognition motif-containing protein [Plasmopara halstedii])

HSP 1 Score: 208.4 bits (529), Expect = 9.700e-50
Identity = 116/290 (40.00%), Postives = 147/290 (50.69%), Query Frame = 0
Query:    4 SQSDXXXXXEHCPLCCETLDITDRNFFPCPCEYQICCYCWNHIKENLNRLCPACRTPYADDPHNFSPVDLDEIMKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYPHKAATAAGYGGQPSGISPTTGLPIHSTTTTLRNIRVVQRNLAYVLGLPPSLASEETLRKGEYFGQYGKIVKVAVTRPAALGGSGATSAGCCAYVTFAHKEDARACIQALDNFVLPPSLAPADSSSRPIRASFGTTKYCNTFLRYVPCNNPECLFLHEAEDDSEGWTREEAQ 294
            + SD     + CPLC E LDITD+ F  CPC YQ+C +CW+ IK   N LCPACR PYA+     +P D DE++++                                            K  T      Q    +            +L+N+RV+QRNL YV+GLP   A E+ LR  E FGQYGKIVK  V +      +   +A   AY+TFAHKEDA  CI A+D + L  SL         +RASFGTTKYCN FLR + CNNPECL+LHE  DD + +T+EE Q
Sbjct:   38 NMSDYNEEADCCPLCMEELDITDQTFNACPCGYQVCLWCWHQIKNEYNGLCPACRQPYAEISKQKNPPDRDEVVRRTKQRKL--------------------------------------KEKTERRSAAQAKNAT--------VNRKSLQNVRVMQRNLVYVIGLPVQFADEDILRSNECFGQYGKIVKAVVNKSHL--NTDRANATASAYITFAHKEDALCCIVAIDGYYLDGSL---------LRASFGTTKYCNFFLRNMQCNNPECLYLHELGDDDDSFTKEEMQ 270          
BLAST of NO25G00820 vs. NCBI_GenBank
Match: OEU09417.1 (hypothetical protein FRACYDRAFT_159768, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 205.3 bits (521), Expect = 8.200e-49
Identity = 108/283 (38.16%), Postives = 145/283 (51.24%), Query Frame = 0
Query:   15 CPLCCETLDITDRNFFPCPCEYQICCYCWNHIKENLNRLCPACRTPYADDPHNFSPVDLDEIMKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYPHKAATAAGYGGQPSGISPTTGLPIHSTTTTLRNIRVVQRNLAYVLGLPPSLASEETLRKGEYFGQYGKIVKVAVTRPAALGGSGATSAGCCAYVTFAHKEDARACIQALDNFVLPPSLAPADSSSRPIRASFGTTKYCNTFLRYVPCNNPECLFLHEAEDDSEGWTREEAQAWQV 298
            CPLCCE LDI+DR FFPC C YQ+C +CW+ I+E+ + LCPACRTPY DDPH FS VD++E++K                                         +    AA         +G      + +    T L N+RV++RNL Y +GLPP++ASE+ LRK +YFGQY                     A   AYVTF HKED  +CI ALD F +           R +R+S+GT+KYC+ F++ V CNNPEC +LH      + +T++E QA  V
Sbjct:    2 CPLCCEELDISDRQFFPCKCGYQVCMWCWHRIRESESGLCPACRTPYGDDPHEFSAVDVEEVLK---------------------------------------ANKEKEAAAKEERNLDSLAGGRQVGQMEVPKDRTQLANMRVIRRNLVYAVGLPPNVASEDALRKSDYFGQY---------------------ASASAYVTFVHKEDTLSCILALDGFYM---------DGRNVRSSYGTSKYCSAFIKNVRCNNPECTYLHNMGHIEDTFTKQEIQAGYV 215          
BLAST of NO25G00820 vs. NCBI_GenBank
Match: XP_009526103.1 (hypothetical protein PHYSODRAFT_331074 [Phytophthora sojae] >EGZ17045.1 hypothetical protein PHYSODRAFT_331074 [Phytophthora sojae])

HSP 1 Score: 200.3 bits (508), Expect = 2.600e-47
Identity = 121/280 (43.21%), Postives = 156/280 (55.71%), Query Frame = 0
