NO25G00280, NO25G00280 (gene) Nannochloropsis oceanica

Overview
NameNO25G00280
Unique NameNO25G00280
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4254
Alignment locationchr25:83835..88088 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:83835..88088 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO25G00280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR043ncniR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G00280.1NO25G00280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO25G00280.2NO25G00280.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602898gene_8511Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G00280.1NO25G00280.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO25G00280.2NO25G00280.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G00280 ID=NO25G00280|Name=NO25G00280|organism=Nannochloropsis oceanica|type=gene|length=4254bp
CACCACTCTTGTATTGTATACACGCCTCGTTCTCGAATGCGAAATTGCTC
ATAAATAGATATCCTTAGTAGCGAGCAATAACGTCCGTGCTCCCTTCGCG
GGAGGCGCACTGACCTCACCAATCCAGCGTGACGTCTCATCAATGGTCCC
CTTGGTCTCACATGAGACCTCATGACCCCCCACTCAAACCGTTACAATGG
TCGTCTGGCGAATGGGCAAACGCCGCCTCACCCAACCACCACACTCATCC
GACCATCACGGCCACAAAGCCGCCCCACCACAAAAAGCCACATAATGGTA
CACTATGATGCACAGTAAAAGCGTGCACATACAACAAATTAGCCACCCCA
CAAACCCCCGCTCTCTTCCTTTCCCCCCATTTAAACGCCAGTTTGGACCC
CCGTGTCACACCGCTCAGCCCACAATTCCTCCTTGGGGATAAGAGGTAGA
GCACCATCTCAGAGGATGACCACAAAAATCCCACTAAATTAGAGCCTGGA
TGCCAAGCCCCACGGTTGTTTTCGGGAATGACAAGCGACTAACACGCTGG
ACCCCTACACGGCGGGGGTGGTCGCTTCTTCCACTTAATGCGCTCACAAA
AACGATCCCACTCATGTACTACTTTGACAAAACAGCCATCATGCAGGCCC
CCAACAAGGAGAATGTAGCAGCCTCTGTCGCAGAGACGGCAGCCTCGCGC
CTCACTCTCATTGAGAGCCACAAGCACAACAAGAAGGGCGGCACTACTAC
CACAGTAGCAAGCGCAGCGGCCCCTCCTGCATCGACGAGTGAGATGATGG
GGCGCGAGATGAAGGCCACTACACGCGGGGGCATGACAGCTCCCACGGCC
AGCAGCATGAAAAAGCAAATTATGCGTTCTCCTACCACAACCCCCTTGGC
CATGCATTGCCCTATCAGCAGCTTCAACAGTCGGACGACGACTATGGCGA
CCACCACCTCGAAGAACACCGCGTATGTCAAATCCCAAGTCTCTGCGGCC
TTCGCCTCTTCGTCCTCCTCCTCATTCTCCTTGTCCTCTTTTTCTCACAC
TGGCCCTCTCTCGTCCTCGTCCTCGTTCTCCACCTCCACCACCCTGGCTG
CCGCCGTTGAAGAAGCGCGGCAGCTGATGGACTTGGGGTGCCATGGAGCG
GCCCGCACCTTGTTGACGGAGCTTGGGAAACGCCAGCCCATTCACAAGGG
CAAGGCTATGTACTGGTTGGCGCGGGCTGAGGTGGAGGAAGCGGAAGGAG
CCTGGACGGATGCGGCAAGGGTGTGGGAAGAGGGCATGAGGGGAGTGAAG
CTCGGCGGTGCGAGGGAGGAGAGGGTCTTGCAGGAGGGGAGGGAAAAGGC
GGTGGAACGTCTGAAGGAACGGGAGGAGGAAGAAGTGGAGAAGGAGGAGG
AGGACGTGGAGGAGGAGGACGTGGAGGAGGAGGACGTGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTCGAGACCATATGTGC
CTCTTCTCTCACCACAGTCTTCTCTGGTCGGATTCCGCCCGACATGTCGG
CGCATGATGGCGACGATACGGACGAGTTGACGAAGGAAGACAAGGGAGAA
GGAGGGGGGGTGGACGCACTCGTGACGCGAGACTTGTTTGGAAGAGAGGC
GGAGCCGGCGCAACGCCAGCAGCAGGAGCGGCAGCAACAGCAGCATGACG
