NO24G02390, NO24G02390 (gene) Nannochloropsis oceanica

Overview
NameNO24G02390
Unique NameNO24G02390
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1456
Alignment locationchr24:657256..658711 +

Link to JBrowse

Properties
Property NameValue
DescriptionBifunctional apoptosis regulator
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:657256..658711 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
Homology
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BLAST of NO24G02390 vs. NCBI_GenBank
Match: XP_005855776.1 (bifunctional apoptosis regulator [Nannochloropsis gaditana CCMP526] >EKU20580.1 bifunctional apoptosis regulator [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 293.1 bits (749), Expect = 1.200e-75
Identity = 148/224 (66.07%), Postives = 169/224 (75.45%), Query Frame = 0 
Query:   85 GVAANGAGALLFDIDKDAVEGEEDVDGCTPIINHQGEAKGGKVGTHRRITTEGDVEVEEDDLCCFDWGLLVEPVTLLCGHTFCRHCVGIILDDSQTKTHGGTPHTPGSMKCPLCCRSLPAVLPQPNVRLRNDLRAKYPGLYEYRMETVGSAFVKKEEELRSQGKKKGGIMTPDDLQSLLAAHQRRVDRPPLHPALPGAAGG--APLRGGGFLRFLRRHQMDAAA 307
            G  A GAGALL            D  G T     Q   +G ++ THRR++TEG+V+V EDDLCCFDWGLL+EPVT+LCGHTFCRHCVGIIL+DSQ KT GGTPHTPG+MKCPLCCRSLPAVLPQPNVRLRN+LRAKYP LY YRMETVG+AFV+KE ++R QG+K+G IMTP+DL+ LLAAHQRRV          G AGG  A  RGGG LRFLRR Q+DA A
Sbjct:   82 GKTAEGAGALLLQDSSRKESVGSDTAGIT-----QYGGRGREIRTHRRLSTEGEVDVAEDDLCCFDWGLLIEPVTMLCGHTFCRHCVGIILEDSQIKTQGGTPHTPGAMKCPLCCRSLPAVLPQPNVRLRNELRAKYPDLYAYRMETVGAAFVEKESKMRRQGQKRGTIMTPEDLEGLLAAHQRRVTA----ARREGLAGGQRAGPRGGGILRFLRRRQIDALA 296
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BLAST of NO24G02390 vs. NCBI_GenBank
Match: EWM24452.1 (bifunctional apoptosis regulator [Nannochloropsis gaditana])

