NO24G02280, NO24G02280 (gene) Nannochloropsis oceanica

Overview
NameNO24G02280
Unique NameNO24G02280
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1593
Alignment locationchr24:608578..610170 +

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:608578..610170 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR038863Put_Complex_I_su8
Homology
BLAST of NO24G02280 vs. NCBI_GenBank
Match: XP_005855099.1 (hypothetical protein NGA_0399000 [Nannochloropsis gaditana CCMP526] >EKU21255.1 hypothetical protein NGA_0399000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 218.8 bits (556), Expect = 1.700e-53
Identity = 110/149 (73.83%), Postives = 120/149 (80.54%), Query Frame = 0
Query:   73 SSLSVVVKRAGGAALARPLSHEVRRNFTRSAAVLGGG-GHHPGPPLQPFKRTAMPEGPLFEEHELIWDDRVAAEMCLDFDASFVPKGEAVRWWLGGFGFFFSLLGLVSLTDPGAANPCVNKTETMPDLGLSFIQTGGSPAAEEEEAEEE 221
            SSLS++ KRA    LAR       R+FTRSA   GGG GH+PGPP+QPFKRTAMPEGPL+EEHELIWDDRVAAEMC+DFDASFVP  EA RWWLGGFGFFF LLGLV+LTDP + NPCVNK ETMPDLGLSF+ TGGSP   EE  EEE
Sbjct:    2 SSLSLLGKRA--ILLARRPVPSGCRSFTRSAVRAGGGAGHNPGPPMQPFKRTAMPEGPLYEEHELIWDDRVAAEMCIDFDASFVPTREAFRWWLGGFGFFFGLLGLVALTDPASVNPCVNKAETMPDLGLSFLPTGGSPEGGEEGEEEE 148          
BLAST of NO24G02280 vs. NCBI_GenBank
Match: EWM24438.1 (hypothetical protein Naga_101643g1 [Nannochloropsis gaditana])

HSP 1 Score: 119.8 bits (299), Expect = 1.100e-23
Identity = 63/88 (71.59%), Postives = 70/88 (79.55%), Query Frame = 0
Query:   73 SSLSVVVKRAGGAALARPLSHEVRRNFTRSAAVLGGG-GHHPGPPLQPFKRTAMPEGPLFEEHELIWDDRVAAEMCLDFDASFVPKGE 160
            SSLS++ KRA    LAR       R+FTRSA   GGG GH+PGPP+QPFKRTAMPEGPL+EEHELIWDDRVAAEMC+DFDASFVP  E
Sbjct:   46 SSLSLLGKRA--ILLARRPVPSGCRSFTRSAVRAGGGAGHNPGPPMQPFKRTAMPEGPLYEEHELIWDDRVAAEMCIDFDASFVPTRE 131          
BLAST of NO24G02280 vs. NCBI_GenBank
Match: POM61420.1 (hypothetical protein PHPALM_29569 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 92.8 bits (229), Expect = 1.400e-15
Identity = 47/115 (40.87%), Postives = 66/115 (57.39%), Query Frame = 0
Query:   88 ARPLSHEVRRNFT---RSAAVLGGGGHHPGPPLQPFKRTAMPEGPLFEEHELIWDDRVAAEMCLDFDASFVPKGEAVRWWLGGFGFFFSLLGLVSLTDPGAANPCVNKTETMPDL 200
            +R LSH +R   +   R  A+   GGH   PP  PF R   P  PL EE EL+W+D V+ E  +DFDA  +PK +A+R WL G G F +L+G+V+L +P +      +   +PDL
Sbjct:    3 SRTLSHALRGGLSVNVRRQALATRGGHAHRPPPPPFARIQAPAQPLHEEAELVWNDGVSPETLIDFDAPHIPKYQALRHWLYGLGAFATLMGVVTLYNPDSCRQAAKRGNHLPDL 117          
BLAST of NO24G02280 vs. NCBI_GenBank
Match: ETI42464.1 (hypothetical protein F443_12417 [Phytophthora parasitica P1569] >ETK82480.1 hypothetical protein L915_12144 [Phytophthora parasitica] >ETL35865.1 hypothetical protein L916_12069 [Phytophthora parasitica] >ETL89109.1 hypothetical protein L917_11904 [Phytophthora parasitica] >ETM42359.1 hypothetical protein L914_11976 [Phytophthora parasitica] >ETO71083.1 hypothetical protein F444_12519 [Phytophthora parasitica P1976] >ETP12177.1 hypothetical protein F441_12404 [Phytophthora parasitica CJ01A1] >ETP40304.1 hypothetical protein F442_12340 [Phytophthora parasitica P10297])