Query:   15 CPLCCETLDITDRNFFPCPCEYQICCYCWNHIKENLNRLCPACRTPYADDPHNFSPVDLDEIMKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYPHKAATAAGYGGQPSGISPTTGLPIHSTTTTLRNIRVVQRNLAYVLGLPPSLASEETLRKGEYFGQYGKIVKVAVTRPAALGGSGATSAGCCAYVTFAHKEDARACIQALDNFVLPPSLAPADSSSRPIRASFGTTKYCNTFLRYVPCNNPECLFLHEAEDDSEGWTREEAQA 295
            CPLC E LDITD+ F  CPC YQ+C +CW+ IK   N LCPACR PYA+     +P+D +E++++    XXXXXXXXXXX                             K+AT                        +L+N+RV+QRNL YV+GLP   A E+ LR  E FGQYGKIVK  V +      +   +A   AY+TFA+KEDA  CI A+D + L  SL         +RASFGTTKYCN FLR + CNNP+CL+LHE  D+ + +T+EE Q+
Sbjct:   10 CPLCMEELDITDKTFNACPCGYQVCLWCWHQIKNEYNGLCPACRQPYAELSKQKNPLDREEVVRRTKQRXXXXXXXXXXXAQA--------------------------KSATV--------------------NRKSLQNVRVMQRNLVYVIGLPVHFAEEDILRSNECFGQYGKIVKAVVNKSHL--SADRQNATASAYITFANKEDALCCIVAIDGYYLDGSL---------LRASFGTTKYCNFFLRNMQCNNPDCLYLHELGDEDDSFTKEEMQS 232          
The following BLAST results are available for this feature:
BLAST of NO25G00820 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21601.12.300e-11267.57ccr4-not transcription complex subunit [Nannochlor... [more]
GAX23216.19.900e-6338.58CCR4-NOT transcription complex subunit 4 [Fistulif... [more]
GAX10407.12.400e-5640.07CCR4-NOT transcription complex subunit 4 [Fistulif... [more]
EJK64137.19.300e-5346.95hypothetical protein THAOC_15160 [Thalassiosira oc... [more]
CBJ29708.17.900e-5250.80conserved unknown protein [Ectocarpus siliculosus][more]
XP_002177943.12.300e-5139.01predicted protein, partial [Phaeodactylum tricornu... [more]
XP_002288832.13.300e-5040.07predicted protein, partial [Thalassiosira pseudona... [more]
XP_024581671.19.700e-5040.00rna recognition motif-containing protein [Plasmopa... [more]
OEU09417.18.200e-4938.16hypothetical protein FRACYDRAFT_159768, partial [F... [more]
XP_009526103.12.600e-4743.21hypothetical protein PHYSODRAFT_331074 [Phytophtho... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL046nonsL046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL045nonsL045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR043ncniR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR074ngnoR074Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004347NSK004347Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G00820.1NO25G00820.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673536gene_8567Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100012g55gene8828Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G00820.1NO25G00820.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G00820 ID=NO25G00820|Name=NO25G00820|organism=Nannochloropsis oceanica|type=gene|length=3778bp
