NO24G02280, NO24G02280 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO24G02280 vs. NCBI_GenBank
Match: XP_005855099.1 (hypothetical protein NGA_0399000 [Nannochloropsis gaditana CCMP526] >EKU21255.1 hypothetical protein NGA_0399000 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 218.8 bits (556), Expect = 1.700e-53 Identity = 110/149 (73.83%), Postives = 120/149 (80.54%), Query Frame = 0 Query: 73 SSLSVVVKRAGGAALARPLSHEVRRNFTRSAAVLGGG-GHHPGPPLQPFKRTAMPEGPLFEEHELIWDDRVAAEMCLDFDASFVPKGEAVRWWLGGFGFFFSLLGLVSLTDPGAANPCVNKTETMPDLGLSFIQTGGSPAAEEEEAEEE 221 SSLS++ KRA LAR R+FTRSA GGG GH+PGPP+QPFKRTAMPEGPL+EEHELIWDDRVAAEMC+DFDASFVP EA RWWLGGFGFFF LLGLV+LTDP + NPCVNK ETMPDLGLSF+ TGGSP EE EEE Sbjct: 2 SSLSLLGKRA--ILLARRPVPSGCRSFTRSAVRAGGGAGHNPGPPMQPFKRTAMPEGPLYEEHELIWDDRVAAEMCIDFDASFVPTREAFRWWLGGFGFFFGLLGLVALTDPASVNPCVNKAETMPDLGLSFLPTGGSPEGGEEGEEEE 148
BLAST of NO24G02280 vs. NCBI_GenBank
Match: EWM24438.1 (hypothetical protein Naga_101643g1 [Nannochloropsis gaditana]) HSP 1 Score: 119.8 bits (299), Expect = 1.100e-23 Identity = 63/88 (71.59%), Postives = 70/88 (79.55%), Query Frame = 0 Query: 73 SSLSVVVKRAGGAALARPLSHEVRRNFTRSAAVLGGG-GHHPGPPLQPFKRTAMPEGPLFEEHELIWDDRVAAEMCLDFDASFVPKGE 160 SSLS++ KRA LAR R+FTRSA GGG GH+PGPP+QPFKRTAMPEGPL+EEHELIWDDRVAAEMC+DFDASFVP E Sbjct: 46 SSLSLLGKRA--ILLARRPVPSGCRSFTRSAVRAGGGAGHNPGPPMQPFKRTAMPEGPLYEEHELIWDDRVAAEMCIDFDASFVPTRE 131
BLAST of NO24G02280 vs. NCBI_GenBank
Match: POM61420.1 (hypothetical protein PHPALM_29569 [Phytophthora palmivora var. palmivora]) HSP 1 Score: 92.8 bits (229), Expect = 1.400e-15 Identity = 47/115 (40.87%), Postives = 66/115 (57.39%), Query Frame = 0 Query: 88 ARPLSHEVRRNFT---RSAAVLGGGGHHPGPPLQPFKRTAMPEGPLFEEHELIWDDRVAAEMCLDFDASFVPKGEAVRWWLGGFGFFFSLLGLVSLTDPGAANPCVNKTETMPDL 200 +R LSH +R + R A+ GGH PP PF R P PL EE EL+W+D V+ E +DFDA +PK +A+R WL G G F +L+G+V+L +P + + +PDL Sbjct: 3 SRTLSHALRGGLSVNVRRQALATRGGHAHRPPPPPFARIQAPAQPLHEEAELVWNDGVSPETLIDFDAPHIPKYQALRHWLYGLGAFATLMGVVTLYNPDSCRQAAKRGNHLPDL 117
BLAST of NO24G02280 vs. NCBI_GenBank
Match: ETI42464.1 (hypothetical protein F443_12417 [Phytophthora parasitica P1569] >ETK82480.1 hypothetical protein L915_12144 [Phytophthora parasitica] >ETL35865.1 hypothetical protein L916_12069 [Phytophthora parasitica] >ETL89109.1 hypothetical protein L917_11904 [Phytophthora parasitica] >ETM42359.1 hypothetical protein L914_11976 [Phytophthora parasitica] >ETO71083.1 hypothetical protein F444_12519 [Phytophthora parasitica P1976] >ETP12177.1 