HSP 1 Score: 92.0 bits (227), Expect = 2.400e-15
Identity = 48/115 (41.74%), Postives = 66/115 (57.39%), Query Frame = 0
Query:   88 ARPLSHEVRRNFT---RSAAVLGGGGHHPGPPLQPFKRTAMPEGPLFEEHELIWDDRVAAEMCLDFDASFVPKGEAVRWWLGGFGFFFSLLGLVSLTDPGAANPCVNKTETMPDL 200
            +R LSH +R   +   R  A+   GGH   PP  PF R   P  PL EE EL+W+D VA E  +DFDA  +PK +A+R WL G G F +L+G+V+L +P +      +   +PDL
Sbjct:    3 SRTLSHALRGGLSVNVRRQALATRGGHAHRPPPPPFARIKTPAQPLHEEAELVWNDGVAPETLIDFDAPHIPKYQALRHWLCGLGGFVTLMGVVTLYNPDSWRQASKRGNHLPDL 117          
BLAST of NO24G02280 vs. NCBI_GenBank
Match: XP_008908747.1 (hypothetical protein PPTG_14011 [Phytophthora parasitica INRA-310] >ETN06245.1 hypothetical protein PPTG_14011 [Phytophthora parasitica INRA-310] >KUF99994.1 actin [Phytophthora nicotianae])

HSP 1 Score: 92.0 bits (227), Expect = 2.400e-15
Identity = 48/115 (41.74%), Postives = 66/115 (57.39%), Query Frame = 0
Query:   88 ARPLSHEVRRNFT---RSAAVLGGGGHHPGPPLQPFKRTAMPEGPLFEEHELIWDDRVAAEMCLDFDASFVPKGEAVRWWLGGFGFFFSLLGLVSLTDPGAANPCVNKTETMPDL 200
            +R LSH +R   +   R  A+   GGH   PP  PF R   P  PL EE EL+W+D VA E  +DFDA  +PK +A+R WL G G F +L+G+V+L +P +      +   +PDL
Sbjct:    3 SRTLSHALRGGLSANVRRQALATRGGHAHRPPPPPFARIKTPAQPLHEEAELVWNDGVAPETLIDFDAPHIPKYQALRHWLCGLGGFVTLMGVVTLYNPDSWRQASKRGNHLPDL 117          
BLAST of NO24G02280 vs. NCBI_GenBank
Match: KUF88850.1 (Mitochondrial inner membrane protease subunit 1 [Phytophthora nicotianae])

HSP 1 Score: 92.0 bits (227), Expect = 2.400e-15
Identity = 48/115 (41.74%), Postives = 66/115 (57.39%), Query Frame = 0
Query:   88 ARPLSHEVRRNFT---RSAAVLGGGGHHPGPPLQPFKRTAMPEGPLFEEHELIWDDRVAAEMCLDFDASFVPKGEAVRWWLGGFGFFFSLLGLVSLTDPGAANPCVNKTETMPDL 200
            +R LSH +R   +   R  A+   GGH   PP  PF R   P  PL EE EL+W+D VA E  +DFDA  +PK +A+R WL G G F +L+G+V+L +P +      +   +PDL
Sbjct:  143 SRTLSHALRGGLSANVRRQALATRGGHAHRPPPPPFARIKTPAQPLHEEAELVWNDGVAPETLIDFDAPHIPKYQALRHWLCGLGGFVTLMGVVTLYNPDSWRQASKRGNHLPDL 257          
BLAST of NO24G02280 vs. NCBI_GenBank
Match: OWZ23230.1 (hypothetical protein PHMEG_0001892 [Phytophthora megakarya])

HSP 1 Score: 92.0 bits (227), Expect = 2.400e-15
Identity = 47/115 (40.87%), Postives = 65/115 (56.52%), Query Frame = 0
Query:   88 ARPLSHEVRRNFT---RSAAVLGGGGHHPGPPLQPFKRTAMPEGPLFEEHELIWDDRVAAEMCLDFDASFVPKGEAVRWWLGGFGFFFSLLGLVSLTDPGAANPCVNKTETMPDL 200
            +R LSH +R   +   R  A+   GGH   PP  PF R   P  PL EE EL+W+D V+ E  +DFDA  +PK +A+R WL G G F +L+G V+L +P +      +   +PDL
Sbjct:    4 SRTLSHALRGGLSVNVRRQALATRGGHAHRPPPPPFARIQAPAQPLHEEAELVWNDGVSPETLIDFDAPHIPKYQALRHWLYGLGAFATLMGAVTLYNPDSCRQAAKRGNHLPDL 118          
BLAST of NO24G02280 vs. NCBI_GenBank
Match: XP_009530706.1 (hypothetical protein PHYSODRAFT_354962 [Phytophthora sojae] >EGZ13277.1 hypothetical protein PHYSODRAFT_354962 [Phytophthora sojae])