ATGAGCATGTCGCAGAGTGACGACGAAGAGGAGGAAGAGCATTGCCCGCT
ATGTTGCGAGACGTTGGACATCACGGACAGGAACTTCTTTCCGTGCCCTT
GCGAGTACCAGgtatgttttggggtggagaggatggagggataggttttg
gcgtcctgtagaggcgttgcgaacagcatgcgtacacaattaatgcacgc
atgtctagatatctaagcatctatttagaaaccacatcactcgccgggaa
aggagatggatggccgtcgggcatttatacgtatgtcactgatgttccct
ccatccctcctcccctccctccttccttccctcctgtcagATCTGTTGCT
ACTGCTGGAACCACATCAAGGAAAACCTCAATAGACTGTGTCCGGCTTGT
CGCACCCCCTATGCGGATGATCCCCACAATTTCTCTCCGGTTGACTTGGA
CGAgtacgtacataggagtgagagagtgagggagggaaggagtgcttgtc
tgtcaagatcagccaccccactctctttaccccccccctctatcgcacag
GATCATGAAAAAGCGCAAAGAGAAGAAAAAACGTGACCGGCTCGAACGTC
GGGAGCGGGAGCGGGAGCGGGACCAAAAGGAAAGAGAAAAGAACGACCGC
CGGGAACGAGAACTGGCACGAAATGAGCACGACAGATACCCCCACAAGGC
CGCCACTGCCGCAGGCTACGGCGGCCAACCAAGCGGCATCAGCCCTACCA
CCGGCCTTCCTATCCATTCCACTACCACgtacctcctgtcccccaacggg
ggtcccacctaccacaacctccccccctccatggccctccctccccccct
cccttccccccccccccccccccaccactatcgtcacaaccatccaaccc
ctccgcatttgtcgaccggagTACCTTGAGAAATATCCGGGTGGTGCAGC
GGAATCTTGCCTATGTCCTTGGCCTCCCTCCCTCCCTGGCCTCGGAAGAG
ACCCTGCGCAAAGGAGAGTATTTTGGGCAGTACGGAAAGATAGTCAAGgt
acgtccctcccttcccttctctttttgcctgcctccctatcttccttcct
tactaacttctgttttatcccgcatcctcaccctcccccctccctccctc
ccttttcagGTGGCCGTGACCCGCCCAGCTGCCTTGGGAGGGTCCGGGGC
GACATCAGCTGGCTGTTGTGCATACGTCACATTCGCTCACAAAGAAGACG
CCCGCGCCTGTATCCAAGCGCTCGACAACTTCGTCCTTCCTCCCTCCCTC
GCTCCTGCTGACAGCAGCAGCAGACCCATCCGAGCCTCGTTCGGGACGAC
TAAATACTGCAACACTTTCTTGAGgtagtccattcctccccccttcctcc
ctttctccttccctccctccctccccctcgctctctttctccattcatct
ccctctgccttccttccccccctccgtttcttagtcgaactgatctctcc
tgcaccacatgcctctccctctttcctccctcccttccatctttcagATA
CGTCCCTTGCAACAACCCCGAATGCCTCTTCCTCCATGAGGCAGAAGATG
ACTCAGAGGGATGGACAAGGGAGGAGGCACAGGCCTGGCAGGTCATTATG
CCGGGGTCCACTCCAGGCACACACGTCCTGGTGGGGCAAGGCGGACCGAG
TGGCACCGgtatgtatttaccttccctccctccctccaacccacccctcg
cggaatcccgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttcc
catttttcattttaaataagtcaatatttcatatgtatataaataaaaaa
tagttacatattcattcggtcgttcactaatgtattaccacgtatttcaa
tatcgtacattgtttatctgctaatttaatgattctatacacaaataata
tacctttacagGCAAGAGGGTAGCCCACCCCGTCTTTCCCCCTCCCCGCT
GGGAGGAACCCCTCTCGGATCCCTCAACAGGAGGAGCAGGAGGAGCAGCA
ACAGCGACAGTCACAGCAGCGGGCACCACCAAACCAAAACCCCACCTTAC
ACGTCCGCCAGCCAACCCCTGGCAGCAACATGTAGCCACCCAGCAACAGC
AGCAGCAACAGCAGCAGCAGCAGCCGACCCCTGCTCAGGCCGCGCTCCTG
TCAACGTCCTCTTCCCCCTCTCGTGCTGGCGCTGGTGGAGGCACCAACGG
CATGGGCCTGCCAAGCCCATCCACACGAATAAAAGCCTCTACTGCTGCGG
CCAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATGAGGCATTTCCCCCT
CCACAAGTGCCCCTATCAGCAACAACCTCAGCCGTGGCAGCAGCAGCAAC
AGCAGCCGCCGCAGTAGCAAGAGGAAGCTCAACCGCGGGGCCAGAATCAG
