NO24G02270, NO24G02270 (gene) Nannochloropsis oceanica

Overview
NameNO24G02270
Unique NameNO24G02270
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4396
Alignment locationchr24:604795..609190 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:604795..609190 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO24G02270 vs. NCBI_GenBank
Match: EWM24439.1 (hypothetical protein Naga_101643g2 [Nannochloropsis gaditana])

HSP 1 Score: 120.9 bits (302), Expect = 6.900e-24
Identity = 71/124 (57.26%), Postives = 87/124 (70.16%), Query Frame = 0
Query:   31 MRRPRPTPSNLPSFLLLLPVL--LLPAAAATADEAPLCGGFPAFMWGGHDSYFAGTEDYALSSVGHDELVESIQSLGSKEAAPEVTVVLVAPPSLHASRPASLPALQAAVQGAPSSRIVPCLTR 153
            MRR RP  +     LL LP+L   LPAA   A+EAPLCG  PAF+WGG ++YF G E+YA SSVGHDE+VES++SL   +  PEV VVLV   S     P+SLP+L+AAVQ A SSR++PCLTR
Sbjct:    1 MRRLRPFFAFPCCSLLFLPLLSFFLPAA---AEEAPLCGTSPAFLWGGRENYFGGREEYAFSSVGHDEVVESVRSLQRLDTPPEVVVVLVTSASPDVPSPSSLPSLKAAVQEAVSSRVIPCLTR 121          
The following BLAST results are available for this feature:
BLAST of NO24G02270 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24439.16.900e-2457.26hypothetical protein Naga_101643g2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR077ncniR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G02270.1NO24G02270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|136139gene_7452Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101643g2gene6043Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G02270.1NO24G02270.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G02270 ID=NO24G02270|Name=NO24G02270|organism=Nannochloropsis oceanica|type=gene|length=4396bp
CGCCATGGTCCTTCTCACGCCTGTGGATGATTGTGTATGCAGGTTGGATA
AGGGAGGCAGCGAGAGAGCACTATGATGATGACGAGAAGAGGTCAATGTG
TTTGTGGGAGAGATATACAAAAGCAACACCAGTGATGCCATCTGGTCCCT
GCAGGGCGCAGCCAGCCACATGAGCCTGTCGATGATTGTGTCCGAGTGGT
CATGGAGGGGGTGCATGTGACGCGAGGGAGTACATAACACTCCTGCTTTG
AGCCACGCCTCCCTCCCAAATCCATACGCTCACACTTCTCCTCGCCTGCT
TTTTCGTCCTCTCTGGTCATCCTCCCCCGCCAGCACTAGCGATGCGGCTT
GCGCAAGTCCGTCTTCGTCGTGGGCATGTGAATATGAATAAAGGTCGCAT
CTACGGCTAAAGCTCACGCTCATTTCAGCCACCACATCTCAGAGACCACC
GTGAATATGCTTGTCTTGTCGTCCCCCCTCCCTTCTTCTTGTCCCTTTGT
CGTCCTTCCGGAATGCAATGCATCATCTATCCATACACCAAGGCGGACAT
TCACCCGCCTCTTTCCTGTTCCCCAATCCACCCACAACCACAGCAGGAGA
