NO25G00480, NO25G00480 (gene) Nannochloropsis oceanica

Overview
NameNO25G00480
Unique NameNO25G00480
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1546
Alignment locationchr25:138537..140082 +

Link to JBrowse

Properties
Property NameValue
DescriptionMitochondrial ribosomal protein l37
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:138537..140082 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013870Ribosomal_L37_mit
Homology
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BLAST of NO25G00480 vs. NCBI_GenBank
Match: EWM21566.1 (mitochondrial ribosomal protein l37 [Nannochloropsis gaditana])

HSP 1 Score: 151.0 bits (380), Expect = 3.200e-33
Identity = 70/77 (90.91%), Postives = 75/77 (97.40%), Query Frame = 0 
Query:   87 VGDASKVAPINIHKEGKDPPLLSDDQYPDWLFDIRPLTLPEYRKMDISKLPLKEQRRYWKLLNRQVIKEKNAAGQRL 164
            VGD SKVAPINI+KEGKDPPLL DDQYP+WLFDIRPLTLPEYRKMDI+KLPL+EQRRYWKLLNRQVIKEKNAAGQ+L
Sbjct:  126 VGDVSKVAPINIYKEGKDPPLLPDDQYPEWLFDIRPLTLPEYRKMDIAKLPLREQRRYWKLLNRQVIKEKNAAGQKL 202
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BLAST of NO25G00480 vs. NCBI_GenBank
Match: GAY01594.1 (Hypothetical protein PINS_009408 [Pythium insidiosum])

HSP 1 Score: 64.3 bits (155), Expect = 4.000e-7
Identity = 32/76 (42.11%), Postives = 47/76 (61.84%), Query Frame = 0 
Query:   87 VGDASKVAPINIHKEGKDPPLLSDDQYPDWLF---DIRPLTLPEYRKMDISKLPLKEQRRYWKLLNRQVIKEKNAA 160
            V D ++  P+NI+KEG  P L    +YP+WLF   D +P T+ E  +     L L++QRRY  L NR+++K+ NAA
Sbjct:   34 VVDLTRFVPVNIYKEGSHPELKDKSEYPEWLFKLLDEKP-TVGELERAGFDNLSLEDQRRYLTLTNRKIVKQNNAA 108
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BLAST of NO25G00480 vs. NCBI_GenBank
Match: XP_016182106.1 (54S ribosomal protein L37, mitochondrial [Arachis ipaensis])

HSP 1 Score: 63.2 bits (152), Expect = 8.900e-7
Identity = 36/72 (50.00%), Postives = 46/72 (63.89%), Query Frame = 0 
Query:   90 ASKVAPINIHKEGKDPPLLSDDQYPDWLF---DIRPLTLPEYRKMDISKLPLKEQRRYWKLLNRQVIKEKNA 159
            AS V   NI KEG DP +  D +YPDWL+   D RP  L E R+ DI+KLP ++ +R+ KL NR  IKE N+
Sbjct:   55 ASTVVGANILKEGTDPKIQPDSEYPDWLWHLLDKRP-ALSELRRKDINKLPYEDLKRFVKLDNRARIKENNS 125
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BLAST of NO25G00480 vs. NCBI_GenBank
Match: GAU35578.1 (hypothetical protein TSUD_295140 [Trifolium subterraneum])

HSP 1 Score: 63.2 bits (152), Expect = 8.900e-7
Identity = 37/72 (51.39%), Postives = 46/72 (63.89%), Query Frame = 0 
Query:   90 ASKVAPINIHKEGKDPPLLSDDQYPDWLF---DIRPLTLPEYRKMDISKLPLKEQRRYWKLLNRQVIKEKNA 159
            AS V   NI KEG DP +L D +YPDWL+   D RP  L E R+ DIS LP ++ +R+ KL NR  IKE N+
Sbjct:   78 ASTVVGGNILKEGTDPKILPDSEYPDWLWHLLDKRP-ALSELRRKDISTLPYEDLKRFVKLDNRARIKENNS 148
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BLAST of NO25G00480 vs. NCBI_GenBank
Match: PNX94241.1 (54s ribosomal protein mitochondrial-like [Trifolium pratense])

