NO25G00790, NO25G00790 (gene) Nannochloropsis oceanica

Overview
NameNO25G00790
Unique NameNO25G00790
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3656
Alignment locationchr25:216294..219949 +

Link to JBrowse

Properties
Property NameValue
DescriptionAnkyrin repeat domain-containing protein 50
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:216294..219949 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
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BLAST of NO25G00790 vs. NCBI_GenBank
Match: EWM21597.1 (ankyrin repeat domain-containing protein 50 [Nannochloropsis gaditana])

HSP 1 Score: 351.7 bits (901), Expect = 5.900e-93
Identity = 379/531 (71.37%), Postives = 409/531 (77.02%), Query Frame = 0 
Query:  128 DFQAEVAAFLADPATASKPDPPDLAAFMANPFAFNPKAKILNPEESLGKVDADGNTALIHAIKTGSEKAFFTLLHDKDLSYINRQNTKGATALNVASHRGQIEQVRALLTLAGADVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASRQVRLMQMEARVHRAHLLVKLYELNGAKRAFPVPDLVSSLALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMEGDDEEDGPRAGTRRSQETLCRALELPFPLFRNIERFLPWPRMWGPLLPILHKRCHVDANEALRGALSIMDEVLTDLGVSNDPVQEMHLVRAACSPSIRACLWEKHGMPPDMVASIVRWNDAQSILARFERGVTFSPLVADRAVKDAARLYLWVGLG 659
            D +  VAA+L DPATA KPDPPD+ +FM +PF +NPKAKILNPEE+ GKVDADGNTALI AIK GSEKAFF LL  KD +YINRQN+KGATALNVA+HRG +  VR LL  A     XXXXXXXXXXXXXXXXXXXXXXXXXX   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASRQVRLMQ EAR+ R+ +LV +YEL G KRA P+P++ + LA                                                        +G  E  GP A  RR  ++       PFPLFR+IERF+PWPR+WGPLLPILHKRCHVDANEALRGALSIMDEVLTDL VS D VQEMHLVRAA  P++RACL  K GMP D+ A+IVRWNDAQSILARFERGVTFSPLVADRAVKDAARLY W+ LG
Sbjct:   45 DLRERVAAYLRDPATALKPDPPDVPSFMESPFRYNPKAKILNPEETQGKVDADGNTALIMAIKAGSEKAFFLLLDGKDQAYINRQNSKGATALNVAAHRGYVAPVRELLDTAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASRQVRLMQQEARIVRSRVLVHMYELLGRKRAVPIPEVAAGLA---------------------------ARENRRRSREEARRAQTQRQEWGKRAYGRKGGGE--GPMAVGRR--KSCAGPWSSPFPLFRHIERFIPWPRLWGPLLPILHKRCHVDANEALRGALSIMDEVLTDLNVSTDAVQEMHLVRAAAYPAMRACLCAKRGMPSDLAATIVRWNDAQSILARFERGVTFSPLVADRAVKDAARLYHWLCLG 544
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BLAST of NO25G00790 vs. NCBI_GenBank
Match: XP_005854207.1 (nacht and ankyrin domain protein, partial [Nannochloropsis gaditana CCMP526] >EKU22146.1 nacht and ankyrin domain protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 159.5 bits (402), Expect = 4.300e-35
