NO25G00650, NO25G00650 (gene) Nannochloropsis oceanica

Overview
NameNO25G00650
Unique NameNO25G00650
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1266
Alignment locationchr25:181163..182428 +

Link to JBrowse

Properties
Property NameValue
DescriptionmRNA splicing factor, Cwf21
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:181163..182428 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013170mRNA_splic_Cwf21
Homology
[Close]
BLAST of NO25G00650 vs. NCBI_GenBank
Match: EWM21643.1 (mRNA splicing factor, Cwf21 [Nannochloropsis gaditana])

HSP 1 Score: 253.4 bits (646), Expect = 1.200e-63
Identity = 132/163 (80.98%), Postives = 145/163 (88.96%), Query Frame = 0 
Query:    1 MYNGIGLATARGSATSGYVTKNRGYVPPRRIRQETALVSGRGGPQDTFKAAVLAKANQEILEHKRKRQIEAQVYELQENMRDQGYTDVEIEGKAKTLREQLERNTSALVPAKKKG--GGAMTDTHEVAARKAEENEKLRHAFGIAKDHVEGETWDPEARDRRR 162
            MYNGIGL TARGSATSGYVTKNRGYVPPRR+RQETALVSG GGPQDTFKAAVLAKANQEILEHKRKRQIEAQVYE++E MRDQGY++ EI+ KA  LRE+L+ N  ALV A K G  G  MTDTHEVAARKAEE E+LR+AFGIA+DHVEGETWDPEA++RRR
Sbjct:    1 MYNGIGLQTARGSATSGYVTKNRGYVPPRRVRQETALVSGHGGPQDTFKAAVLAKANQEILEHKRKRQIEAQVYEMEERMRDQGYSESEIKDKATALRERLKGNNLALVAANKTGGEGSEMTDTHEVAARKAEEIERLRNAFGIAQDHVEGETWDPEAQNRRR 163
[Close]
BLAST of NO25G00650 vs. NCBI_GenBank
Match: XP_017350656.1 (PREDICTED: serine/arginine repetitive matrix protein 2-like [Ictalurus punctatus])

HSP 1 Score: 113.2 bits (282), Expect = 1.900e-21
Identity = 65/163 (39.88%), Postives = 97/163 (59.51%), Query Frame = 0 
Query:    1 MYNGIGLATARGSATSGYVTKNRGYVPPRRIRQETALVSGRGGPQD-----TFKAAVLAKANQEILEHKRKRQIEAQVYELQENMRDQGYTDVEIEGKAKTLREQLERNTSALVPAKKKGGGAMTDTHEVAARKAEENEKLRHAFGIAKDHVEGETWDPEARD 159
            MYNGIGL T RGS T+GYV +N   V  +R R +       GGP+D       ++ +  + N +ILEH+RKRQ+E +  ELQ+ M +QGY+  EIE K  + R  L+       P  +K    +T+TH +AA   ++N++LR AFGI  D+V+G ++ PE ++
Sbjct:    1 MYNGIGLTTPRGSGTNGYVQRNLSSVRAKRSRDD------HGGPKDEKDRERLESQLNRQPNADILEHQRKRQLEVKCAELQDMMEEQGYSAEEIEEKVSSFRMMLQEKQDPPAPTAEKAN--VTETHALAAANQQKNDRLREAFGIGSDYVDGSSFHPERKE 155
[Close]
BLAST of NO25G00650 vs. NCBI_GenBank
Match: AAH71371.1 (Srrm2 protein, partial [Danio rerio])