HSP 1 Score: 63.2 bits (152), Expect = 8.900e-7
Identity = 37/72 (51.39%), Postives = 45/72 (62.50%), Query Frame = 0 
Query:   90 ASKVAPINIHKEGKDPPLLSDDQYPDWLF---DIRPLTLPEYRKMDISKLPLKEQRRYWKLLNRQVIKEKNA 159
            AS V   NI KEG DP +L D +YPDWL+   D RP  L E R+ DI  LP ++ +RY KL NR  IKE N+
Sbjct:   56 ASTVVGGNILKEGTDPKILPDSEYPDWLWHLLDKRP-ALSELRRKDIGTLPYEDLKRYVKLDNRARIKENNS 126
The following BLAST results are available for this feature:
BLAST of NO25G00480 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
EWM21566.13.200e-3390.91mitochondrial ribosomal protein l37 [Nannochlorops... [more]
GAY01594.14.000e-742.11Hypothetical protein PINS_009408 [Pythium insidios... [more]
XP_016182106.18.900e-750.0054S ribosomal protein L37, mitochondrial [Arachis ... [more]
GAU35578.18.900e-751.39hypothetical protein TSUD_295140 [Trifolium subter... [more]
PNX94241.18.900e-751.3954s ribosomal protein mitochondrial-like [Trifoliu... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL046nonsL046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL045nonsL045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR043ncniR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR074ngnoR074Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004384NSK004384Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G00480.1NO25G00480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602992gene_8532Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100012g92gene8862Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G00480.1NO25G00480.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G00480 ID=NO25G00480|Name=NO25G00480|organism=Nannochloropsis oceanica|type=gene|length=1546bp
GGAACCGAGATAGACAGGTTTGTTGGTTGCAGGCAAGAAAATACCGATTT
TCCAGAACCAATTACTTTGCAGGCCAGGCCGTTGGCGTGACGGTGGCCAC
GCGATTTCATAACAGTACAGCCACACATCTTTTCTATTCCTGCGTCACAA
ACACGGCTACCTTGCCCTCCAGTGGACGAAGCATCCGTTCTTCATTCCGC
TTCAGCGAGGGAAATATGTATGATGGAACTAGGGGTCTCGAGTCTCAGTC
TCAGGCTTAGGCACAAACTATCGACTCCATACGACCACCGAGACATACAC
TCATTACGCATATTGAAAGAAGGTCGTAGCAATGGAAGTCTTCAAGCTAT
GTGTGTGGGGGACGTGGGGGAACCCCTCCGCAAGCGAAGCAAAACAAAGA
GCGTTGCCTCGTATCCTCTCATGCTGTTCTGGCGCTTAAGAGAGCCCAAC
GAAACACACGCTGTGCAAGGGGGCACAATTTGACCTCACAATACACGCAG
GCACAGGTAGTTATTGGATTGGATCCGCTCTCTCCGGCCTGCAATCACAC
ACCAGACATCCAGCCATGGCCTCGTCCTTTCACCGATGGGGGTGCCGGTG
CCTCCTCGCCTTGCAGCAACGCGCCGCCACGAGCACCGTCTCCACTTCCT
CCTCCATTTCTTTCTCATCCTCTTCGTCGTCGCGACCCGACGGTGTCGCT
GTCATGGCCTTGAGAAGAAGAATACCAGCCTCAACATTCTCCACCAAGGC
TCCCACGGCCAAGAAGGGCAAAAAAGGGGGAGACGAAGGCGGAGGCGGTG
GCGGTGCTGGCGCAGAGGCTCCCGTGGGGGATGCCAGCAAGGTTGCACCC
ATCAATATTCACAAGGAAGGCAAGGATCCACCGCTACTGTCCGACGACCA
ATACCCTGACTGGCTTTTCGACATTCGGgtgagataaagttaattaggcg
gtggaggcttgttgtgttgtgatttgtgcctgtcctgtttatctccttgg
tcatgtatactgatgtgtgagtgttttggggcggctcaactacaactgaa
caaactcagtaccatcaactcgcaaaatgtggtcgcgctggttcccttca
ttaaatggcagacagctccacgagatgaagactccggtttacaattttat
cttatctctctccttatctgtatcgagagaatttatttacattcatatat
ttcttcacccagcaatcttaaatctggcatgttctcacctgtttctattc
ctcattcccttccccccccacacacatagCCCCTGACCCTGCCCGAGTAC
CGCAAGATGGACATCTCCAAGTTGCCGCTCAAGGAGCAACGCCGGTACTG
GAAACTACTCAACCGGCAGGTTATCAAGGAGAAGAATGCAGCAGGCCAGA
GGCTGTAGTAGGGATGACAGTAGACAGAGGGCAGGCTCAGTGGGCGTGCG
TCGGATGCGGAAATTGGGTCGGTTTTGTTGTGCTGAGAGGGCTTGTCATG
AATCACGAAAAAATCAAAAAGCATGAAAATAATTTGCAAAATTCAT
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protein sequence of NO25G00480.1

>NO25G00480.1-protein ID=NO25G00480.1-protein|Name=NO25G00480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=164bp
MASSFHRWGCRCLLALQQRAATSTVSTSSSISFSSSSSSRPDGVAVMALR
RRIPASTFSTKAPTAKKGKKGGDEGGGGGGAGAEAPVGDASKVAPINIHK
EGKDPPLLSDDQYPDWLFDIRPLTLPEYRKMDISKLPLKEQRRYWKLLNR
QVIKEKNAAGQRL*
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Synonyms
Publications