GAGGCACAGCAGCGCGAGGAGGAGGGAGGGAAGGAGGGACAGGGGGGTTC
CCACCACCACCACCTGGAATTGTCTCTCCGCCTCAGCCGCCGGCACTTCC
CCCAGGCATCCTCCCTTTCGATCTAGGAGGAGGGGAGGGAGGGAGGGAGG
GAGGATCTACGGGAGGGCTCGCGTTCTTATTTAATGGAGGAGGGGAGGGA
GGAGGAAGGGGGGAGGCGTCCCCCCCAAGTTCGTTGTTCAACGGGGAGGA
CAGGCTAGGAGGTATAGGTGGGATGCCGCTGCCAGGGGTGAGGGAGGGAG
GGAGGGAGGGAGGTAGAACAGGGGCTGTCGGAGGAGCCTCCGGCCCCATG
TCGGAGGGGAAAACTATCAGGCCACCGGTGGAACGAAGGGCGAGCGGGAG
GAATGGAGGGATGGAGGGAGGGGGAGGAAGAGGAAGAGGGCTGTTTGCGA
ACGCCGGCTGGGCAGGAGGGGAGGAAGGGGAGGAGCTTCTTCCATCGCTC
GCTCCTCCTCGAGGGGTGTTCGAGAAGGGAGAGCAGAAGGGAAATAGCTA
CATAGACAACATTCAGATCATGCTCCAGCAGCAGCAGCAGCAGCAGCAGA
ACCCGCTTTTCCCAGCTTTCCCCTTTCCGGGCCCGGGTCCTTTGACTGCC
GCAGCTCCTTCTGCTGTTGCTCCTCCTCCTCTTTCTGCCTCGTCCGCAAC
CAGCAGCAGCAGCAGCAGTGGCGGCGGCAGCTCTGCTCCTCAACGCGAGC
CGTTCACGGCCACCGAATCCCTGGCTCATCTGTTAGGGCTCAAACTCCCT
CGTTCCTCCTCCTCCCTCCCTTCCCGCGGCCATTACGCCATAATACCTGC
ACAGACCCCCCTTCTCCAATCCCTTCCCCCTCCTCATCCTTCTAGCAATT
TGCCGAGCTCGAGATATTCTTTCGCGAAAGATGAAGGAGGAGGAGGGGGG
GGGGTTGATGAGCTTTTGGTAAGTGGTGGCACGAAAGTGGGGCATTCCCA
TCGACCGCAGCATGGTGGAGGGGGAGGGGGGTTCTTTCCGATCAGGGTTG
GTGAATTAGGAGGAGGTGTTGGTGGGAAAGGAGGAGGAGGAGGAAGAGCA
GCAGGAGGAGCAGCAGGAGGAGCAGGAGGGGTGGGCCCTTCACTTCAATC
GGGCGTGGCGCTGCTGCAGCAGCTGCTGCCCAACTGCTCCATCACATACG
GAGCTGGAGCGACGAAAACTTCCTCTTCTTCCGTCCCTTCTTCAGTCGCT
CCTGCGCAGAGTGGTGATATGGGAGGAAATGGGGGGAATAAGAAGGGGAA
AGAGGCGTTTAGGCAGTCCATCTTTTAG
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protein sequence of NO25G00820.1

>NO25G00820.1-protein ID=NO25G00820.1-protein|Name=NO25G00820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=924bp
MSMSQSDDEEEEEHCPLCCETLDITDRNFFPCPCEYQICCYCWNHIKENL
NRLCPACRTPYADDPHNFSPVDLDEIMKKRKEKKKRDRLERRERERERDQ
KEREKNDRRERELARNEHDRYPHKAATAAGYGGQPSGISPTTGLPIHSTT
TTLRNIRVVQRNLAYVLGLPPSLASEETLRKGEYFGQYGKIVKVAVTRPA
ALGGSGATSAGCCAYVTFAHKEDARACIQALDNFVLPPSLAPADSSSRPI
RASFGTTKYCNTFLRYVPCNNPECLFLHEAEDDSEGWTREEAQAWQVIMP
GSTPGTHVLVGQGGPSGTGKRVAHPVFPPPRWEEPLSDPSTGGAGGAATA
TVTAAGTTKPKPHLTRPPANPWQQHVATQQQQQQQQQQQPTPAQAALLST
SSSPSRAGAGGGTNGMGLPSPSTRIKASTAAAKQQQQQQQQQHEAFPPPQ
VPLSATTSAVAAAATAAAAVARGSSTAGPESGGTAARGGGREGGTGGFPP
PPPGIVSPPQPPALPPGILPFDLGGGEGGREGGSTGGLAFLFNGGGEGGG
RGEASPPSSLFNGEDRLGGIGGMPLPGVREGGREGGRTGAVGGASGPMSE
GKTIRPPVERRASGRNGGMEGGGGRGRGLFANAGWAGGEEGEELLPSLAP
PRGVFEKGEQKGNSYIDNIQIMLQQQQQQQQNPLFPAFPFPGPGPLTAAA
PSAVAPPPLSASSATSSSSSSGGGSSAPQREPFTATESLAHLLGLKLPRS
SSSLPSRGHYAIIPAQTPLLQSLPPPHPSSNLPSSRYSFAKDEGGGGGGV
DELLVSGGTKVGHSHRPQHGGGGGGFFPIRVGELGGGVGGKGGGGGRAAG
GAAGGAGGVGPSLQSGVALLQQLLPNCSITYGAGATKTSSSSVPSSVAPA
QSGDMGGNGGNKKGKEAFRQSIF*
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Synonyms
Publications