hypothetical protein F441_12404 [Phytophthora parasitica CJ01A1] >ETP40304.1 hypothetical protein F442_12340 [Phytophthora parasitica P10297]) HSP 1 Score: 92.0 bits (227), Expect = 2.400e-15 Identity = 48/115 (41.74%), Postives = 66/115 (57.39%), Query Frame = 0 Query: 88 ARPLSHEVRRNFT---RSAAVLGGGGHHPGPPLQPFKRTAMPEGPLFEEHELIWDDRVAAEMCLDFDASFVPKGEAVRWWLGGFGFFFSLLGLVSLTDPGAANPCVNKTETMPDL 200 +R LSH +R + R A+ GGH PP PF R P PL EE EL+W+D VA E +DFDA +PK +A+R WL G G F +L+G+V+L +P + + +PDL Sbjct: 3 SRTLSHALRGGLSVNVRRQALATRGGHAHRPPPPPFARIKTPAQPLHEEAELVWNDGVAPETLIDFDAPHIPKYQALRHWLCGLGGFVTLMGVVTLYNPDSWRQASKRGNHLPDL 117
BLAST of NO24G02280 vs. NCBI_GenBank
Match: XP_008908747.1 (hypothetical protein PPTG_14011 [Phytophthora parasitica INRA-310] >ETN06245.1 hypothetical protein PPTG_14011 [Phytophthora parasitica INRA-310] >KUF99994.1 actin [Phytophthora nicotianae]) HSP 1 Score: 92.0 bits (227), Expect = 2.400e-15 Identity = 48/115 (41.74%), Postives = 66/115 (57.39%), Query Frame = 0 Query: 88 ARPLSHEVRRNFT---RSAAVLGGGGHHPGPPLQPFKRTAMPEGPLFEEHELIWDDRVAAEMCLDFDASFVPKGEAVRWWLGGFGFFFSLLGLVSLTDPGAANPCVNKTETMPDL 200 +R LSH +R + R A+ GGH PP PF R P PL EE EL+W+D VA E +DFDA +PK +A+R WL G G F +L+G+V+L +P + + +PDL Sbjct: 3 SRTLSHALRGGLSANVRRQALATRGGHAHRPPPPPFARIKTPAQPLHEEAELVWNDGVAPETLIDFDAPHIPKYQALRHWLCGLGGFVTLMGVVTLYNPDSWRQASKRGNHLPDL 117
BLAST of NO24G02280 vs. NCBI_GenBank
Match: KUF88850.1 (Mitochondrial inner membrane protease subunit 1 [Phytophthora nicotianae]) HSP 1 Score: 92.0 bits (227), Expect = 2.400e-15 Identity = 48/115 (41.74%), Postives = 66/115 (57.39%), Query Frame = 0 Query: 88 ARPLSHEVRRNFT---RSAAVLGGGGHHPGPPLQPFKRTAMPEGPLFEEHELIWDDRVAAEMCLDFDASFVPKGEAVRWWLGGFGFFFSLLGLVSLTDPGAANPCVNKTETMPDL 200 +R LSH +R + R A+ GGH PP PF R P PL EE EL+W+D VA E +DFDA +PK +A+R WL G G F +L+G+V+L +P + + +PDL Sbjct: 143 SRTLSHALRGGLSANVRRQALATRGGHAHRPPPPPFARIKTPAQPLHEEAELVWNDGVAPETLIDFDAPHIPKYQALRHWLCGLGGFVTLMGVVTLYNPDSWRQASKRGNHLPDL 257
BLAST of NO24G02280 vs. NCBI_GenBank
Match: OWZ23230.1 (hypothetical protein PHMEG_0001892 [Phytophthora megakarya]) HSP 1 Score: 92.0 bits (227), Expect = 2.400e-15 Identity = 47/115 (40.87%), Postives = 65/115 (56.52%), Query Frame = 0 Query: 88 ARPLSHEVRRNFT---RSAAVLGGGGHHPGPPLQPFKRTAMPEGPLFEEHELIWDDRVAAEMCLDFDASFVPKGEAVRWWLGGFGFFFSLLGLVSLTDPGAANPCVNKTETMPDL 200 +R LSH +R + R A+ GGH PP PF R P PL EE EL+W+D V+ E +DFDA +PK +A+R WL G G F +L+G V+L +P + + +PDL Sbjct: 4 SRTLSHALRGGLSVNVRRQALATRGGHAHRPPPPPFARIQAPAQPLHEEAELVWNDGVSPETLIDFDAPHIPKYQALRHWLYGLGAFATLMGAVTLYNPDSCRQAAKRGNHLPDL 118
