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Properties
| Property Name | Value |
|---|
| Description | Pentatricopeptide repeat-containing protein |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr25 | genome | chr25:77470..83538 - |
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO25G00260 vs. NCBI_GenBank
Match: XP_005853707.1 (hypothetical protein NGA_0493600 [Nannochloropsis gaditana CCMP526] >EKU22652.1 hypothetical protein NGA_0493600 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 187.2 bits (474), Expect = 2.200e-43 Identity = 117/190 (61.58%), Postives = 135/190 (71.05%), Query Frame = 0
Query: 3 GRIGRQIS-LLFLFVLAGVARAFFLGGHKATPAAIGGGGFLPSSGPVQAWTTTSLSSSAVYTSSSLYAAVGSVMEKPVKMPETDSGENKKVFERLFVQLSKETSEIPQASLDEALALAARGRSWSRAMKLLRLPTARPTRDQYHMAIVACKRAQHKWRQALELIDEAVARGLQPNATSFQEVMSICAVAQ 192
GRI +S LL L +L VARAF G TPA +P G A +++S + YA +VME+P + PETDS ENKKVFERLFV+LSK SE +LDEALALAARGRSWSRAMKLLRLPTARPT +QYHMAIVACKRAQHKWRQALEL+DEA+A GL+PN T+FQEVM+IC AQ
Sbjct: 2 GRIRGHVSFLLPLLLLLPVARAFL--GRGLTPARAS----IPLGGGCNARQASAVSPA--------YAMSANVMERP-RSPETDSKENKKVFERLFVELSKSPSE----ALDEALALAARGRSWSRAMKLLRLPTARPTSEQYHMAIVACKRAQHKWRQALELLDEAIALGLRPNVTTFQEVMTICIHAQ 172
BLAST of NO25G00260 vs. NCBI_GenBank
Match: EWM21539.1 (hypothetical protein Naga_101231g1 [Nannochloropsis gaditana]) HSP 1 Score: 149.4 bits (376), Expect = 5.000e-32 Identity = 95/157 (60.51%), Postives = 108/157 (68.79%), Query Frame = 0
Query: 3 GRIGRQIS-LLFLFVLAGVARAFFLGGHKATPAAIGGGGFLPSSGPVQAWTTTSLSSSAVYTSSSLYAAVGSVMEKPVKMPETDSGENKKVFERLFVQLSKETSEIPQASLDEALALAARGRSWSRAMKLLRLPTARPTRDQYHMAIVACKRAQHKW 159
GRI +S LL L +L VARAF G TPA +P G A +++S + YA +VME+P + PETDS ENKKVFERLFV+LSK SEIP +LDEALALAARGRSWSRAMKLLRLPTARPT +QYHMAIVACKRAQHKW
Sbjct: 8 GRIRGHVSFLLPLLLLLPVARAFL--GRGLTPARAS----IPLGGGCNARQASAVSPA--------YAMSANVMERP-RSPETDSKENKKVFERLFVELSKSPSEIPPQALDEALALAARGRSWSRAMKLLRLPTARPTSEQYHMAIVACKRAQHKW 149
BLAST of NO25G00260 vs. NCBI_GenBank
