NO25G00220, NO25G00220 (gene) Nannochloropsis oceanica

Overview
NameNO25G00220
Unique NameNO25G00220
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3591
Alignment locationchr25:52200..55790 -

Link to JBrowse

Properties
Property NameValue
Descriptionankyrin repeat family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:52200..55790 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
The following BLAST results are available for this feature:
BLAST of NO25G00220 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR043ncniR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G00220.2NO25G00220.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO25G00220.1NO25G00220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|206518gene_8504Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G00220.2NO25G00220.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO25G00220.1NO25G00220.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G00220 ID=NO25G00220|Name=NO25G00220|organism=Nannochloropsis oceanica|type=gene|length=3591bp
ATGCTTGAACGCCTTCGAATCGCGAAGGGAGGAGCACCGACATGTGCCAG
gtgaatattataagctcacaacactgcacccacctcccctcctcgccaca
gtacagtgagccaccaaatcactttagcaagtggagtggcaggtctacca
tggagcgtcacgaccatcatcaccactcctacggccctgaatcttctcca
cctacagGGGCCGGCGACACTCACCGGCCTCAGCAGCCGCAGCAGCAGCG
CCACCGCTGCCTTCAGCAATCTTCATTAGCACCAACAGGATCGCAGTACA
TCTCGCCCTCGTACCTGTCGCGGGAAGGAAAGgtgagcttagagaagggg
gaggagactaagaagctcggaggtgggaagggaggaaggaagggagggag
ggagggagggagggagagagtggcaagacacgacaaacaggcaggctggg
gtgtgtccattacatatgcgtctgagtcgctgcatttttaggtctttatg
aaggctgcttgttgcgtgtactcatctttctccctccctcttccctcccc
tttcatctttctctttagCTGTACATGGCCACGCCATCTCCGACTTCGCC
ACCTCCGCCAGCCACGGCTTCCTCCCCCTCCTCCCCCTATCCCCCCCTAC
ACCTCCTCCTCTTCTTCGGTCTTCACCCTCGTTTTCCTCTCCCTCCTCGG
CCGCCACCGCCCCTGGGACGTGTGTCAATGGTGCCAACAGCAACGGCGGC
AACAGCAGCAGCAGCAGAAGCAGCAGCAGCAGCAGCAGCGGCAGCGACAG
CAGGCGGACAGGGATCCTTCTGGTGCAAGCAGTAGTGGCGGGGGACGTGG
CTGAGgtgagaaaggaaggagggagggagggagggagggacgaagggagg
gatcttctgctgctctttgaccactcacattccccccccgtcttacccct
ccctccctccttccctcagGTGCAGCGTCTCGTGGCAGCCTACCCGGAAC
TGGGCCGAGTCTTAACGGCCGCAGACATGCAGGGAAGGACGACGGCGTTG
ATCGAGGCCGCGCAGAGGGGGCACGTGCAGgtagggaggaagagagggaa
ggagggagggaggagggaacgacagcgctgatgggaggcggcgcagaggg
ggggaaaatcagggaagaaaggatggagggagtggaggaaatggggaagg
gaatgagggctattgacaatcagcaggggagacggtaaaataaaaaaact
cggtctgtgacctcctctttgcctcctccctccctcccgcagATGGTTCT
CTACCTCCTCCGACGAGGCGCGGGCATCGATCAGGTGGGCGAGAAACACC
GCACGGCACTCTATTGGGCAGCCAACAAGgtgggtgcagagggagggagg
gagggagggcgtcttgaacgacggagggaaaggcaccatcatgcccacac
ccctccctccccccctccctcccccctccctcccccagGGCCAGGTCGAC
GTGGTCTTGACCCTCCTCTCCCACCGCGCAGACCCGAGCCGTTCCGATCT
TCGAGGACGAACTCCTCTCCTCACGGCTGCATCTCAGgtagggagtcctt
ccctccctccttccctccctcccttctcttctttcattcgtcgttctaac
cggcccgccttttctccctccctccctccctccctccctcccgccctccc
tgttgcagGGGCATGTCGGCGTCCTGTGCGCCTTGCTGGGCCTCAAGAGA
GACGGCAGgtaggaagcgagggagggacggagggacggaggtacagaggg
aatgtagaactgaggtcagtgggcgctaactcacgtgcctccccttttcg
tccctccctcccttcctccctccctacctttctcctttcatccctccctg
tcccgattcctgcagCCCCTCCTCCTCCTCCTCTCCCACCTCCTCCATCG
ACCTCGATGCCGCCACCTACGACAGTCGCCGCACCGCCCTCTGgtgagaa
gaaccctccctccctccctccctccctccctccctccctccctctatttc
ttccattccttcctcttatcctctttttctccctccctccctcctcttca
tcctttcattcccctcccccccctccttccctcagGTACGCTACCCACCG
GGGCCGCACCGCCGCCGTCCGCCTCCTCCTCGAGgtacgccctccctccc
tccctccctccctccctcccttcctccctccctccctccctccctcctca
cttcccatccgcccccccctacttcccccccgccctcagGCGGGTGCCGA
CCCCTCCCTCTCTGACTGGGACTGCCTAAGGCCCCTGGACATAGCTCGCT
GGCGCCAGCCGCAGGGATGCGCCGTACTCCTCCAGgtacaccctccaccc
tccctccctctttccctctattgcatgtccataccaccggctgacattcc
tccttcgttccctccctccctccttctgcggtcacagGAGGCCGAGCGCT
CGTATCTGCTGGCTAAGGCCCGGCGGgtacgaaagagggagggagggagg
gagggagggagggagggagggagggaaagagaagggagaaaggcctctct
gtctgtgtcatgctcaccgccaatcatgccattccatttttaagaaaaca
ggacaattctcttaccttccctccctccctccctccctccctccctccct
ccctcccagGTCTACCTCGACGCCCGCCTCCCCTCCCCTCCCTCCCCCCG
TACCTCGCCCTCCCCCCCTGCCTCGCTGGCCAGTCGCTACCAGAAAGCCA
ACCCCTTGAGCTCTTCCGGgtagggagggagggagggagggagggaggga
gggagggggattggacgtacactttcttcctcacgaaccccgggtcgtcc
tcacacaccgcagGGCCTCCTCCCCCTTGCCTCTCCCCAGCCTCCACTGC
CTCGCGCCTCGCTCCCTCCCTTCCTCCCTCCCTTCCTCCCCTTCCCTCCC
TTCCAACAAACGCACCCGTGGCCTAAACGGCTTGCCGATGTGCTCCTCCC
CCCCTTCCTCCCCCCCTTCCTCCCCCCCTTCCTCCTGGCAATCCGGGACA
GCTCTTGACAAGGAGGTCGTGGCGCGGgtaagtggggagggaaggagaga
gggaaggaagggaggaggaagggggagattcattgtcagcgtatctccac
caactccccctccctccctccctccctcccagGTCTTCGCCCACGCCACC
AGCCGCCTGAGCAGCCCCGCTTTCTCCACCCTCCAGGACCTGATGGGAAA
GACCACGCATTGCCACCTCCCCGAGGACGAGGTTCATTGCACGgtacgcc
ttgccctccctccctccctccctccctccctccctctccctaccctccca
ttcggtcgtaccaagtgccaacgcgattctcaccccatcttttccctccc
tccttccctgtctcccttcctccctccgcagGACGAGGAAGTGGAGGACA
CCTACTACAGACGCAAGGTCGTGGCTTCAAGCTCCTATTCCCTGCCCGGG
GCCCAGTAAGAAGGGAGGGAGGGAGGAAGGGGCGGAGGGAG
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protein sequence of NO25G00220.2