HSP 1 Score: 89.4 bits (220), Expect = 1.600e-14
Identity = 51/132 (38.64%), Postives = 71/132 (53.79%), Query Frame = 0
Query:   88 ARPLSHEVRRNFT---RSAAVLGGGGHHPGPPLQPFKRTAMPEGPLFEEHELIWDDRVAAEMCLDFDASFVPKGEAVRWWLGGFGFFFSLLGLVSLTDPGAANPCVNKTETMPDLGLSFIQTGGSPAAEEEE 217
            +R LSH +R   +   R  A+   GGH   PP  PF R      PL EE EL+W+D VA E  +DFDA  +PK +A+R WL G G F +L+G+V+L +P +      +   +PDL    +     PA E +E
Sbjct:    3 SRTLSHALRGGLSVNVRRQALATRGGHAHRPPPPPFARIKEAAAPLHEEAELVWNDGVAPETLIDFDAPHIPKYQALRHWLYGLGAFATLMGVVTLYNPDSWRQASKRGNHLPDLKWE-LGEADEPAGEMDE 133          
BLAST of NO24G02280 vs. NCBI_GenBank
Match: XP_002288182.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED93618.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 89.0 bits (219), Expect = 2.000e-14
Identity = 53/139 (38.13%), Postives = 74/139 (53.24%), Query Frame = 0
Query:   70 TMASSLSVVVKRAGGAALARPLSHEVRRNFTRSAAVLGGGGHHPGPPLQPFKRTAMPEGPLFEEHELIWDDRVAAEMCLDFDASFVPKGEAVRWWLGGFGFFFSLLGLVSLTDPGAANPCVNKTETMPDLGLSFIQTGG 209
            T+A +    ++R  G   A+P S    + +T +A   GG      PPL PF R       L E+++ IWDD VA E+ LDFD   +  GE +  WLGG GFF +L  +V  +DP + NP VN+   M  +G S I+ GG
Sbjct:    6 TLARAAVRSLRRTTG---AQPHSLLTAQPYTTTALTRGGA----TPPLAPFARLPPESEKLVEQYDAIWDDGVAPEVTLDFDCQHISSGEGLAMWLGGLGFFATLYQVVKASDPQSKNPAVNR--KMDGVGESPIELGG 135          
BLAST of NO24G02280 vs. NCBI_GenBank
Match: CBN75758.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 87.8 bits (216), Expect = 4.500e-14
Identity = 45/98 (45.92%), Postives = 55/98 (56.12%), Query Frame = 0
Query:  100 TRSAAVLGGGGHHPGPPLQPFKRTAMPEGPLFEEHELIWDDRVAAEMCLDFDASFVPKGEAVRWWLGGFGFFFSLLGLVSLTDPGAANPCVNKTETMP 198
            T +  V  GGG   GPP  PF R    +  L E HELIWDD VA E  +DFDA  +   EA  WW GG  FF  +LGLV+L+DP +    V +  T+P
Sbjct:    4 TAARQVARGGG---GPPQPPFARNKPVDYQLDENHELIWDDGVAPETTIDFDAPHMSMSEAFAWWGGGLTFFAGMLGLVTLSDPESKREAVPRAATLP 98          
The following BLAST results are available for this feature:
BLAST of NO24G02280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005855099.11.700e-5373.83hypothetical protein NGA_0399000 [Nannochloropsis ... [more]
EWM24438.11.100e-2371.59hypothetical protein Naga_101643g1 [Nannochloropsi... [more]
POM61420.11.400e-1540.87hypothetical protein PHPALM_29569 [Phytophthora pa... [more]
ETI42464.12.400e-1541.74hypothetical protein F443_12417 [Phytophthora para... [more]
XP_008908747.12.400e-1541.74hypothetical protein PPTG_14011 [Phytophthora para... [more]
KUF88850.12.400e-1541.74Mitochondrial inner membrane protease subunit 1 [P... [more]
OWZ23230.12.400e-1540.87hypothetical protein PHMEG_0001892 [Phytophthora m... [more]
XP_009530706.11.600e-1438.64hypothetical protein PHYSODRAFT_354962 [Phytophtho... [more]
XP_002288182.12.000e-1438.13predicted protein [Thalassiosira pseudonana CCMP13... [more]