Match: EWM21535.1 (hypothetical protein Naga_101422g1 [Nannochloropsis gaditana]) HSP 1 Score: 97.8 bits (242), Expect = 1.700e-16 Identity = 52/87 (59.77%), Postives = 63/87 (72.41%), Query Frame = 0
Query: 765 MAALAATGVAEREAEAASLFARQQPPSSEGFRLALTCLCRGGRYKEALGLLPALGETCNVDPSDNLLKAAMKAALGMGTKESLPALR 852
M LA +G E EA SLF+RQ PP++EGFR+AL L R GR+ EAL LL +G TCNVDP D LLKA MKAA+G+G +E+LP LR
Sbjct: 1 MVTLAESGRPGWEMEAVSLFSRQNPPTAEGFRVALRGLYRAGRHAEALRLLATVGATCNVDPDDGLLKAGMKAAMGLGEEEALPLLR 87
The following BLAST results are available for this feature:
Relationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO25G00260 ID=NO25G00260|Name=NO25G00260|organism=Nannochloropsis oceanica|type=gene|length=6069bp
ATTACAGCGCTATGGATAATGGATAGGACCAGCCTGGGTGGGGAGGCTCA
ACAAGATGCCGCGGTAGCAACACATTTGGGCTCGTCCTCTACCGCGCTCA
CTCCGGGAGCCACCAGGAACGACTCAATCGACCTTGTTATCTTGCGGAAA
AGAAAATCTGCACCCCCAAAATTCTGAACTATAGGTTCAAAAGATTTTCA
CCGACGCAGCTTCTCGAGCTCTCTTGCGCAGTGACTTGTTTGACCATTCA
GGCGCAGCTGCCGGACAGTTTCGTGGAGAACCCTGTCTTTGTTGAATTCT
GCAGTTTTATCACCGGTGGGCAGCTCGCATCCAACAGCAGGAGAACAAAT
GGCAGGCACTACAAGCGTATGTATGCCATTATGATAGAAGATTTGTGAGC
GCTGGTTATCCAGAGTGGCCCGACCATTCTCTACAGTATATGTGTGTGAC
ATTTGGTCCAGCCGTGTCAAGGACGCTTTCATGGTAATTTTGATCACCTA
CATTGGAGAGGACTATAAGTACTATGAGATCACAATGGGTTGCATCTTTA
TGCCTGGAAAGCATACCGCGGTGGCGATCGAAGAGAGTCCGAGCACTTCA
TATTTCATCCCAAAAAGTGCGGCTATAGCTTCCTCTTGGCCTTTGGAGCC
ACATACTCCAAGGAGAACCAACAAAACTTTTTTCTTCGTGACTTATTCTA
ACATTTGTCTTTCTCTTTGTGCGCTCGCGCACGTGCAATCTAGGTGCACG
TGGCACATGCCCAGCCCTGCCCTCCATGCGCTGGTAAGAAGAGCACCACA
GCTGGGGTTTGGCAGCAGCAGTGGCGATGCGAAAAGCAGAATAGAAAAAT
AGAAGAGAACGAGGAAAGGAAGCGAGCTTGCATGCACTCATCTGTTTTTA
TATTAAAATTCGCACGATGTGAGTGACACGTGTCCCGAGACGTCTGAGGT
GGTCGGGCCGTGTGATGATCGGTATAGATCAGGTTAGAGGTCTGTGTGAT
GAACACAGTGCCTCCGCCTCCTCCTCCTCCATCTCCTCCGCCTCCTCCGC
CTCCTCCTCCTCTGCTTCAACAGCCTCCATCTCCTCCATCTCTTGATGGC
AAGGGAAGTCCGACATACCCTTGGGCTCCAGCCGCGGTGATCCTCCCGTA
CGGGGCAGAGATCTGACCACGCAGGATCACATCCCGAAAGAAGCCTCCCT
CATCAGTTATGGCAGCGACACTCATAAATGAGTGGAAGCCCTTCGTAATA
GAGAGGGCCATGACCGCCCCCCTCTATTCAGATGATACTTGTGGAGCAGT