HSP 1 Score: 112.8 bits (281), Expect = 2.500e-21
Identity = 66/162 (40.74%), Postives = 99/162 (61.11%), Query Frame = 0 
Query:    1 MYNGIGLATARGSATSGYVTKNRGYVPPRRIRQETALVSGRGGPQD-----TFKAAVLAKANQEILEHKRKRQIEAQVYELQENMRDQGYTDVEIEGKAKTLREQLERNTSALVPAKKKGGGAMTDTHEVAARKAEENEKLRHAFGIAKDHVEGETWDPEAR 158
            MYNGIGL T RGS T+GYV +N   +  +R R E      RGG +D       ++ +  + N +ILEH+RKRQ+E +  ELQ+ M +QGY+  EIE K  T R  L+       P  +K   A+T+TH +AA   ++N++LR AFGI+ D+V+G +++P+ +
Sbjct:    1 MYNGIGLTTPRGSGTNGYVQRNLSSIRVKRNRDE------RGGERDEKDKERLESQLNRQPNADILEHQRKRQLEVKCAELQDMMEEQGYSAEEIEEKVNTFRLMLQERQEPAPPPTEK--TAVTETHALAAANQQKNDRLRQAFGISSDYVDGSSFNPDRK 154
[Close]
BLAST of NO25G00650 vs. NCBI_GenBank
Match: AAI24139.1 (Srrm2 protein, partial [Danio rerio])

HSP 1 Score: 112.8 bits (281), Expect = 2.500e-21
Identity = 66/162 (40.74%), Postives = 99/162 (61.11%), Query Frame = 0 
Query:    1 MYNGIGLATARGSATSGYVTKNRGYVPPRRIRQETALVSGRGGPQD-----TFKAAVLAKANQEILEHKRKRQIEAQVYELQENMRDQGYTDVEIEGKAKTLREQLERNTSALVPAKKKGGGAMTDTHEVAARKAEENEKLRHAFGIAKDHVEGETWDPEAR 158
            MYNGIGL T RGS T+GYV +N   +  +R R E      RGG +D       ++ +  + N +ILEH+RKRQ+E +  ELQ+ M +QGY+  EIE K  T R  L+       P  +K   A+T+TH +AA   ++N++LR AFGI+ D+V+G +++P+ +
Sbjct:    1 MYNGIGLTTPRGSGTNGYVQRNLSSIRVKRNRDE------RGGERDEKDKERLESQLNRQPNADILEHQRKRQLEVKCAELQDMMEEQGYSAEEIEEKVNTFRLMLQERQEPAPPPTEK--TAVTETHALAAANQQKNDRLRQAFGISSDYVDGSSFNPDRK 154
[Close]
BLAST of NO25G00650 vs. NCBI_GenBank
Match: NP_001025246.2 (serine/arginine repetitive matrix 2 [Danio rerio])

HSP 1 Score: 112.8 bits (281), Expect = 2.500e-21
Identity = 66/162 (40.74%), Postives = 99/162 (61.11%), Query Frame = 0 
Query:    1 MYNGIGLATARGSATSGYVTKNRGYVPPRRIRQETALVSGRGGPQD-----TFKAAVLAKANQEILEHKRKRQIEAQVYELQENMRDQGYTDVEIEGKAKTLREQLERNTSALVPAKKKGGGAMTDTHEVAARKAEENEKLRHAFGIAKDHVEGETWDPEAR 158
            MYNGIGL T RGS T+GYV +N   +  +R R E      RGG +D       ++ +  + N +ILEH+RKRQ+E +  ELQ+ M +QGY+  EIE K  T R  L+       P  +K   A+T+TH +AA   ++N++LR AFGI+ D+V+G +++P+ +
Sbjct:    1 MYNGIGLTTPRGSGTNGYVQRNLSSIRVKRNRDE------RGGERDEKDKERLESQLNRQPNADILEHQRKRQLEVKCAELQDMMEEQGYSAEEIEEKVNTFRLMLQERQEPAPPPTEK--TAVTETHALAAANQQKNDRLRQAFGISSDYVDGSSFNPDRK 154
[Close]
BLAST of NO25G00650 vs. NCBI_GenBank
Match: AAH95137.1 (Srrm2 protein [Danio rerio] >AAI65030.1 Srrm2 protein [Danio rerio])