HSP 1 Score: 293.1 bits (749), Expect = 1.200e-75
Identity = 148/224 (66.07%), Postives = 169/224 (75.45%), Query Frame = 0 
Query:   85 GVAANGAGALLFDIDKDAVEGEEDVDGCTPIINHQGEAKGGKVGTHRRITTEGDVEVEEDDLCCFDWGLLVEPVTLLCGHTFCRHCVGIILDDSQTKTHGGTPHTPGSMKCPLCCRSLPAVLPQPNVRLRNDLRAKYPGLYEYRMETVGSAFVKKEEELRSQGKKKGGIMTPDDLQSLLAAHQRRVDRPPLHPALPGAAGG--APLRGGGFLRFLRRHQMDAAA 307
            G  A GAGALL            D  G T     Q   +G ++ THRR++TEG+V+V EDDLCCFDWGLL+EPVT+LCGHTFCRHCVGIIL+DSQ KT GGTPHTPG+MKCPLCCRSLPAVLPQPNVRLRN+LRAKYP LY YRMETVG+AFV+KE ++R QG+K+G IMTP+DL+ LLAAHQRRV          G AGG  A  RGGG LRFLRR Q+DA A
Sbjct:   82 GKTAEGAGALLLQDSSRKESVGSDTAGIT-----QYGGRGREIRTHRRLSTEGEVDVAEDDLCCFDWGLLIEPVTMLCGHTFCRHCVGIILEDSQIKTQGGTPHTPGAMKCPLCCRSLPAVLPQPNVRLRNELRAKYPDLYAYRMETVGAAFVEKESKMRRQGQKRGTIMTPEDLEGLLAAHQRRVTA----ARREGLAGGQRAGPRGGGILRFLRRRQIDALA 296
The following BLAST results are available for this feature:
BLAST of NO24G02390 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005855776.11.200e-7566.07bifunctional apoptosis regulator [Nannochloropsis ... [more]
EWM24452.11.200e-7566.07bifunctional apoptosis regulator [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL043nonsL043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR077ncniR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G02390.1NO24G02390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674789gene_10385Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G02390.1NO24G02390.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G02390 ID=NO24G02390|Name=NO24G02390|organism=Nannochloropsis oceanica|type=gene|length=1456bp
ATGGAGGATGCACGGGAAGAATTGCAGCGACCCGTTGGCCTTGGCGTTGA
GGGCCTCCGTCGCCGGGTGGCATCCATGCACCCAGTGGAAACGGTAGCCT
CTGCCATTACAGCACGACGGGCAGGACAGCAGGATGGTCTTGTCTACCAG
CACCAGCACCACAACCATAACCACGACGCTGTCACCGCTGCCTCCGATGC
TGGTGGCGGGAAGCCGATGAAGAAGCAGGGAAAGCCCATGCACCCTGTTG
ACGGCGTCGCAGCAAATGGAGCAGGGGCTTTGTTGTTTGATATTGACAAG
GACGCGGTGGAGGGTGAGGAGGATGTTGACGGATGCACACCCATAATTAA
CCACCAAGGAGAAGCTAAGGGAGGCAAGGTGGGGACGCACAGACGCATCA
CGACAGAAGGAGACGTAGAAGTGGAGGAGGACGACCTTTGCTGCTTCGAT
TGGGGTCTACTGGTGGAGCCCGTGACACTTCTGTGTGGCCATACGTTCTG
CCGGCATTGTGTGGGGATTATATTGGATGACTCGCAGACCAAGACGCACG
GAGGGACGCCACACACCCCAGGGTCGATGAAGTGTCCCTTGTGCTGCCGG
TCCCTCCCAGCGGTGCTGCCTCAGCCCAATGTAAGGCTTCGAAATGACTT
GAGGGCGAAGTATCCTGGGCTGTATGAGTACAGgtacgtgaagaaagacg
agacgagaaaggagggagggagggcggttggaagggcgggggccgcgggt
gggggccgcgggcgggggccgctagcatacatgaagcacgagatcatttt
acgatgctcacgcttccttcctctcttaatctctccttcccaccctcttc
actttcccaacagAATGGAGACGGTCGGTTCCGCATTTGTCAAGAAGGAG
GAGGAGTTGCGCAGTCAAGGGAAGAAGAAAGgtgcgtcgaacattgagga
agaagaaagagagggaggaaacgaagacagagagagggatagtgaaaggg
gaacaagaacgtttgcctagatcataatttttctccatttctatttgtat
actgctctattcaacagtctctccaaaagctcaccattttctccctttct
ctctaccatcaccaccagGAGGTATCATGACACCTGACGACCTGCAGAGC
TTATTGGCCGCCCACCAGCGCCGTGTCGACCGTCCTCCCCTCCACCCCGC
CCTTCCTGGTGCCGCCGGTGGTGCTCCTTTGCGTGGAGGAGGCTTCCTTC
GATTCCTGCGTCGGCACCAGATGGATGCAGCGGCTTTAGGGGAGGGAGAC
GACGAGGAAGAGGAGGAGGAGGAGGGGAATGACTTTCGACGGTTCGCACG
GGGGGCGACGAGGGCATGGCGGGCGGGGAGGACGGGGACGAGGACATGGA
CATGGCGGCAGGAGACCCGGTGTCGGATGCTGTGGATTTGTTTCAGTCGG
AGTTAA
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protein sequence of NO24G02390.1

>NO24G02390.1-protein ID=NO24G02390.1-protein|Name=NO24G02390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=363bp
MEDAREELQRPVGLGVEGLRRRVASMHPVETVASAITARRAGQQDGLVYQ
HQHHNHNHDAVTAASDAGGGKPMKKQGKPMHPVDGVAANGAGALLFDIDK
DAVEGEEDVDGCTPIINHQGEAKGGKVGTHRRITTEGDVEVEEDDLCCFD
WGLLVEPVTLLCGHTFCRHCVGIILDDSQTKTHGGTPHTPGSMKCPLCCR
SLPAVLPQPNVRLRNDLRAKYPGLYEYRMETVGSAFVKKEEELRSQGKKK
GGIMTPDDLQSLLAAHQRRVDRPPLHPALPGAAGGAPLRGGGFLRFLRRH
QMDAAALGEGDDEEEEEEEGNDFRRFARGATRAWRAGRTGTRTWTWRQET
RCRMLWICFSRS*
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Synonyms
Publications