NO24G02410, NO24G02410 (gene) Nannochloropsis oceanica

Overview
NameNO24G02410
Unique NameNO24G02410
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1908
Alignment locationchr24:660005..661912 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:660005..661912 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO24G02410 vs. NCBI_GenBank
Match: XP_005855779.1 (hypothetical protein NGA_0626100 [Nannochloropsis gaditana CCMP526] >EKU20583.1 hypothetical protein NGA_0626100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 124.0 bits (310), Expect = 5.800e-25
Identity = 62/88 (70.45%), Postives = 69/88 (78.41%), Query Frame = 0 
Query:  131 VTSLLASEDGTKSVEVAKLRVGKVYEDHGVLVEDCLVEAEGKQYRSFAVEGNKEKVKAFLSSHAVGKKMYELAMTQKEAVLHGYPNFV 219
            VTSLLASEDGTKSVEVAKLRV K Y+  GV VEDCLVEAEGK YRSFAVEG  + VK FL++H VG+K+Y  A     A+LHGYP FV
Sbjct:  125 VTSLLASEDGTKSVEVAKLRVDKAYDTEGVHVEDCLVEAEGKDYRSFAVEGKSDDVKRFLATHPVGQKLYAQATADVGAILHGYPGFV 212
The following BLAST results are available for this feature:
BLAST of NO24G02410 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855779.15.800e-2570.45hypothetical protein NGA_0626100 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL043nonsL043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR077ncniR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G02410.1NO24G02410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674790gene_10386Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G02410.1NO24G02410.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G02410 ID=NO24G02410|Name=NO24G02410|organism=Nannochloropsis oceanica|type=gene|length=1908bp
TAGTCGGGAATGCCTGTAGTCTATGCAGTAGAGGAAGGTGTGTGAGGGCT
GGCGGCAGTCGAGATGGACAAAAAACGCTGGTGGTTTGCACCTTTCGCCG
TTACTTCCTCTTCAGGCGACTTGGTTGTCCTTCTGTTGCCGTCCTTAGAT
TCAACAAGGACAAGAACACAGTCTCTTACGCAGCGATATGCACGCACCTG
CGTGCTGCGTGTCCACAAGGGCGGACCATTGTAACCTCCCCCTTTCCCTC
CCTCTCCCTCGACTCTCCCAGCTTCCACCCCCGGCAGGTATGAGCCTCGG
CCATATGGAGCCTTGGCTGCAGTAGACAAGAGTACTGCTCAGCTTTTCCG
CCTGTGCCCTACTGCTGTGCGCAAAGCTGACATCCCTCTCTTTCCCCTTC
CCCCTGACCTTTCTCATTTTAACAGCGCACCACACCTGCACTGCACAGAT
AGCATGACAACCCCAGCCCCGGCCGTCCCGGAGCAGGAATCTAAGGAAAT
TCGGGCTGAGTGGCGGGTGTTTATTCCCATGGCAACCAAACTTAGCCAGG
AAACCCTTGGAGATGTGTTCGACGGCCCCTATGACAAGCGGAAGGGAGAT
GGTATGGAGGGCCGGAGCGACGTgtaggtacattcggaaattgagcggga
gtacaccgacctgagtcgtcccttcataatgccgcagacatcggcacctt
agcatcggccgtagttgaaagggaggggtcgaaaggacgcaagatcttgt
gcccgcgcactcacccgtccatttctctatctcttccttcctttacttct
tcagCTATATTGCTGTAAACCCGGCCATTGGCTTGAAGCGTCGCGGTGCC
AAGGGTCGCGTGGAGCTCAAACTCCTGACGGAAGACAGAAAGGAGGGGGA
GGAGGAAGACATCAAGGGTATCGAGCACTGGAAGAAGTTCAAGgcgagtg
accgttcatgagtgcaccaaaccttttcttctcctctagcgtcaagcacc
tacggtcaatcctcgtctataacttcgaccatcacttttacgacctccct
ctatttacaccaacagATCGGGAAGGGCCTGGCGGAGGAGGAGTCGCTCG
CGCAAGTGCACACGTTGCTTGAGgtatggaaggccaggaaggggccagtg
gccaggtggacagcacaaactcttgcattcatcccaactcttccatttat
gtcatttttctttctaacagGCTCACGGTTTGATTGACAGCCACGTCACT
TCCCTTCTCGCCTCGGAGGACGGAACCAAGAGTGTGGAGGTTGCCAAGgt
tcgtttctctttcaactttttctgtactccatgtccatgttccggttcaa
accttccttctcctcattggcttccacatgtatctttcttcttcacaaag
CTGCGTGTGGGTAAGGTCTATGAAGACCATGGAGTCCTTGTGGAGGACTG
CCTGGTTGAAGCCGAGGGCAAGCAATATCGCAGCTTCGCCGTAGAAGGGA
ACAAAGAGAAAGTGAAGGCTTTTCTCTCTTCCCACGCTGTGGGGAAAAAA
ATGTATGAGCTGGCAATGACTCAGAAAGAGGCAGTCTTGCATGGCTATCC
GAATTTTGTTTGCAAGTGTGCGTGCCTCTAAGAAGTGGTGAAACGAGAAA
GGTAAAGATGTAGGGTCCTCACGTTGGCGAGATAATGGAAAATCGGGCTT
AGAGTAGATTAGATCTATGTATTTGGTTAGATATGTCTTAATAGGGTAAG
GGGTAGATACCTGATCGTACCTATAAGGGAGAGGGAAGAGAATGTGTGGG
GTCTCCGAACGCGTTTATGCGTCGGTTGTGTGAGTTGTTCCCATGATCTT
AACCGAAAGACAAGGCCGAGGATGCCAACTGTAATGACAGTTTAAATGAA
ATTCGATT
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protein sequence of NO24G02410.1

>NO24G02410.1-protein ID=NO24G02410.1-protein|Name=NO24G02410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=225bp
MTTPAPAVPEQESKEIRAEWRVFIPMATKLSQETLGDVFDGPYDKRKGDG
MEGRSDVYIAVNPAIGLKRRGAKGRVELKLLTEDRKEGEEEDIKGIEHWK
KFKIGKGLAEEESLAQVHTLLEAHGLIDSHVTSLLASEDGTKSVEVAKLR
VGKVYEDHGVLVEDCLVEAEGKQYRSFAVEGNKEKVKAFLSSHAVGKKMY
ELAMTQKEAVLHGYPNFVCKCACL*
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Synonyms
Publications