ACAAGGCCAAACGGGCCAGCTTGCTGCGAGCGGCCAATCATCGCTTGGCA
TCCTCCCCTTCCACTACAGCTGCCACGGACCCTATGCCCCCTCCTCCTCG
TCGAACCGCCCCTTCCTCCCTCCCTTCCTCCGCCGCTCCCTCCTCATACG
CTTCCCCTGCCAAGCGTACCCCTCCGCCTTCGGCTTCGACTGCAGCACCC
TTCATGAGCCCCCTCTCCACAGGGGCCCGGCGTGTCTCCCTCCTTGTGCA
GCGGCGACAGGAGGAGGAGGGAGGGGGGGAGGAAGGGCAGGCGCCCTCTT
CTGCTCGGCGTCGATCGCTGTTGATGTCTCCCACAGCCATCCTCAAGAGT
GGGGGGGCGAGGCGGGTGGTGGCCTTGCCCATGGAGGGGGTGGGAGAGGT
AAGAGTCGAGGGGGAGGAGGAAGAGGAGGAAGAGGGGGAGGATGGGAGGA
TGGAGTTGTTTGCGAGGGAGGGTGACGGTTATAGGGCGGGTTCGTCGCCA
ATGGAGGACGAGGGTGACAAGGGTGGTGAGGAGGGCCATTGGGAAGGCTA
CAGCAAGCAGATGCAGGACAGGGAGAGACAGGAAGAGGGGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGCGACTGGTCTCTC
TTGGGCTCGGCGCGGAAGGCCAAGGACAGCACCAATACTATCACTGCCAC
CCTGCCCAGCCGCAGCGGTGGTAGCACCAGCACCAGCAGTAACAATAAGC
AGTATCCAGACATGCCTCCTCCGCCTCCTCCTGCCCGCTCCCTTGGCCGT
GGCCCATGGCGTTCTTCTATGGCTGCGGGGGCGGCTCGGCTGAGGATGAC
GGCGATGCCTGCACGTGTCTCGACTGATCAGCAGCAGCTGCAGCAGCAGC
AGCAGTATGAGGAGGAGGAGGAGGAGGAGGATCGCGACGGTAGCGATGGC
GGGTTTGAGGACGTCGAGAACGGCCAGAGCGGTGACCACCACGATGGCGG
TTTCGCGGCAGCTGGAGCTGGAACGAAGgcaagtctcggagagatggatc
tttatctcacaccgagttatcaaccggtctactcggccctgtggctgcat
acatacacatgcatttattcacctcttcccccttacccccccctcccttc
tctccctcggcagTCCTCTCCTGGCGTCTGCCCTGCCATGGAACTGGACG
CGACCTCGGGCCAACGCAAGGGCACCCCGATGCCCAACAAGAAGAAGACC
AAGAGTTGCACCCCTTCCTCTCCCTCGGTCTCCTCCCCTGCCGGTGGCGG
CGGGTCGTTTTTGCTGGAAGTCTCTCGCTTTAACGGCGACGGGACCCGCT
CCACCTCCACACCCATCCGTCGGTATGTTCCCCCTTCGCTCCCTCCTTCC
CTAAGCCCCCGCTTCCATGTAATTGAACCTGTCCCTCTTTCCCTTCCTCC
CCTGCTCCTTCCCTCCCTCTTATCAGGTCCAGTCGCATCCTCCTCGGCGG
TCATGGGAAAGACCAGCCCACGCCCTCCCCCCTCCGTCGGGACATGGAGC
GCCTCTTGTCGCTGGCGAGCAACAGCGCGGTGTGGGGCCTGGGGAATGAA
TGTTAGATAGGCAGATAGACAGTGGCAGCAGCAGCAGCAGTGGTGGAGGT
AAGGGCAGGGTGTTGATGCGTCTTGCGTCGGGACATGGGGCGGCAGACAC
AGGGAAACAGGAGGCAGAGGGAAACAGAGGAGGCAGAGGGAAACAGAGGA
GGCAGAGAGAGACAAAGCAATGTCAGGGGCTGGGCTGAATGCTGGGAAAG
GAGCGCTGGGAGTGGTCATAGAGGAGGGAGGGAGGGAGGGAGGATGAGGA
AGAGAAATCGGAAGCGTTGAAGTCCGCGTTGGAGAGGGTGCGGTGGCGGG
GACGCAGACTCACACACTCACTCACTCACTCACGTGGTGGAGGGGGCACT
CGCTGGCGTCTTGAAAACAGCACGCTTGGGAGCTGGCGTTCGGAGAGGAG
GGCCGGGGGAGGGAGGGAGGGAAGGAGAAAGGGAGGGAGGGAGGGATGAG
GGAGAACGGGAGGGAGGGAAGGAAGAGGGAGAGGGTGTATGTATAGATTT
GGAAAAATATGACGACAAGTTGTTCGATATTGATGAGACAGCAGCAGCTG
AAAAAGAATAAGAAGAAGAAGGAGAAGCAGCAGCAGAAGAAGCAGCTGAA
GAAGCAAAACGAAAATAGAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGGA
GAAAGGGAAGAAGAAAATGCAGAAGTAGAAGAGGAAGAAGGAGGAGAAGA
ATAACAGGAAAAATGCGGGAAATAGGGAGGGATACAGCACAACAATTACG
AGATGGATGACGGCGCCAAAACGATGGAAAAGAAGGGAAGTGAGAGAAAG
CAGATGCACAGCTAGAAGGGAGACAGACGGGAAAGGAAAGAGAGAGTCGA
GATCATGGGCAGATCAAAGCGGGGGTGGGGAGTGTGGGCACATTCAATCC
GACCCCCCCGAGAAGAAGAAACATGACCCCACCCGGGCCAGCCACTCTCC
TCCC
back to top