ATACGCAGCGCTTGGACTGCCTCGAATGCAGCGTCAGCCCCTCCGCGGTT
GAGCAAGACGACGATGGGCGCGAGTTTGCCTTCGATTCTCATGTCCGTGT
ATACGATTACCCCCTCGCAGCTGAACCATCATGGAAAACACGGCACCATC
GTCGGTGCTGTACACATTGCGAGTGATAAACAGGGTCTTGCCCGTCCATG
CTGCCTCCTATACGGCAATACATCTAACTGCAAAAGGATTGTCACCGCGA
AATGTAGCGGCGAAAATATCACCTGAGACCGAGTACCGAGCGATTGCGGC
AGCGAGTGTGTACCCACTGGCACTCTGGTCTATAAATGGAAAGTTCTGTT
GTACTGGCCGAACAGGCATACCAAAAGTCTTGACGTTGTCCACACGCGCG
GGCAGGATGCTGGGAAAGTCATCCTCAAGAGGAGCGATGAAACAGGTTAT
TACTCTGACGCTGATGTCAGCTTTGTCACCGATGGTGCACATTGACGTGA
GCGAACTAAAATATTGGTGGAATTGGCCAGGTGTCGTTTCATTTCACCTA
GCCGGTGGTTTACCACCGACAACATGAGCCAAAGGAAAGAAAAAAACGCC
ATCATTATGATCGTGCTCCTCCTTCTGCTGCTGCTGCTGCTGCTGCTGTT
GCTGCTGCTGCTGCTTTCGCTGGTTCTCGGGGGCCTGCATGGTAGCTGTT
TTGTCTAGTGTAGTGTAACGATGGGGTCATATAAGTGAGCGCATCAGGTG
GAAGGGGCAACCAACCCCTTTTTGTTGGGGTCAACTTGAATTGAATGCTT
GTTATTCCCAAGAAAAATCGTGGTGTGTGTGACAGGTTTTTGTTTCATGG
AGAGATAATGCTCTATCGTTTGTCCCCAAGGGAAAACTGCAGGCTGAGCA
GTGTGACATAAGGGCCCACTAGATCCGGAAAACATATTTACAAGGCTTAG
ACTTTTGTGTAAAGAGATGCCTTGCCATATGTGCCTGCCTCTTCGCCGGG
CTCTGACCGATCCGACGAAGGAATGAACGATGACGACTGCGCCACTGCCA
GGTCATACCTTTCTACGCCTCGACCGTGTGTCCCATACCAAGCATTTGCC
ATCCAAGTCAGTCCCCTCGCATCCTGGCAAATGAGTGCCTACATATTGCC
TCAAGgtacttttgttgcgggcttaacccctcctttctttacaacaaacg
cttggttagacgcggaccaatatccgcctcaccatcatccatgtcgatcc
ccgcccatacccatcctacaacacaccccacactcccctttacatgcagT
GCACCATGACCGGCCGCATAGGGCGGCAAATTTCTCTTTTATTTCTTTTC
GTCCTTGCTGGCGTAGCCCGTGCCTTCTTCTTGGGCGGGCACAAGGCAAC
TCCAGCAGCAATTGGGGGAGGAGGTTTCTTGCCATCCTCAGGGCCTGTTC
AGGCATGGACCACCACCTCCCTGTCCTCCTCTGCCGTATACACCAGCAGC
TCGTTGTACGCCGCAGTGGGAAGCGTGATGGAGAAGCCCGTCAAGATGCC
TGAGACGGACAGCGGGGAGAACAAGAAGGTCTTTGAGCGGCTCTTTGTCC
AACTCAGCAAGGAAACGAGCGAGgtaggttttccggcctctatgtatgtg
atatgtgaggtgatctgatcttgctgtcactacgcgtgtctcatttttct
gtcttccttgtcccccatggccgctttgttgatcgacctttccgcctatt
tctcaacttaatccatcacccccccccccacccctatcccctctcctgcc
ttcctcccttatcagATCCCCCAAGCTTCTCTCGACGAGGCTCTGGCCCT
GGCTGCCCGCGGTCGTAGCTGGAGCCGTGCCATGAAACTATTGCGGTTGC
CGACAGCAAGGCCCACAAGAGATCAGTACCACATGGCGATCGTGGCGTGT
