NO25G00420, NO25G00420 (gene) Nannochloropsis oceanica

Overview
NameNO25G00420
Unique NameNO25G00420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length849
Alignment locationchr25:123336..124184 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:123336..124184 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO25G00420 vs. NCBI_GenBank
Match: XP_005852599.1 (hypothetical protein NGA_0711800 [Nannochloropsis gaditana CCMP526] >EKU23230.1 hypothetical protein NGA_0711800 [Nannochloropsis gaditana CCMP526] >EWM21559.1 hypothetical protein Naga_100559g3 [Nannochloropsis gaditana])

HSP 1 Score: 147.9 bits (372), Expect = 3.900e-32
Identity = 88/209 (42.11%), Postives = 132/209 (63.16%), Query Frame = 0 
Query:   31 ALFATPICRRCSSHRCFSSATASS-------PSLSSHTDTNTNAFAGLSRQDLKAYHALVRSAQVSVALQRGYQDGTCAATVEGSKELYKLLRDTRTRPSFLTPFASTLGIVLHYLPVPPGAGIGNVRQGLISSLQESYDCSVRQLIEIERAGKSK--APAAAVKRFIKSKRDSLGVEDDEGGTGASSGIVTQAIQLFSRILIRGATRV 231
            +L A     R    R F++ T SS       PS    ++    AF G SR+ L+ YHALVR A+V+ AL+ GYQDGTCA+ ++  +EL  LLR TR RPS LTP  S++GI+L +LP+P    +G+V  GL +SL+E+ D +VR+L+E+ERA  S+    A+A+KRF+K KRD LG++ ++ G+   +G++ Q  ++    L+ GA R+
Sbjct:    6 SLLAKASVHRPFGLRRFATETLSSFPSESTLPSSQQASEATQAAFTGQSRKQLQEYHALVRIAEVAEALRSGYQDGTCASPID--EELRSLLRATRARPSLLTPLGSSVGILLRHLPIPSNTIVGDVGIGLRASLKEALDSNVRRLVEVERARGSRGGTSASALKRFMKEKRDGLGMDGEDAGSEDGAGVLAQGTKVVCSALLWGAKRL 212
The following BLAST results are available for this feature:
BLAST of NO25G00420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852599.13.900e-3242.11hypothetical protein NGA_0711800 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL046nonsL046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL045nonsL045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR043ncniR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR074ngnoR074Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G00420.1NO25G00420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602971gene_8525Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100559g3gene8867Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G00420.1NO25G00420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G00420 ID=NO25G00420|Name=NO25G00420|organism=Nannochloropsis oceanica|type=gene|length=849bp
TGTACAGGGATGTAAGATCCGCTAAACGCATGCTATGATACATGTACGTA
GTTCACCATATGTCCAAACCACACATATAGCCCCTGCCTCACAACCCAGG
GAGCCGACGAAGAATTGACATGCAACGGTTTTTGTGCTTACCGCGCGCTC
ACACTCCCCACAATCTCAGGACAGTCAAGGCAAGGGATCGCGCCATGCTG
TTCATCCGCGCCCTCTTTGCCACGCCAATTTGCCGCCGCTGCTCCTCTCA
CCGCTGCTTTTCAAGCGCCACGGCATCTTCGCCCTCATTATCTTCCCACA
CCGACACCAACACAAATGCCTTTGCCGGCCTGTCCCGCCAAGATCTGAAG
GCATATCATGCGCTGGTACGGAGTGCTCAGGTTTCCGTTGCTTTGCAACG
GGGGTACCAAGATGGGACCTGTGCGGCGACTGTAGAAGGTAGTAAGGAAC
TCTACAAACTCTTGCGAGACACCCGGACGCGGCCTTCATTCCTCACCCCT
TTTGCAAGCACTCTGGGCATCGTCCTGCACTATTTGCCTGTTCCGCCTGG
CGCGGGCATTGGGAATGTGAGACAGGGTTTGATCTCATCCCTGCAAGAGT
CTTATGATTGCAGCGTCAGGCAATTGATAGAGATAGAACGTGCAGGAAAA
TCGAAAGCTCCGGCGGCCGCAGTGAAGCGCTTTATAAAGTCGAAACGAGA
TAGTCTTGGCGTGGAGGATGATGAGGGGGGGACAGGTGCAAGTAGCGGGA
TTGTGACACAAGCAATCCAATTATTCTCCCGAATATTAATCAGAGGGGCG
ACTCGTGTGTAGATCGACTGGAAAACAGCGGAAAATTAACAAGAATGGA
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protein sequence of NO25G00420.1

>NO25G00420.1-protein ID=NO25G00420.1-protein|Name=NO25G00420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=231bp
MQRFLCLPRAHTPHNLRTVKARDRAMLFIRALFATPICRRCSSHRCFSSA
TASSPSLSSHTDTNTNAFAGLSRQDLKAYHALVRSAQVSVALQRGYQDGT
CAATVEGSKELYKLLRDTRTRPSFLTPFASTLGIVLHYLPVPPGAGIGNV
RQGLISSLQESYDCSVRQLIEIERAGKSKAPAAAVKRFIKSKRDSLGVED
DEGGTGASSGIVTQAIQLFSRILIRGATRV*
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Synonyms
Publications