Identity = 80/112 (71.43%), Postives = 91/112 (81.25%), Query Frame = 0 
Query:  128 DFQAEVAAFLADPATASKPDPPDLAAFMANPFAFNPKAKILNPEESLGKVDADGNTALIHAIKTGSEKAFFTLLHDKDLSYINRQNTKGATALNVASHRGQIEQVRALLTLA 240
            D +  VAA+L DPATA KPDPPD+ +FM +PF +NPKAKILNPEE+ GKVDADGNTALI AIK GSEKAFF LL  KD +YINRQN+KGATALNVA+HRG +  VR LL  A
Sbjct:   45 DLRERVAAYLRDPATALKPDPPDVPSFMESPFRYNPKAKILNPEETQGKVDADGNTALIMAIKAGSEKAFFLLLDGKDQAYINRQNSKGATALNVAAHRGYVAPVRELLDTA 156
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BLAST of NO25G00790 vs. NCBI_GenBank
Match: CBN74287.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 95.1 bits (235), Expect = 9.900e-16
Identity = 57/153 (37.25%), Postives = 74/153 (48.37%), Query Frame = 0 
Query:  507 EDGPRAGTRRSQETLCRALELPF----PLFRNIERFLPWPRMWGPLLPILHKRCHVDANEALRGALSIMDEVLTDLGVSNDPVQEMHLVRAACSPSIRACLWEKHGMPPDMVASIVRWNDAQSILARFERG-VTFSPLVADRAVKDAARLYLW 655
            E  P      S   L R+L  P      +F +I  F+P PR+W   L  + +RCH+DA EA+R A  I+DEVL DL   + P    HLVR    PS+   L +   MPP +V ++  W   Q  +     G VTF P VA R V  A  L  W
Sbjct:  303 ETQPDVSGSASLSMLIRSLISPISSNRAVFEHIASFIPLPRLWDTSLEKIRRRCHIDATEAIREAFRIIDEVLADLNFVHGPDHGTHLVRLWEHPSLGQRLTQDLHMPPLLVQALRSWGGTQESVTSLAGGEVTFQPRVATRVVALATELVKW 455
The following BLAST results are available for this feature:
BLAST of NO25G00790 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM21597.15.900e-9371.37ankyrin repeat domain-containing protein 50 [Nanno... [more]
XP_005854207.14.300e-3571.43nacht and ankyrin domain protein, partial [Nannoch... [more]
CBN74287.19.900e-1637.25conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL046nonsL046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL045nonsL045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR043ncniR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR074ngnoR074Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004353NSK004353Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G00790.1NO25G00790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|208575gene_8564Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100012g59gene8832Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G00790.1NO25G00790.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G00790 ID=NO25G00790|Name=NO25G00790|organism=Nannochloropsis oceanica|type=gene|length=3656bp
TGGGGGGGCGGCGTTGCGGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGCTGCTGCTGCTGCTGCTTGCTCTTGCCCTTGGCGGTCACGGCGGCTAC
GGAAGCCCCACCAGGTTCATTCCCACGGCTGGTCGCCAGTGCCCCGCCGA
GAGGGGCCGTCTTTTTCTTCGTTCCCATAACTCTTTGGTCGTGCTTGACC
TTAAGCGTGTCGTATGCTTGGGTTGTGGAAAGGAAAGGTGGGGAGGTAAT
TGGTGGGTGGGGAGGGAGGGGAGGTCGACCAGCAACGGGTGCCCCCTAAA
AATGCAATTTCACTTGCACGTCAAAGAATATGGATAGCACGATGATCAGT
GTGCTGTGCACTTGTCCTTGGGGTGCGAGGTGCTTGGGAGAAAAACGCGG
GCTCGTAAGATATCAAGGCATGCTTGTCTCTTTGGCCCACGAGGAGTCTC
TTCGCCACGCGTTAAGCGAAGGCAAGGAAAGCTAATCCCATGTCAACGCA
CTCGGCCACGCCCGGCGTTCACGTGCTCACAAAAAAATCCCGAGGCGTTT
GCGGTGCACGCCTCGGCCGCAGCTATAGGGGCGAGAAGCGCGGTGTGGTG
CGTGAATGTCCACTGATTTGAAACATTGGACAGACGGAGGAGCCCGATAA
ATGCATTCTGTGTCTTTTGCCATATCTCCTTACGTATGTGTCATGTGCCA
CGCACGGACTCCTTCCCCCTCCACCTCATTTGGACATAGCTATAGGGAGC
AGCGCCCACTCTTGGCGCAGCTGCACGTGGCGCGGAGCAAGCGCAATACA
AGTAGCCAATATCCTGTCATCTCGTTCTGCACCAGCCTCGTCGTCACTGC
AACGATGGAGGAGCAACAAATCCCCCAACCCGCTCCACCAGCGGCAGCAG
GCGGTGCGGATGCGGCAGCACACACCCCTCCTAATCGGGTCAAGACCGGG
GGGACTGGTGGAGGAGGCGAGGAGGAGGGCACAGAGGCCATGATGGTCGT
GGATGGAGAGGAGATGGACCCCCCCTCCGCCGATTTCCAAGCGGAAGTCG
CCGCATTTCTGGCAGACCCCGCCACAGCGTCGAAGCCTGACCCGCCTGAT
CTCGCTGCCTTTATGGCGAACCCTTTCGCATTCAACCCGAAAGCGAAGAT
TTTGAACCCGGAGGAGAGCCTGGGCAAGGTGGACGCAGACGGGAACACAG
CGCTTATTCATGCCATTAAAACTGGGTCCGAAAAgtacgttgttgaacaa
agggagggagggaggggaaattggaagagggaggagggaaaaagtcttgg
atgtttatcgctttgattttgcggctgatatagtgtatgtgtgaatattt
cctcaacaaaactcgcccctccctccctccctttcccaccaaccacacag
AGCCTTCTTCACCCTCCTCCACGACAAAGATCTTTCCTACATCAACCGTC
AAAACACTAAGGGTGCCACGGCACTCAACGTTGCTTCTCACCGAGGTCAA
ATCGAGCAAGTTCGTGCCCTCCTTACCCTTGCCGGTGCCGACGTGAACAT
CCCCAACAGCAGCGGTAGCACCTCCCTCATCCAAGCCTCCCATTTCGGTC
ACACCGTCGTCGTCCGCCTCCTCCTTACCCATGGCGCCCACGTGGATCTT
CCTAACCATAAAGGGACCACCGCCCTGATGCGGGCGGCCCAGGAGGGACA
TTTACAAGTCGTCGCAGCGTTGCTCAACACAGGGGGGGACGTGAACAAGC
GCAACCACGAGCGGATGAATGCGCTGATGCTCGCATCCCAACGAGGGCAC
GATGGGATTGTGTCCCTCTTGATCAAGCAAGGGGCTGATATCGACTGCCA
GACCGTCCAGGGGTCCACGGCATTGATGCTTGCGTGCAAGCGGCAGCATG
AGGCGGTAGTACGCGTGTTATTGACGGCTGGGGCCGAAATGTTCGTCAAG
GACTCGAGAGGGAGGACAGCGAGGGATACTGCGCTCAAGAGAAATCACAA
ACCGATCATTGCGATGCTGCAGGCAAGTCGGCAGGTGAGGCTAATGCAGA
TGGAAGCCCGCGTCCACCGCGCTCATTTATTGGTGAAACTCTATGAATTA
AATGGCGCGAAGCGTGCTTTCCCTGTGCCAGATCTTGTGAGCAGTCTGGC
ACTGAAGGAGCGACAGCATCAGCAGCGTCGAGCGCGGGAGGAAAAGGAAC
GGCAGCGGCGACGGGCACAAGAGCAGCAGGATAAAGGGACAGGTATGGAG
GAGGGGGTGGGAGTGGGTGTCGGAAAGGTGAGATTGGAGGAGGAGGAAGA
GGGGGAGGAGGAAGGGATGGAGGGCGATGATGAGGAGGATGGACCTCGCG