protein sequence of NO25G00280.1

>NO25G00280.1-protein ID=NO25G00280.1-protein|Name=NO25G00280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=856bp
MPSPTVVFGNDKRLTRWTPTRRGWSLLPLNALTKTIPLMYYFDKTAIMQA
PNKENVAASVAETAASRLTLIESHKHNKKGGTTTTVASAAAPPASTSEMM
GREMKATTRGGMTAPTASSMKKQIMRSPTTTPLAMHCPISSFNSRTTTMA
TTTSKNTAYVKSQVSAAFASSSSSSFSLSSFSHTGPLSSSSSFSTSTTLA
AAVEEARQLMDLGCHGAARTLLTELGKRQPIHKGKAMYWLARAEVEEAEG
AWTDAARVWEEGMRGVKLGGAREERVLQEGREKAVERLKEREEEEVEKEE
EDVEEEDVEEEDVEEEEEEEEEEEEEEEVETICASSLTTVFSGRIPPDMS
AHDGDDTDELTKEDKGEGGGVDALVTRDLFGREAEPAQRQQQERQQQQHD
DKAKRASLLRAANHRLASSPSTTAATDPMPPPPRRTAPSSLPSSAAPSSY
ASPAKRTPPPSASTAAPFMSPLSTGARRVSLLVQRRQEEEGGGEEGQAPS
SARRRSLLMSPTAILKSGGARRVVALPMEGVGEVRVEGEEEEEEEGEDGR
MELFAREGDGYRAGSSPMEDEGDKGGEEGHWEGYSKQMQDRERQEEGEEE
EEEEEEEEEEEEGDWSLLGSARKAKDSTNTITATLPSRSGGSTSTSSNNK
QYPDMPPPPPPARSLGRGPWRSSMAAGAARLRMTAMPARVSTDQQQLQQQ
QQYEEEEEEEDRDGSDGGFEDVENGQSGDHHDGGFAAAGAGTKSSPGVCP
AMELDATSGQRKGTPMPNKKKTKSCTPSSPSVSSPAGGGGSFLLEVSRFN
GDGTRSTSTPIRRSSRILLGGHGKDQPTPSPLRRDMERLLSLASNSAVWG
LGNEC*
back to top

protein sequence of NO25G00280.2

>NO25G00280.2-protein ID=NO25G00280.2-protein|Name=NO25G00280.2|organism=Nannochloropsis oceanica|type=polypeptide|length=892bp
MPSPTVVFGNDKRLTRWTPTRRGWSLLPLNALTKTIPLMYYFDKTAIMQA
PNKENVAASVAETAASRLTLIESHKHNKKGGTTTTVASAAAPPASTSEMM
GREMKATTRGGMTAPTASSMKKQIMRSPTTTPLAMHCPISSFNSRTTTMA
TTTSKNTAYVKSQVSAAFASSSSSSFSLSSFSHTGPLSSSSSFSTSTTLA
AAVEEARQLMDLGCHGAARTLLTELGKRQPIHKGKAMYWLARAEVEEAEG
AWTDAARVWEEGMRGVKLGGAREERVLQEGREKAVERLKEREEEEVEKEE
EDVEEEDVEEEDVEEEEEEEEEEEEEEEVETICASSLTTVFSGRIPPDMS
AHDGDDTDELTKEDKGEGGGVDALVTRDLFGREAEPAQRQQQERQQQQHD
DKAKRASLLRAANHRLASSPSTTAATDPMPPPPRRTAPSSLPSSAAPSSY
ASPAKRTPPPSASTAAPFMSPLSTGARRVSLLVQRRQEEEGGGEEGQAPS
SARRRSLLMSPTAILKSGGARRVVALPMEGVGEVRVEGEEEEEEEGEDGR
MELFAREGDGYRAGSSPMEDEGDKGGEEGHWEGYSKQMQDRERQEEGEEE
EEEEEEEEEEEEGDWSLLGSARKAKDSTNTITATLPSRSGGSTSTSSNNK
QYPDMPPPPPPARSLGRGPWRSSMAAGAARLRMTAMPARVSTDQQQLQQQ
QQYEEEEEEEDRDGSDGGFEDVENGQSGDHHDGGFAAAGAGTKSSPGVCP
AMELDATSGQRKGTPMPNKKKTKSCTPSSPSVSSPAGGGGSFLLEVSRFN
GDGTRSTSTPIRRYVPPSLPPSLSPRFHVIEPVPLSLPPLLLPSLLSGPV
ASSSAVMGKTSPRPPPSVGTWSASCRWRATARCGAWGMNVR*
back to top
Synonyms
Publications