NO24G02400, NO24G02400 (gene) Nannochloropsis oceanica

Overview
NameNO24G02400
Unique NameNO24G02400
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1026
Alignment locationchr24:658777..659802 +

Link to JBrowse

Properties
Property NameValue
DescriptionBifunctional apoptosis regulator
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:658777..659802 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO24G02400 vs. NCBI_GenBank
Match: EWM24452.1 (bifunctional apoptosis regulator [Nannochloropsis gaditana])

HSP 1 Score: 439.5 bits (1129), Expect = 9.500e-120
Identity = 238/357 (66.67%), Postives = 270/357 (75.63%), Query Frame = 0 
Query:    1 MSPLRLAPLADKAAHVEAILRMDSWEEWWSLSRCLATQEGGKGG------KSGSGCRLTRVAPTSASSSS----------------------SFLAPTPSFSSLSSQHEVSSMRGLDDMSFPGSELLATVYMYPSWGWIERVSRGVEGTIMDLLRVFHSPTPASILGAFPGFGMGVYALTHPGWSAPFRELVAFLAIEGEFQQLMALWTVLTIPTRIPRNPLDIPPLTEMPAYAWTVLSLTLAQGAYLLACEMFATLLDVVALSPMLLALTRGTYWRSEASLVATLLVRFWLMLRQDMKILNGFFGRYSRMEATVLRLFIIGCVFTAPLWAPRPVYNSSDLVSALANTGEEMISEIM 330
            + PLRLAPL  KAA VEAILR+D+W EW SL RCLA   G K G      +  S CRL R    S   SS                          P PS SS +S+        L+D +FPGSELLAT+YMYPSWGWIERVSRGVEGT++DLL+V  +PTPASILGAFPGFGMGVYAL H GWSAPFRELVAFLAIEGE +Q MA+WTVLTIPTRIPRNPLDIPPL +MPAYAWTVLSLTLAQGAYLLACEMFATLLDVVALSPMLLALT+GT WRSEASL+AT+LVRFWLMLR+D++ L    GRY+ +EAT+LRLFI+  VFTAPLWAPRP++N SDLVSAL + G E+++EIM
Sbjct:  366 LHPLRLAPLPGKAAQVEAILRVDTWTEWLSLERCLAV--GDKAGAVDEDSRRLSFCRLIRQESVSPRPSSVPAKGKESRMDDDVSPPHPRRGHGAPPFPSSSSPASR--------LEDTTFPGSELLATIYMYPSWGWIERVSRGVEGTVIDLLQVLQTPTPASILGAFPGFGMGVYALAHHGWSAPFRELVAFLAIEGEIRQFMAVWTVLTIPTRIPRNPLDIPPLGDMPAYAWTVLSLTLAQGAYLLACEMFATLLDVVALSPMLLALTQGTCWRSEASLIATVLVRFWLMLREDVRALEACLGRYTALEATILRLFILLSVFTAPLWAPRPMFNGSDLVSALTSAGGEVVTEIM 712
The following BLAST results are available for this feature:
BLAST of NO24G02400 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24452.19.500e-12066.67bifunctional apoptosis regulator [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL043nonsL043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR077ncniR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G02400.1NO24G02400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G02400.1NO24G02400.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G02400 ID=NO24G02400|Name=NO24G02400|organism=Nannochloropsis oceanica|type=gene|length=1026bp
ATGAGCCCTCTGAGGCTCGCACCTTTGGCGGACAAGGCGGCGCATGTGGA
AGCGATATTACGCATGGATTCATGGGAGGAGTGGTGGTCCTTGTCTCGGT
GTCTGGCAACGCAGGAAGGGGGAAAGGGAGGAAAGTCAGGCTCTGGCTGT
CGGTTGACGCGTGTGGCACCCACGTCTGCGTCCTCCTCCTCCTCATTTCT
CGCTCCTACGCCCTCGTTCTCCTCGTTGTCATCGCAGCATGAAGTTAGCA
GCATGCGTGGTCTAGACGATATGAGCTTCCCTGGGAGCGAGCTGCTGGCA
ACCGTGTACATGTACCCTTCCTGGGGATGGATCGAGCGAGTGTCCCGTGG
TGTTGAAGGCACAATTATGGACCTCCTCCGCGTGTTCCATAGCCCTACTC
CCGCTTCCATTTTGGGGGCTTTTCCTGGCTTTGGTATGGGCGTGTATGCC
TTGACTCATCCAGGCTGGTCCGCGCCATTTCGGGAGCTGGTGGCATTTTT
GGCGATCGAAGGCGAGTTTCAGCAGTTAATGGCCCTGTGGACCGTGCTGA
CCATCCCAACGCGCATCCCGCGAAACCCGCTTGACATTCCTCCTTTGACC
GAAATGCCGGCCTATGCTTGGACTGTTTTGTCCTTGACCCTGGCGCAAGG
AGCTTACTTGCTGGCATGTGAGATGTTTGCGACCCTTTTGGACGTGGTGG
CTTTATCGCCCATGCTTTTAGCGCTCACAAGGGGGACGTACTGGCGGAGC
GAGGCCTCTCTGGTTGCTACTCTTTTGGTGCGATTCTGGTTGATGCTTCG
ACAGGATATGAAAATTCTCAATGGTTTCTTTGGTCGGTACTCGCGCATGG
AAGCGACGGTTCTCCGCCTGTTCATCATAGGCTGTGTCTTTACTGCGCCG
CTGTGGGCGCCTCGGCCCGTGTACAACAGTTCAGATTTGGTGTCGGCGCT
GGCGAACACGGGGGAAGAAATGATCAGTGAGATCATGGGAGAGGTGAGTA
AGGCGGCCGCGGCATCGGTGCGTTGA
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protein sequence of NO24G02400.1

>NO24G02400.1-protein ID=NO24G02400.1-protein|Name=NO24G02400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=342bp
MSPLRLAPLADKAAHVEAILRMDSWEEWWSLSRCLATQEGGKGGKSGSGC
RLTRVAPTSASSSSSFLAPTPSFSSLSSQHEVSSMRGLDDMSFPGSELLA
TVYMYPSWGWIERVSRGVEGTIMDLLRVFHSPTPASILGAFPGFGMGVYA
LTHPGWSAPFRELVAFLAIEGEFQQLMALWTVLTIPTRIPRNPLDIPPLT
EMPAYAWTVLSLTLAQGAYLLACEMFATLLDVVALSPMLLALTRGTYWRS
EASLVATLLVRFWLMLRQDMKILNGFFGRYSRMEATVLRLFIIGCVFTAP
LWAPRPVYNSSDLVSALANTGEEMISEIMGEVSKAAAASVR*
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Synonyms
Publications