HSP 1 Score: 112.8 bits (281), Expect = 2.500e-21
Identity = 66/162 (40.74%), Postives = 99/162 (61.11%), Query Frame = 0 
Query:    1 MYNGIGLATARGSATSGYVTKNRGYVPPRRIRQETALVSGRGGPQD-----TFKAAVLAKANQEILEHKRKRQIEAQVYELQENMRDQGYTDVEIEGKAKTLREQLERNTSALVPAKKKGGGAMTDTHEVAARKAEENEKLRHAFGIAKDHVEGETWDPEAR 158
            MYNGIGL T RGS T+GYV +N   +  +R R E      RGG +D       ++ +  + N +ILEH+RKRQ+E +  ELQ+ M +QGY+  EIE K  T R  L+       P  +K   A+T+TH +AA   ++N++LR AFGI+ D+V+G +++P+ +
Sbjct:    1 MYNGIGLTTPRGSGTNGYVQRNLSSIRVKRNRDE------RGGERDEKDKERLESQLNRQPNADILEHQRKRQLEVKCAELQDMMEEQGYSAEEIEEKVNTFRLMLQERQEPAPPPTEK--TAVTETHALAAANQQKNDRLRQAFGISSDYVDGSSFNPDRK 154
[Close]
BLAST of NO25G00650 vs. NCBI_GenBank
Match: AAI34027.1 (Srrm2 protein, partial [Danio rerio])

HSP 1 Score: 112.8 bits (281), Expect = 2.500e-21
Identity = 66/162 (40.74%), Postives = 99/162 (61.11%), Query Frame = 0 
Query:    1 MYNGIGLATARGSATSGYVTKNRGYVPPRRIRQETALVSGRGGPQD-----TFKAAVLAKANQEILEHKRKRQIEAQVYELQENMRDQGYTDVEIEGKAKTLREQLERNTSALVPAKKKGGGAMTDTHEVAARKAEENEKLRHAFGIAKDHVEGETWDPEAR 158
            MYNGIGL T RGS T+GYV +N   +  +R R E      RGG +D       ++ +  + N +ILEH+RKRQ+E +  ELQ+ M +QGY+  EIE K  T R  L+       P  +K   A+T+TH +AA   ++N++LR AFGI+ D+V+G +++P+ +
Sbjct:    1 MYNGIGLTTPRGSGTNGYVQRNLSSIRVKRNRDE------RGGERDEKDKERLESQLNRQPNADILEHQRKRQLEVKCAELQDMMEEQGYSAEEIEEKVNTFRLMLQERQEPAPPPTEK--TAVTETHALAAANQQKNDRLRQAFGISSDYVDGSSFNPDRK 154
[Close]
BLAST of NO25G00650 vs. NCBI_GenBank
Match: XP_021326390.1 (serine/arginine repetitive matrix 2 isoform X1 [Danio rerio])

HSP 1 Score: 112.8 bits (281), Expect = 2.500e-21
Identity = 66/162 (40.74%), Postives = 99/162 (61.11%), Query Frame = 0 
Query:    1 MYNGIGLATARGSATSGYVTKNRGYVPPRRIRQETALVSGRGGPQD-----TFKAAVLAKANQEILEHKRKRQIEAQVYELQENMRDQGYTDVEIEGKAKTLREQLERNTSALVPAKKKGGGAMTDTHEVAARKAEENEKLRHAFGIAKDHVEGETWDPEAR 158
            MYNGIGL T RGS T+GYV +N   +  +R R E      RGG +D       ++ +  + N +ILEH+RKRQ+E +  ELQ+ M +QGY+  EIE K  T R  L+       P  +K   A+T+TH +AA   ++N++LR AFGI+ D+V+G +++P+ +
Sbjct:    1 MYNGIGLTTPRGSGTNGYVQRNLSSIRVKRNRDE------RGGERDEKDKERLESQLNRQPNADILEHQRKRQLEVKCAELQDMMEEQGYSAEEIEEKVNTFRLMLQERQEPAPPPTEK--TAVTETHALAAANQQKNDRLRQAFGISSDYVDGSSFNPDRK 154
[Close]
BLAST of NO25G00650 vs. NCBI_GenBank
Match: XP_020622328.1 (serine/arginine repetitive matrix protein 2-like [Orbicella faveolata])