AAACGGGCGCAGCACAAATGgtagggagggaggaagggagggagggaggg
agggagggaggaagggaggatggagggagatggacgcagtcaattaacct
gagcatatttctctcctgctttacatatcttaattcacatgtctcctccc
ctcctttcctcccctccctccctccctttctttccccccccagGCGCCAA
GCCCTGGAGCTGATCGACGAGGCCGTGGCCCGGGGTCTGCAGCCCAACGC
CACCTCCTTCCAAGAGGTCATGTCCATCTGCGCTGTCGCCCAGCGCCCCA
AGGAAGCCGTCTCCGTCCTGGACCGGATGGGGAAGGCGGGGGTGAACGCC
GGCCTCTCGAGCTACAACATCGCCGTGTCGGCGCTCGCTCATCAGGGCCA
GTGGAAGAAGGCTCTCAAGATCATCACCTACATGGAGAAGCAGGCCGTGT
GGCCCGACACCAAGACCTACACCTCCGCAATGGAAGCCTGCGCCAAGGCC
GGCGAGTGGCAACGGGCTCTGCTTCTGCTAGAGGAGATGGTGGCGCAGAA
GGGGGTCCCTCCCTCCACCCCTACCTACAACGCCGCCATGCGCGCGTGTG
TAGTGGGCGGACAGGACGACCGAGCCCTGGCCTTCCTGGACGAGATGCTG
CGAAAAGGCGTGGGGGTGGACGAGGACTCCTTCGGCATCGCCATCAAGGC
CTGCGAGGGGGCCAAGAGGAAGGACAAGGCGCTCGAGCTCTGGCAGGAGG
AGATGCCCCGTCAATCTCTCCCTCCTTCCCTCCCTCCCCTCGAGGCCCTT
CTCCGCGTGCTGGTCAAGACGGAGAGGGAAGTGGAGTCCTGGCCGGCGGC
CTGTGCGATCATTGATGCCCTCCCTCCCTCGTCCCCGTCCTCCTCCTCGC
CCTCGCTCACCCAAGCAGACGGTGCCATGGCCCTGGTCAGGGCGGCGAGA
AGCTTGCAGTTGCCGGCGGAAGGACCGGGGGAAGAAGGGGTGGTTGGGAA
GTATGTGGTTGGAAAGCTATTGGCAGCAGGGAGGGTGGGGGAAGCGgtgc
gcctgtgctcggaggaggaccgactgggcttcgcggtcatgagggaggga
ggcagggaggggggagcgaggagagcgtggcgtgtttgggggtgttgttg
cagTGGAGGGAGGCGGTGAGGATGAGACAGGGGGCGGGGCCGTGCGCGAA
ACCGGACCTGGTGCGAACGAGGCTGGAAATGGAGATGAAGGAGTCGGGGG
TGCTGGGGAAGGAGGACGAGGAGATGAACGCCGTCAAGGCCCTGTGCGAG
GACGGGGAGCTGGACGCGGCGATCGAGAGGATCCGGAGTAAGGGCGGCAA
GCCCAGGCCGAGCGTGGTGAACTTGGCCATGGAATACGCCGTCGTCATCT
TCAAGGACGTGGCCGgtgcgtctgcctctccctttgatgtcgtgattatt
ttgagtgaatctgtgtgtatgagtgtgtgtttgagtgttttcattcataa
ttttttccttccttatgtcctttaaaaaggctcttttatgtcatgcgcac
ctcttccctccctcgctctctcctgcccaatttcccttcccccctctctt
cctcgccctccagaaagatacaaatatataatacgaaacattcactcctc
tcttctctcttcctctccctccctccttctcgccagCTGCCAAGAAGATT
TTGGAAATCCCGGGGGCCGGCTCCCGTCCCTTCTACAACAGGGCCTTGCG
GGTCGCGGCGGCGGCCAAGCGTTGGGGAACGGTGGCCTCGCTGCAGAAGA
AAATGACAATGAATGGGATTGTGTCCGATGCCGAGACGTTCCTGCAGCTG
ATTGTGGGAAGTACTGAGGCTGAGAGCTTGACGCGGGTGCAGAGgtaaaa
agagagggagggaaggaatggaaggaagggagggagggagggaaaggagg