CAGGGATATGCGACGCCCAAGACCAACACCGAGCAATCTTCCCTCCTTCC
TCCTCCTCCTACCCGTTCTCCTCCTTCCTGCGGCTGCCGCCACTGCTGAT
GAGGCACCCCTGTGCGGCGGCTTCCCTGCCTTCATGTGGGGCGGCCACGA
CAGCTACTTTGCGGGCACCGAGGATTACGCTTTGAGCAGgtaggttcaaa
agaggaagcgatgaagggatggacggacggacggatagacggtgggaaag
ggacgaaatgacggagggagattcggcgcgccatgcccgcgttatgcaac
tccgccgcgcgccaccccttgcgccattctcatcgttatcattctttcat
atccctgcacccacataaaattcatgtcatcatcgtttcctgtccctgca
cccaaatcaaatacagCGTGGGGCACGACGAACTGGTCGAGAGCATCCAG
TCATTGGGGAGCAAGGAGGCCGCCCCGGAGGTGACCGTCGTCCTAGTGGC
CCCTCCCTCCCTCCATGCCTCCCGCCCTGCCTCCCTCCCTGCCTTACAAG
CAGCAGTTCAAGGCGCTCCTTCTTCCCGGATCGTGCCTTGCTTGACGCGg
taagatgggaaggagggagggagggagaaagggggaaaaaaagagtgtgt
gtaaacggcactatgcgcgctcctttccttctaaacaactcatctctccc
tccctccctccctccttccttccttccctccctctttcccttcttcctct
acagTTCGTCCCTCCTCCCACTCGGTGACGCGTACGTCATGGCGCAGCAT
GTGGAGATGGCCGACGTCCTGTCCTTCCTGGAGAAGGGAGACTTGATGAG
gtaggaatggagggagggggaagggagggaggattatgtttgtcatggac
cagaaagatgagaggaacgacgactgaagcgtgcacagctaactaagccc
tccctccctccctccctccctccctccctcccccagCAACAACCACATGG
ATATCATCGTCTCCTCCCTCCCTCACTCCCTCCCTCCCCCGGCCCTTGAC
ACACTCATCGCCGAGCTCTCAGCCTCCTTGCAGCGCCTGGCCCCAGACGG
CCGCTATCTCGTAGTGCAGgtacgcccgccctccctccctctctcccttc
ctcccttccttccgcccgcctttctgaatcatacccattagcagaagcat
gacgtctccctccctccctccctccctctctccctagACCACTGAATTTT
CCCCTTCTCATGCCGTGGGAGGAGGCAGGTCCCATCACACGACTCACCGG
AAGCTGCAAATCGATCCTGACGATGACGGGgtgagaaaggagggaaggga
gggagggagggagggaaggagggagggagggaaggctacacgacctttca
gccctctgagcacattgacgtgtagtctcacccacccctccctccctccc
ttcctccctccctccgtagTTCTATCCCAAGACCTATCTGTACGCCACCC
CCAACACGGTCGCGGGGCTCTTGACGGgtagggagggagggagggagggt
gggaggagacttaggctgggactgataggaagaagatggcaccgacgtgt
tgatatttgcatttgtctctccagcttgtcgatccttccttgcatttatt
tacccccaccctccctccctccctccctccctccccctccctccctccct
ccctccctccctccctccctccctcccttcagCCGCGTTCATGCTGGCTA
CAGTGTACATGGCGGCCAACCTCCTCTTGAGCATGCAGgtaggaaggaaa
ggagggagggagggagggagggaggggggagggtgggatgtccttcctct
ctctttcactccccaaatgaacgatccctgacatgccacgcattttctct
tactcattcgtgtccacactttttcccctcccgccctccctccctccttc
cctctcccctccctcaatctttttcagGGTCCGTCGACGTTCATCCACGG
GAAGATACCGGAAGGCAAGGAGTTCTAGAAGGCGACGGGACAGGACGGAG
AGGGAGGGAGGGAAGGAGAGAGGGAGGGAGGGAAGGCAAGGAGTCTTGAG
AGGCGACGAGACAAGAGGGGGAGAGAGGATAGTAAGGAAGGAGGGAAGGA
AGAGGCAATGGTTATGGATTGTAGGGTGTATGTATTGGTGGTGTTCTATG