CGGGTACCCGTCGATCGCAGGAAACTTTGTGCCGAGCGCTCGAGCTCCCC
TTTCCCCTCTTCCGAAACATTGAGCGCTTTCTCCCCTGGCCGCGGATGTG
GGGTCCCCTGCTTCCCATCCTTCACAAGAGGTGCCATGTGGATGCGAACG
AAGCCTTGCGTGGCGCCCTGTCGATCATGGACGAGGTTCTGACGGACCTG
GGGGTGTCCAACGACCCAGTCCAAGAAATGCATTTGGTGCGTGCTGCGTG
CTCTCCTTCGATTCGTGCCTGTCTGTGGGAGAAGCACGGGATGCCTCCTG
ATATGGTAGCGTCGATTGTCAGGTGGAACGACGCACAGAGCATCCTAGCT
CGATTTGAGAGAGGCGTGACTTTCAGTCCCCTGGTTGCTGACCGGGCCGT
AAAGGACGCGGCGAGGCTGTACCTCTGGGTCGGTTTGGGGGGGGATGAGC
CCGACTCGGAAAGGGAGGGGGAGGGGGAGGAGGAGGAGGGGAAGGTGGGG
GGGAGGATGAGGGTACGGGGGTGGAGATGGGACAGGATGAGGACGAAGAG
GAGGACGAGGAGCAGCAAGAGCAGCAGCAACAGATGGGTTTGCAGCAGCA
GCAAGAAGGAGGTGGGCTTATGCCAGCGCATCCACCGCATTTTGCCGCGC
ACCATCACCATCACCAGCAGCAGCTCCAAGACCATCACCAGCATAACCAG
CAGCAGCAGCAGCAGCAGCAACAGCAGCTACTGTAGCGCCGATAGTGGTG
GGAATTGCTCCTGCAGCGAGTAGTAGAGGCGGAGGAGGCGGGGGCGGTGG
AGCGGTAGCTACGACGGCGACGTAAACGCAATAGGGGGATGGGGGACAGA
AGGGGACAGAGTCTGAAAGCGGGTGGTAAGAGAGAAGAGAGGGAGGGAGG
AGTATATGCGCATGTATGAAAGTGGGTACGGAAAGTAACAGGAAATGAAA
GATGGGAATACAAGGAAAGAGGGGAAGGCGATTTCCCAACTTTTAATGGC
AATCATTCCGGAGAACATATGTACAGATGCAACACGGGAGAAATGCTTTC
TGACATGCTCTTCTGTGCAGACGAAAGAAAGATCCACACGCGTCGGTCGT
TTCCGTGTGCCAAAAAGGAATAGATGGATTGTGACGAATTAGAGTTTGGA
CAAGGTTTGTGTGTGTGTGTCTTTATGCTTCGATGAGCGAGCAACTGTAC
TTTAGGTAGCAGCAAGGAATATAGGGCAGCAAGGAATATAGGAGGTGAGT
CAGAGGATAAGATCAGCCAGTCACGCAAGAAAAACTGTTAAAGCTCCGTG
TTGTCA
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protein sequence of NO25G00790.1

>NO25G00790.1-protein ID=NO25G00790.1-protein|Name=NO25G00790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=769bp
MHSVSFAISPYVCVMCHARTPSPSTSFGHSYREQRPLLAQLHVARSKRNT
SSQYPVISFCTSLVVTATMEEQQIPQPAPPAAAGGADAAAHTPPNRVKTG
GTGGGGEEEGTEAMMVVDGEEMDPPSADFQAEVAAFLADPATASKPDPPD
LAAFMANPFAFNPKAKILNPEESLGKVDADGNTALIHAIKTGSEKAFFTL
LHDKDLSYINRQNTKGATALNVASHRGQIEQVRALLTLAGADVNIPNSSG
STSLIQASHFGHTVVVRLLLTHGAHVDLPNHKGTTALMRAAQEGHLQVVA
ALLNTGGDVNKRNHERMNALMLASQRGHDGIVSLLIKQGADIDCQTVQGS
TALMLACKRQHEAVVRVLLTAGAEMFVKDSRGRTARDTALKRNHKPIIAM
LQASRQVRLMQMEARVHRAHLLVKLYELNGAKRAFPVPDLVSSLALKERQ
HQQRRAREEKERQRRRAQEQQDKGTGMEEGVGVGVGKVRLEEEEEGEEEG
MEGDDEEDGPRAGTRRSQETLCRALELPFPLFRNIERFLPWPRMWGPLLP
ILHKRCHVDANEALRGALSIMDEVLTDLGVSNDPVQEMHLVRAACSPSIR
ACLWEKHGMPPDMVASIVRWNDAQSILARFERGVTFSPLVADRAVKDAAR
LYLWVGLGGDEPDSEREGEGEEEEGKVGGRMRVRGWRWDRMRTKRRTRSS
KSSSNRWVCSSSKKEVGLCQRIHRILPRTITITSSSSKTITSITSSSSSS
SNSSYCSADSGGNCSCSE*
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Synonyms
Publications