gacctcgtttttatgaccatagtttttcattgctcctccctcgtatatct
ctctcctctctcttttttcacagATACCACCACCAAATGGAAAAGGAGGG
CTTTGCCACCGAGCCCGCCCATGCCGTGGCCCTTATGGCCTTCTACAACG
ACAAACGCAAGTACTCCCTCTCCCTGGCCGTGTTCCAGGAGCAGGTAGCG
AGGAACAGCGAGGCAGGGGGGGAGCAGCGGGAGGAGATGACGAGGCTGGC
GCTGGAGGCATGTGCCATAGGGGGCCTGTGGGAGGAAGTCCAGGAGATCG
CCGCAGCCGCACGTCTGTCGGTAGAGGAGGATGCCGCAGCCCGCACGGCG
CTGTTGGAGGCCATGGCGCGCGCGGGGGGTATGGTTGGGGAGGTGGAGAA
GAGGGTGCGCGGGCTGGAGAGCGGGAAGAGTTTGGATGTGGCTGCGGGGA
ACGCCCTGTTGAGGGCGTACCAAGTAGAGGGACGGGTGGAGGAGGCGACG
AGCACGCTGCAGGCTATGGAGTCGGGGTTGTTCAGCGTGCCCCCCTCGGC
GGCCTCGTACGAAATCGTCATGGCGGCCCTGGCTGCCACCGGCGTGGCAG
AGAGGGAGGCGGAGGCCGCGTCGCTGTTTGCGAGGCAGCAGCCCCCGTCC
TCGGAGGGCTTCCGGCTGGCGCTGACGTGCTTGTGCCGTGGCGGTCGGTA
CAAGGAGGCCCTGGGCTTGCTTCCCGCCTTGGGAGAGACGTGCAATGTGG
ACCCGAGCGACAACTTGCTCAAGGCGGCCATGAAGGCCGCGCTGGGCATG
GGCACGAAGGAATCCTTGCCCGCGCTTCGAAAGCTGGCGGCATCGTCGCC
GTCAAGCTCAGCCTTGTAG back to topprotein sequence of NO25G00260.1 >NO25G00260.1-protein ID=NO25G00260.1-protein|Name=NO25G00260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=864bp
MTGRIGRQISLLFLFVLAGVARAFFLGGHKATPAAIGGGGFLPSSGPVQA
WTTTSLSSSAVYTSSSLYAAVGSVMEKPVKMPETDSGENKKVFERLFVQL
SKETSEIPQASLDEALALAARGRSWSRAMKLLRLPTARPTRDQYHMAIVA
CKRAQHKWRQALELIDEAVARGLQPNATSFQEVMSICAVAQRPKEAVSVL
DRMGKAGVNAGLSSYNIAVSALAHQGQWKKALKIITYMEKQAVWPDTKTY
TSAMEACAKAGEWQRALLLLEEMVAQKGVPPSTPTYNAAMRACVVGGQDD
RALAFLDEMLRKGVGVDEDSFGIAIKACEGAKRKDKALELWQEEMPRQSL
PPSLPPLEALLRVLVKTEREVESWPAACAIIDALPPSSPSSSSPSLTQAD
GAMALVRAARSLQLPAEGPGEEGVVGKYVVGKLLAAGRVGEAWREAVRMR
QGAGPCAKPDLVRTRLEMEMKESGVLGKEDEEMNAVKALCEDGELDAAIE
RIRSKGGKPRPSVVNLAMEYAVVIFKDVAAAKKILEIPGAGSRPFYNRAL
RVAAAAKRWGTVASLQKKMTMNGIVSDAETFLQLIVGSTEAESLTRVQRY
HHQMEKEGFATEPAHAVALMAFYNDKRKYSLSLAVFQEQVARNSEAGGEQ
REEMTRLALEACAIGGLWEEVQEIAAAARLSVEEDAAARTALLEAMARAG
GMVGEVEKRVRGLESGKSLDVAAGNALLRAYQVEGRVEEATSTLQAMESG
LFSVPPSAASYEIVMAALAATGVAEREAEAASLFARQQPPSSEGFRLALT
CLCRGGRYKEALGLLPALGETCNVDPSDNLLKAAMKAALGMGTKESLPAL
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