CBN75758.14.500e-1445.92conserved unknown protein [Ectocarpus siliculosus][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR077ncniR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G02280.1NO24G02280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611223gene_10370Nannochloropsis oceanica (N. oceanica CCMP1779)gene
jgi.p|Nanoce1779_2|672749gene_7453Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101643g1gene6042Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G02280.1NO24G02280.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G02280 ID=NO24G02280|Name=NO24G02280|organism=Nannochloropsis oceanica|type=gene|length=1593bp
TCGCATATCCCTGTCTCCTGCTGTGGTTGTGGGTGGATTGGGGAACAGGA
AAGAGGCGGGTGAATGTCCGCCTTGGTGTATGGATAGATGATGCATTGCA
TTCCGGAAGGACGACAAAGGGACAAGAAGAAGGGAGGGGGGACGACAAGA
CAAGCATATTCACGGTGGTCTCTGAGATGTGGTGGCTGAAATGAGCGTGA
GCTTTAGCCGTAGATGCGACCTTTATTCATATTCACATGCCCACGACGAA
GACGGACTTGCGCAAGCCGCATCGCTAGTGCTGGCGGGGGAGGATGACCA
GAGAGGACGAAAAAGCAGGCGAGGAGAAGTGTGAGCGTATGGATTTGGGA
GGGAGGCGTGGCTCAAAGCAGGAGTGTTATGTACTCCCTCGCGTCACATG
CACCCCCTCCATGACCACTCGGACACAATCATCGACAGGCTCATGTGGCT
GGCTGCGCCCTGCAGGGACCAGATGGCATCACTGGTGTTGCTTTTGTATA
TCTCTCCCACAAACACATTGACCTCTTCTCGTCATCATCATAGTGCTCTC
TCGCTGCCTCCCTTATCCAACCTGCATACACAATCATCCACAGGCGTGAG
AAGGACCATGGCGTCTTCCCTCTCTGTTGTTGTCAAGAGGGCAGGCGGCG
CGGCCTTGGCCCGTCCTCTGTCCCACGAAGTCAGGAGGAATTTTACGCGT
TCGGCGGCGGTACTAGgtgggttgtgtgtggagtggaaggcggacaggaa
gaaagggaaggaggggaggcatgtactgggatgtaattgtactcaagaga
aagttcgataacgagaaggggtggacttgaaaagggcaggtggagaatga
atcgactgtcacgatccgaacgtacacgactcacctccccctctttcccc
cccttgcccacaatcagGCGGTGGTGGCCATCACCCCGGCCCTCCCCTGC
AACCATTTAAGCGTACGGCCATGCCTGAGGGACCGCTATTTGAGGAGCAC
GAGTTGATTTGGGACGATCGGGTGGCGGCGGAGATGTGTCTGGATTTCGA
CGCGAGCTTTGTGCCCAAGGGAGAGgtgagggagggagggggagggaagg
gaaaagcgagagcgaagagagataatttgagaaggcttttatctcgtgtt
gaccttgttgtaatgcttaaacctgctctcttggccgtttccccttgcat
gaccggtagGCTGTGCGATGGTGGCTAGGCGGCTTCGGCTTCTTCTTCTC
TCTGCTCGGCCTCGTCTCCCTCACGGACCCAGGGGCAGCCAATCCGTGCG
TGAACAAGACTGAGACGATGCCAGACCTTGGCCTCTCGTTCATCCAGACG
GGAGGGAGTCCGGCGGCGGAGGAAGAGGAGGCGGAGGAGGAGTAGACGGA
GGGAGGAAGGAGAGGGAGGAGGGTGTTTGTGTCTAGGTAGGGAGGGTTAT
GTTATTCTGAAGATTATAATTATTGCAATGTGAGCAGCGGCAGCAGCAGG
AGCTGAAGAAGAAAACGACAGGGAAGAGGTAGAGGAAAAAGAAGAAGAAT
TGGCAAATAATGACGAAGATTTTGTGGCAGTGATGAGGAGGTT
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protein sequence of NO24G02280.1

>NO24G02280.1-protein ID=NO24G02280.1-protein|Name=NO24G02280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=221bp
MHPLHDHSDTIIDRLMWLAAPCRDQMASLVLLLYISPTNTLTSSRHHHSA
LSLPPLSNLHTQSSTGVRRTMASSLSVVVKRAGGAALARPLSHEVRRNFT
RSAAVLGGGGHHPGPPLQPFKRTAMPEGPLFEEHELIWDDRVAAEMCLDF
DASFVPKGEAVRWWLGGFGFFFSLLGLVSLTDPGAANPCVNKTETMPDLG
LSFIQTGGSPAAEEEEAEEE*
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Synonyms
Publications