BLAST of NO24G02280 vs. NCBI_GenBank
Match: XP_009530706.1 (hypothetical protein PHYSODRAFT_354962 [Phytophthora sojae] >EGZ13277.1 hypothetical protein PHYSODRAFT_354962 [Phytophthora sojae]) HSP 1 Score: 89.4 bits (220), Expect = 1.600e-14 Identity = 51/132 (38.64%), Postives = 71/132 (53.79%), Query Frame = 0 Query: 88 ARPLSHEVRRNFT---RSAAVLGGGGHHPGPPLQPFKRTAMPEGPLFEEHELIWDDRVAAEMCLDFDASFVPKGEAVRWWLGGFGFFFSLLGLVSLTDPGAANPCVNKTETMPDLGLSFIQTGGSPAAEEEE 217 +R LSH +R + R A+ GGH PP PF R PL EE EL+W+D VA E +DFDA +PK +A+R WL G G F +L+G+V+L +P + + +PDL + PA E +E Sbjct: 3 SRTLSHALRGGLSVNVRRQALATRGGHAHRPPPPPFARIKEAAAPLHEEAELVWNDGVAPETLIDFDAPHIPKYQALRHWLYGLGAFATLMGVVTLYNPDSWRQASKRGNHLPDLKWE-LGEADEPAGEMDE 133
BLAST of NO24G02280 vs. NCBI_GenBank
Match: XP_002288182.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED93618.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 89.0 bits (219), Expect = 2.000e-14 Identity = 53/139 (38.13%), Postives = 74/139 (53.24%), Query Frame = 0 Query: 70 TMASSLSVVVKRAGGAALARPLSHEVRRNFTRSAAVLGGGGHHPGPPLQPFKRTAMPEGPLFEEHELIWDDRVAAEMCLDFDASFVPKGEAVRWWLGGFGFFFSLLGLVSLTDPGAANPCVNKTETMPDLGLSFIQTGG 209 T+A + ++R G A+P S + +T +A GG PPL PF R L E+++ IWDD VA E+ LDFD + GE + WLGG GFF +L +V +DP + NP VN+ M +G S I+ GG Sbjct: 6 TLARAAVRSLRRTTG---AQPHSLLTAQPYTTTALTRGGA----TPPLAPFARLPPESEKLVEQYDAIWDDGVAPEVTLDFDCQHISSGEGLAMWLGGLGFFATLYQVVKASDPQSKNPAVNR--KMDGVGESPIELGG 135
BLAST of NO24G02280 vs. NCBI_GenBank
Match: CBN75758.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 87.8 bits (216), Expect = 4.500e-14 Identity = 45/98 (45.92%), Postives = 55/98 (56.12%), Query Frame = 0 Query: 100 TRSAAVLGGGGHHPGPPLQPFKRTAMPEGPLFEEHELIWDDRVAAEMCLDFDASFVPKGEAVRWWLGGFGFFFSLLGLVSLTDPGAANPCVNKTETMP 198 T + V GGG GPP PF R + L E HELIWDD VA E +DFDA + EA WW GG FF +LGLV+L+DP + V + T+P Sbjct: 4 TAARQVARGGG---GPPQPPFARNKPVDYQLDENHELIWDDGVAPETTIDFDAPHMSMSEAFAWWGGGLTFFAGMLGLVTLSDPESKREAVPRAATLP 98 The following BLAST results are available for this feature:
BLAST of NO24G02280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO24G02280 ID=NO24G02280|Name=NO24G02280|organism=Nannochloropsis oceanica|type=gene|length=1593bpback to top protein sequence of NO24G02280.1 >NO24G02280.1-protein ID=NO24G02280.1-protein|Name=NO24G02280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=221bpback to top Synonyms
Publications
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