CTGGGATGGCAGAGAGGGAGGGCGGGAGGGAGGGAGGGAGGTAGGGAGGA
AGAGAGGAGGAGAAGGGAGAAAAGTCGAAAATCAAATGAAAGAAGGGAGC
CAGCCAAATAAACGACATAGAATAGGAAGTGAGATACAGTGTGTGGGAAA
AGGGAGGGGGAGGAAGAGATTGTGTGGAGGACGGACGATTGCGATGAGTA
CAAGAAGAGAGGAGAAGAAGGGGTAGGGAGGGAGGGAGGGAGGGAGGGCG
AGTCTTCGGTCAACAAAACTGCCCCATTGCCTTGATTCGTTGTTTCTTTG
GCAGAATGCATTTATTGCATCACGGGCCGTGTCCTCATCGTCCTAGTCCA
TCGCGTGATGACGACGATCACAGTGAGGCCCCCTTCACTTGCGCTCCTCC
AAACCCGGTCCAGAAAGAAAACACACTGAAGAAGCAGAGGCAGGAGAGCC
AAAACAAGAAGTCAAAGAAAAAAGAGAGGCGAAAAAAAAGGAAAGGGAGC
AAATCAATGCGCGTATGCCCACTCATTGTTAAGTTTCGAGGCATATACAT
GAACTTTTTTGTCATGGTTACAGACGCCCAAGCGGCCTTTTCCCCTGCTG
GTGCTGGCCCTGTCTATTGTCTGTTTTGTTAGTCGTCGAGAATGGGCTCT
CGTACTCTTTTTTTAAACATGAAGTCTCTTATTCCCTTCACGCGTGTTAT
TTTGCTGTTTGTTTGTTGGTTGTTGAAAGCTGTTGATTTCCCTCTTGCTG
CTGCCCTTTCCCATTGCTTCGTTTACAACAAACGGCATTGACGAATGCAC
GGAAAACGCACATGCCTGACTTTTTCAAACTCCAAAGACCAAACAGCAGC
TATAACCGTATAAAAGACGCATGGGTTTGGAGCTGCTTGCCGGACAATTT
GGCGTACGTGTACGTACGTGCCCCATTCTCTCGTACCATTTGAGCGCCTT
TTCGCTCCCACGTCACACAGCAGTGGGAGAAGCTGATTCTTACAGCGTTT
ATGGGATGAAATTCACAAAAATGAAGCCTTCATCTCATTCGCTCTCCAGA
TCGCGCGCCGCTCCTCATTGTTGTGACGCATCAATAGAGAGTTCGTTCCT
CACCACCACCGAGCATCGTTCGGGGACATACCCATCAAGCATACACCCAC
TGCACCAGCCCACCTCCCCGCAGGCATTGGATTATTTGCTTATCTCTGTA
GCGCACGACGATATGAATACTAGTCCATATTGACCATGTAAAGGGGCTTA
AGTTTTGGTCCTGCGTGTCGAAGCGCCGGGCGAGTGCCAACCGACTCCCT
CACACCTTTGAACTGACCGTGGGACCCTTCGCTACTTGGCTCGGCAAGCC
TTTTTCTTCATCCTGCACGCATGTGCGATTATGCATTTCCTTACCCTTCA
TACTCGCCCTCCAGACAGAGCGGGTGGTGTCCTGGACAAGGAGACTCACA
AAAGGGCGGCCAGACAGACAGGCCCTATCCACGTCGTTCGTTGCCCTCCC
CTCGCTGAAAGAAAGCGCATAGGTTGATGTGCAAATTCGAATCAAGATCA
TATGGCCTCATCCCCCTCAGCTCCACCGTCACTACACATTCATCAC
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protein sequence of NO24G02270.1

>NO24G02270.1-protein ID=NO24G02270.1-protein|Name=NO24G02270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=314bp
MHHLSIHQGGHSPASFLFPNPPTTTAGDRDMRRPRPTPSNLPSFLLLLPV
LLLPAAAATADEAPLCGGFPAFMWGGHDSYFAGTEDYALSSVGHDELVES
IQSLGSKEAAPEVTVVLVAPPSLHASRPASLPALQAAVQGAPSSRIVPCL
TRSSLLPLGDAYVMAQHVEMADVLSFLEKGDLMSNNHMDIIVSSLPHSLP
PPALDTLIAELSASLQRLAPDGRYLVVQTTEFSPSHAVGGGRSHHTTHRK
LQIDPDDDGFYPKTYLYATPNTVAGLLTAAFMLATVYMAANLLLSMQGPS
TFIHGKIPEGKEF*
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Synonyms
Publications