NO25G00580, NO25G00580 (gene) Nannochloropsis oceanica

Overview
NameNO25G00580
Unique NameNO25G00580
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length273
Alignment locationchr25:164865..165137 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:164865..165137 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO25G00580 vs. NCBI_GenBank
Match: EWM21567.1 (hypothetical protein Naga_100012g80 [Nannochloropsis gaditana])

HSP 1 Score: 93.6 bits (231), Expect = 3.400e-16
Identity = 43/65 (66.15%), Postives = 53/65 (81.54%), Query Frame = 0 
Query:   16 KTPKYKALLTGRFGRSLIVAEAMAFVGTGMLYYTLTTSEEAREKLTKRMPILMDVFHKVTQEKYK 81
            K P+Y+ALL  +FGR+L++AE     GTG+LYYTLTTSE+AR KL  RMP +MDVFHKVTQ+KYK
Sbjct:   13 KQPRYQALLNSKFGRALVLAEVATLAGTGVLYYTLTTSEDARNKLAYRMPWVMDVFHKVTQDKYK 77
The following BLAST results are available for this feature:
BLAST of NO25G00580 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21567.13.400e-1666.15hypothetical protein Naga_100012g80 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL046nonsL046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL045nonsL045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR043ncniR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR074ngnoR074Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G00580.1NO25G00580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100012g80gene8852Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G00580.1NO25G00580.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G00580 ID=NO25G00580|Name=NO25G00580|organism=Nannochloropsis oceanica|type=gene|length=273bp
ATGCCGCCACCACCACGACCGCCGCCTGCACAACAGCAAACCATCAAAAC
ACCCAAGTACAAGGCCTTACTGACGGGCCGCTTTGGGCGCTCCCTCATTG
TGGCTGAAGCGATGGCTTTCGTTGGTACGGGTATGCTGTACTACACACTG
ACCACGAGCGAGGAGGCACGGGAGAAGTTGACGAAACGCATGCCCATACT
GATGGATGTGTTTCACAAAGTGACCCAAGAGAAGTACAAAAACATTAAAG
GGGTGGGCTCAGAGCCTCAGTAA
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protein sequence of NO25G00580.1

>NO25G00580.1-protein ID=NO25G00580.1-protein|Name=NO25G00580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=91bp
MPPPPRPPPAQQQTIKTPKYKALLTGRFGRSLIVAEAMAFVGTGMLYYTL
TTSEEAREKLTKRMPILMDVFHKVTQEKYKNIKGVGSEPQ*
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Synonyms
Publications