>NO25G00220.2-protein ID=NO25G00220.2-protein|Name=NO25G00220.2|organism=Nannochloropsis oceanica|type=polypeptide|length=562bp
MLERLRIAKGGAPTCARGRRHSPASAAAAAAPPLPSAIFISTNRIAVHLA
LVPVAGRKAVHGHAISDFATSASHGFLPLLPLSPPTPPPLLRSSPSFSSP
SSAATAPGTCVNGANSNGGNSSSSRSSSSSSSGSDSRRTGILLVQAVVAG
DVAEVQRLVAAYPELGRVLTAADMQGRTTALIEAAQRGHVQMVLYLLRRG
AGIDQVGEKHRTALYWAANKGQVDVVLTLLSHRADPSRSDLRGRTPLLTA
ASQGHVGVLCALLGLKRDGSPSSSSSPTSSIDLDAATYDSRRTALWYATH
RGRTAAVRLLLEAGADPSLSDWDCLRPLDIARWRQPQGCAVLLQVHPPPS
LPLSLYCMSIPPADIPPSFPPSLLLRSQEAERSYLLAKARRVYLDARLPS
PPSPRTSPSPPASLASRYQKANPLSSSGASSPLPLPSLHCLAPRSLPSSL
PSSPSLPSNKRTRGLNGLPMCSSPPSSPPSSPPSSWQSGTALDKEVVARV
FAHATSRLSSPAFSTLQDLMGKTTHCHLPEDEVHCTDEEVEDTYYRRKVV
ASSSYSLPGAQ*
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protein sequence of NO25G00220.1

>NO25G00220.1-protein ID=NO25G00220.1-protein|Name=NO25G00220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=528bp
MLERLRIAKGGAPTCARGRRHSPASAAAAAAPPLPSAIFISTNRIAVHLA
LVPVAGRKAVHGHAISDFATSASHGFLPLLPLSPPTPPPLLRSSPSFSSP
SSAATAPGTCVNGANSNGGNSSSSRSSSSSSSGSDSRRTGILLVQAVVAG
DVAEVQRLVAAYPELGRVLTAADMQGRTTALIEAAQRGHVQMVLYLLRRG
AGIDQVGEKHRTALYWAANKGQVDVVLTLLSHRADPSRSDLRGRTPLLTA
ASQGHVGVLCALLGLKRDGSPSSSSSPTSSIDLDAATYDSRRTALWYATH
RGRTAAVRLLLEAGADPSLSDWDCLRPLDIARWRQPQGCAVLLQEAERSY
LLAKARRVYLDARLPSPPSPRTSPSPPASLASRYQKANPLSSSGASSPLP
LPSLHCLAPRSLPSSLPSSPSLPSNKRTRGLNGLPMCSSPPSSPPSSPPS
SWQSGTALDKEVVARVFAHATSRLSSPAFSTLQDLMGKTTHCHLPEDEVH
CTDEEVEDTYYRRKVVASSSYSLPGAQ*
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Synonyms
Publications