NO25G00640, NO25G00640 (gene) Nannochloropsis oceanica

Overview
NameNO25G00640
Unique NameNO25G00640
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2147
Alignment locationchr25:178452..180598 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:178452..180598 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO25G00640 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL046nonsL046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL045nonsL045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR043ncniR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR074ngnoR074Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004368NSK004368Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G00640.1NO25G00640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603063gene_8549Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G00640.1NO25G00640.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G00640 ID=NO25G00640|Name=NO25G00640|organism=Nannochloropsis oceanica|type=gene|length=2147bp
ATGACTCCTCCCACATCTGGGACTAACCCCCCGAGGTCAATTCCTGTTCC
CGTCTCTTCGGTCTCCCCCAGCCCCTCCCGTGTTTCCTCAAACTGCCGCA
AGAGCACGCGCGGCCGCAATTGCGCCCGGACCATCTACGGGGGATATATA
ACTGAGCGTAGTGGCGCCAATCAATCATCTCACTGTACTGCCAAATCCAG
CTTATACCCGCCACAACGCACGACTTCCTGCCTGCGGTCCTCCTCCTGCT
CCTCCTCCTCCTCTCGGTCTAAATTTGATCCCGCCCGACTCGATTGCTTG
CGGCGGCACGAGAACCTACGACGGAAGCGCGAAGCGCAAATGCAAGTCAT
CCGAGCCAAAGAAGgtacgcccactctctaatctttttaatagaagcacg
cacgtgaatccatcccctcaaacacacacatcatagACTTGGCCAGGAAT
TTCAAAGCACGGCCCTTGCCGCCCATCCATCGCGGCGCTTCGTTCGTCGA
GCCCGACAAAAGCACTAACGACGTAGAAAAAAACTCCGCGATTTACATCC
GGCCCTTTATGTCCATGTCTAGCTCCAACAGCAGCATCGAAGACAGCACA
GAGGGAGGCTCTCCGTTCTCCTCTTATTCTCGCTATTGCACTACGGGCGC
GGGCTCCACATTTAGAACATCACCATGCAGGAAAGCCACTTCTCCGCGTG
CTACTGATTCTGGATTCTTATCTCCTCAGTGTCAAGATAACGATGATGAA
TTTGGAAGAAGCATATACATGCTCGAGGACGGCATTGGCCTGCTCCAGCG
GCAGAGGGAATGGGCTGATAGCCGAGAGCGGCGATTGGAGGCAGCCCGGG
TGGTCAAAGCTGTTGAGGAGGTGGCGgtatgtgcagatttgtgtctatgt
gcggtataagaactcgatttaccgctcgcatactcacgcacatacagGAG
GTTCGATCAATGCCTGACTTGTCTGAGGCCCGGTCAAGTTGGCTGAAGGC
TAAGGCCGAGCATAAGAGAGCACAACTCCGCGCTTTGGAGCAAGACAAAG
AGCGACAGGCTGTCGAGGTACTAAAGCAACAGGTGGTACTGAAGCGGCAC
CAAGGCATGCACAGACAAGGCGGGACGCGGCGGCTAAAGCAACAGGAAGA
AGTCCTGCAGCTGCCAAGCGCTCAGCCGTCTGAGAAGGGGCACAACCAGC
TCGAGCGCCGGAATCTGAGCCATGTCCCTCTCCGCCTTGTCTGCTCAACA
TCGATTGTTGATACCGgtgagatagagcgggggaaaggatggaaagagaa
gcgcgaccagacagactactatagcgaccaacatacaactgcacttactg
tcgccccgcgtgtcaatccacctctcttccacgccctactcgcaacatct
tcgcctgctccgagtacaagtctttgtcaaattgccaccccgaacagaca
catcgcagcttcctccttttcgatcacatcctgttccagggcacttgata
tgtaccgctcaccgaataagagacagtgctgctcgtccttgtcaccttca
tcatcaccactccgctgtggtcatcttactttctgcccacactcttggcc
tctcccttcaaaattcaccaaaacgaagggaggtaacagcaacggctcca
cggccacaccaatgccacaattaatcccacctcctcctcaacctcctatc
acttgtcaactgctttctaacagttcgtgggagaatgccgacgcgccatg
ggggagggatttgcccagcctggacctacttgacgatcatggcaagcttt
acaccgatggtagtcacgaagtggctagtttattgcacgatcatggcgct
tgggcagGTGACAGCGATGAGCAAGAAAATGATTCGGGCGATGTAGAATT
ACGCCGCTGGAGTAGTTGTGACAGTCCCAGCAGCCCCAGTAGTTCCAGCA
GCAGCAGGAGTAAGAGTAGAAGTAGGAGTAGGAGTAGTGGTAGTAGTAGC
AGCAGCATCAGCATCGGAGCGGACCTTGCCCGAAGCTGGAAGGTTAAACT
GGTTCAGGAGGAAGACGTTCTGCTGGCGCGCATGCTCAACAGTGGTGTGG
ACAAGGTGGGAGAAAGCAAGTGGGAAGAGAGGGAAAGACAGCACTGA
back to top

protein sequence of NO25G00640.1

>NO25G00640.1-protein ID=NO25G00640.1-protein|Name=NO25G00640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=471bp
MTPPTSGTNPPRSIPVPVSSVSPSPSRVSSNCRKSTRGRNCARTIYGGYI
TERSGANQSSHCTAKSSLYPPQRTTSCLRSSSCSSSSSRSKFDPARLDCL
RRHENLRRKREAQMQVIRAKEDLARNFKARPLPPIHRGASFVEPDKSTND
VEKNSAIYIRPFMSMSSSNSSIEDSTEGGSPFSSYSRYCTTGAGSTFRTS
PCRKATSPRATDSGFLSPQCQDNDDEFGRSIYMLEDGIGLLQRQREWADS
RERRLEAARVVKAVEEVAEVRSMPDLSEARSSWLKAKAEHKRAQLRALEQ
DKERQAVEVLKQQVVLKRHQGMHRQGGTRRLKQQEEVLQLPSAQPSEKGH
NQLERRNLSHVPLRLVCSTSIVDTGDSDEQENDSGDVELRRWSSCDSPSS
PSSSSSSRSKSRSRSRSSGSSSSSISIGADLARSWKVKLVQEEDVLLARM
LNSGVDKVGESKWEERERQH*
back to top
Synonyms
Publications