HSP 1 Score: 112.1 bits (279), Expect = 4.300e-21
Identity = 68/163 (41.72%), Postives = 94/163 (57.67%), Query Frame = 0 
Query:    1 MYNGIGLATARGSATSGYVTKNRGYVPPRRIRQETALVSGRGGPQDTFKAAVL--AKANQEILEHKRKRQIEAQVYELQENMRDQGYTDVEIEGKAKTLREQLERNTSALVPAKKKGGGAMTDTHEVAARKAEENEKLRHAFGIAKDHVEGETWDPEARDRRR 162
            MYN IGL TARGS T+GYV +N   +  R+ + E          +D  K   +   K NQEILEH+RKRQIE +  ELQ+ M +QGYTD EIE K + LR  L           K+G   +T+TH++A    E+N K++ A GI KD+ +G ++D E +  +R
Sbjct:    1 MYNNIGLQTARGSGTNGYVQRNLSLLRSRKEKVEYHT------NEDLAKLEQMNTKKPNQEILEHERKRQIELKCMELQDLMEEQGYTDSEIESKVEELRNILSEQAGIASKDNKEGKSTVTETHQMAEANEEKNAKMKEALGIKKDYKDGSSFDQELKAAQR 157
[Close]
BLAST of NO25G00650 vs. NCBI_GenBank
Match: XP_016092003.1 (PREDICTED: serine/arginine repetitive matrix protein 2-like isoform X1 [Sinocyclocheilus grahami] >XP_016092004.1 PREDICTED: serine/arginine repetitive matrix protein 2-like isoform X2 [Sinocyclocheilus grahami] >XP_016092007.1 PREDICTED: serine/arginine repetitive matrix protein 2-like isoform X5 [Sinocyclocheilus grahami])

HSP 1 Score: 111.3 bits (277), Expect = 7.300e-21
Identity = 66/162 (40.74%), Postives = 98/162 (60.49%), Query Frame = 0 
Query:    1 MYNGIGLATARGSATSGYVTKNRGYVPPRRIRQETALVSGRGGPQD-----TFKAAVLAKANQEILEHKRKRQIEAQVYELQENMRDQGYTDVEIEGKAKTLREQLERNTSALVPAKKKGGGAMTDTHEVAARKAEENEKLRHAFGIAKDHVEGETWDPEAR 158
            MYNGIGL T RGS T+GYV +N   V  +R R E      RGG +D       ++ +  + N +ILEH+RKRQ+E +  ELQ+ M +QGY+  EIE K  T R  L+       P  ++   A+T+TH +AA   ++N++LR AFGI+ D+V+G ++ P+ +
Sbjct:    1 MYNGIGLTTPRGSGTNGYVQRNLSSVRVKRNRDE------RGGERDEKDREKLESQLNRQPNADILEHQRKRQLEVKCAELQDMMEEQGYSAEEIEEKVNTFRLMLQERQEPAPPPTER--PAVTETHALAAANQQKNDRLREAFGISSDYVDGSSFHPDRK 154
The following BLAST results are available for this feature:
BLAST of NO25G00650 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21643.11.200e-6380.98mRNA splicing factor, Cwf21 [Nannochloropsis gadit... [more]
XP_017350656.11.900e-2139.88PREDICTED: serine/arginine repetitive matrix prote... [more]
AAH71371.12.500e-2140.74Srrm2 protein, partial [Danio rerio][more]
AAI24139.12.500e-2140.74Srrm2 protein, partial [Danio rerio][more]
NP_001025246.22.500e-2140.74serine/arginine repetitive matrix 2 [Danio rerio][more]
AAH95137.12.500e-2140.74Srrm2 protein [Danio rerio] >AAI65030.1 Srrm2 prot... [more]
AAI34027.12.500e-2140.74Srrm2 protein, partial [Danio rerio][more]
XP_021326390.12.500e-2140.74serine/arginine repetitive matrix 2 isoform X1 [Da... [more]
XP_020622328.14.300e-2141.72serine/arginine repetitive matrix protein 2-like [... [more]
XP_016092003.17.300e-2140.74PREDICTED: serine/arginine repetitive matrix prote... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL046nonsL046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL045nonsL045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR043ncniR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR074ngnoR074Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004367NSK004367Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G00650.1NO25G00650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632984gene_8550Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100012g73gene8845Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G00650.1NO25G00650.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G00650 ID=NO25G00650|Name=NO25G00650|organism=Nannochloropsis oceanica|type=gene|length=1266bp
ATGTACAACGGCATTGGGTTGGCGACCGCCCGTGGCTCGGCCACGAGTGG
ATATGTGACCAAGAATCGTGGGTATGTTCCTCCGCGGCGGATCAGGCAAG
AGACGGCCTTGGTGAGTGGGCGGGGAGGCCCTCAAGACACGTTTAAGGCT
GCTGTGCTAGCCAAGGCAAATCAGGAGATATTGGAGCACAAGCGCAAACG
GCAAATCGAGGCGCAAGTGTACGAGCTTCAAGAGAATATGCGAGATCAGG
GGTACACGGACGTGGAGATTGAGGGCAAGGCTAAGACATTACGAGAACAA
TTGGAGCGTAATACCTCGGCGTTGGTACCTGCGAAAAAAAAGGGTGGAGG
TGCCATGACAGACACCCATGAAGTAGCCGCACGCAAGGCGGAAGAGAATG
AGAAGCTGCGTCATGCGTTCGGCATTGCAAAGGACCATGTGGAAGGGGAG
ACTTGGGATCCGGAGGCCCGAGATAGACGGAGACAGGATAGGGATAAGGA
GAGGGCAGAGAAGAGGGAGAGGAGGGGGGCTGAGGAGAAGGAGCGGAAGG
AGCGCAGGGAGAGGTTCGAGAAGGAGGCAAAAGAGGAAGAGGAGAAGCGG
CGGGCGGAGGAGAATCGCCGTAGACTCGGCAGTGGGGGAGGCAGGGGGGG
CAAGCTGGGCTGGAAGAAAGAGGATGAAGAGGATGATAGGTGGCGGCCTG
AGAACGAGGGAGAGGAAGAAGAGTTTGAGGAGAAAGAAAAAGGTAGAAGT
GGGAGAGGGATGAAGAGACATTGGAAAGAGGATGATTTTGCAGGGAAGAA
TCGTAGCCGAAGCCGCAGTCGAGGAAGAGCACGACGAGGAGAAGGAAGGG
ATGGAGGGAAGGAAAGAGAGGTTGACAGACGCCAGGAGACGGCGGATGAG
AAGGGGAGAAAGGGGGAAAAGGCCATTGTTACCACCACCAGCAATAGCAG
CAGCAGCAACAGCAGCAGCATGGCGGTTGCTGGTCGCAAGAAGACGAAGG
ATGGCGGGAACGAGAGGGAGGAAGAGGGAAAGAAGAGACCACAAGGAGCA
GGCAGCACCAGAAGCAGCAGACGAGGCCATCGGTACTCCCGCAGCCTCAG
CAGCGACTCCTCATCCTCCTCATCCTCCTCATCTTCTTCTTCATCCTCAT
CTTCATCTTCGTTTTCTGATTCGAGCTCTTCGAGCAGCAGCAGCGGCAAT
TCCTCTTCGTCCTCGTCCTCTTCCTCAGGCTCTTCCTCCTCGTCTGATTC
GTCCGACTCCGAGTAG
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protein sequence of NO25G00650.1

>NO25G00650.1-protein ID=NO25G00650.1-protein|Name=NO25G00650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=422bp
MYNGIGLATARGSATSGYVTKNRGYVPPRRIRQETALVSGRGGPQDTFKA
AVLAKANQEILEHKRKRQIEAQVYELQENMRDQGYTDVEIEGKAKTLREQ
LERNTSALVPAKKKGGGAMTDTHEVAARKAEENEKLRHAFGIAKDHVEGE
TWDPEARDRRRQDRDKERAEKRERRGAEEKERKERRERFEKEAKEEEEKR
RAEENRRRLGSGGGRGGKLGWKKEDEEDDRWRPENEGEEEEFEEKEKGRS
GRGMKRHWKEDDFAGKNRSRSRSRGRARRGEGRDGGKEREVDRRQETADE
KGRKGEKAIVTTTSNSSSSNSSSMAVAGRKKTKDGGNEREEEGKKRPQGA
GSTRSSRRGHRYSRSLSSDSSSSSSSSSSSSSSSSSSFSDSSSSSSSSGN
SSSSSSSSSGSSSSSDSSDSE*
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Synonyms
Publications