NO24G02260, NO24G02260 (gene) Nannochloropsis oceanica

Overview
NameNO24G02260
Unique NameNO24G02260
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4656
Alignment locationchr24:600139..604794 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:600139..604794 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO24G02260 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR077ncniR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G02260.2NO24G02260.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO24G02260.1NO24G02260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|634082gene_10368Nannochloropsis oceanica (N. oceanica CCMP1779)gene
jgi.p|Nanoce1779_2|632264gene_7450Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G02260.2NO24G02260.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO24G02260.1NO24G02260.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G02260 ID=NO24G02260|Name=NO24G02260|organism=Nannochloropsis oceanica|type=gene|length=4656bp
CCACCGACTCATCCATGCATCCACAGGACTGCCTAGGCTACCTCCAAGGC
AGACGTGTCCAGGTACCCGCACTCCTAGCCCGGAAAATTTCAATTTTCCT
CCCACGCCAGCCATGGACATGGTGGCCCTGAGCACTGTTCACAATAACCA
GGACGTACACGAAAGGGAGCAGGTAGAGAAGGTGGAAGAAGAGTATTACG
TGCAAGCGTTACTTCGCCTTCTCCGCAAGCAGCATCACCACAACCACAAG
CATGTGCCTACGACAGCCGCGCTACCATCGGGAGGAGTGTGGAGCAGCGG
TACGACAGCACCAAACCTGGGCTCTTCCATGTCTTACCTCGACCCGCTGT
CGTCATTATCGTCGTTGCCCTTGTCTTCCTGGTCCTCGCTGTGGTCGTCG
TCTCCCTCTACCTGCCCTCCCTCGTCCTCGGCCTCGACCTCCTCCTCCAA
GCACCTGGCCAATCTGAAAGCCCTCCGCGCCTGCCTGGACGAGATTCTGA
CCCAATCCGCTTCAACATCGACGACCGATAACGAATACGAGGATACGAGC
GGGGAAGACGGAGAAAACAAGAAGAAGTCGCAGCAAGACGAGCAGGGAGA
ATTGGACATGGGGCATGCAGACTCCAACCTTGGTTTCTCGGAAAATAGCA
TGGGCCACCAGgtaaggcctagacgaacgcaattaatctatcaacctcgc
cgccctctatgttaactgtcctggacatgggaggctgatggcttgtatcg
gtcgcgagttagtatagttacgtgtacctctcaagcatgttggttgtcaa
agtaattgcatcaacttcctttcctcaaccatccacatccttccctcctc
ccctccctcctctcccagCCTCGGGAAATTATACTGGATGATGGTGATTT
TGATGCAGTAGCAACTGCAGGAAAAGGGAGCAGCAGCAGCAGCAGCAGCA
GCAGTACGACGACGAGGGAGGGAGGGGGGGAGGGAGGGAGGGAGGGAGGG
AGGTGGAGGAAGAGTCACTTGAGGCGATCGATGAGTGAGGGGTCATTGTA
TGTGCCGGGGACGGAGGAGGAAGAAGGGGACAGGGGAAAGGAGGAGAGGG
GTGAGGAGGCGAAAGAGGGCAAACAGGAGATGTGGGCGGAGGAGGAGGAA
GGGAAGGAGGAAGGGAAGGAGGAAGCGATTGGAGGAGGCTTGGTTTTGAT
GACGGCCAGCAGCCGCAGCATCAGCAGCATGAACGTCATCAGCgtcactg
gcaatcgcctctcctcactcccttcctccttttccaccacctcccctttc
tcgtcttcctccttcccccctcttcctcctctgcctgccccttggagTCC
GTCACCACCACCCCGGACCTTCTCGGCGTCATCATGCACTTCCTCCTCGT
AGGCGACCCCCCTCTATCCCTCCCTTCCTCCCCTCCCTCCTCCATCCCCA
CCATCCACCCGTCCTCTTTCCAACTTCCCTCCTTCCTTTCCTCCTCCTCG
TCCTCCTATGCCAACGTCGTCGTCCCCCCTCGGTCCCTCCCTCCCTCCCT
CCCTCCCTCCGAATCCATCACCCGCCACGATCGCACGGTGCTTTCCACCC
TTTCCTTGGTGTGCAGGGAGTGGAAGGACACGGCTCGGCAGGGGCAGTTC
TGGCGGCCCATACTCAAAGCTGTCTACCCTGTGGCGTTCGTCCAGAAGGA
GGAGGAGGAGGAGGAGGAAGGGGAGGAGGAAGGAGCAGGAGGAGCAGCAG
CAGCACGGGCCAGAAGGAGAGGGGAGGAGGGTGgtagggagggagggagg
gactgctggagacggggcgcgagggggcggttgcatcagctgtcctcctc
ctcctcctcctccccctccgcctcccgcccgccctccccccttcctactt
cgcgcttctccgcgaccaaggccgggccatcctccaccgacagctcctca
tccacggcaccctccctccccctcactccctcctcctccagTTCGAGGTC
ATCGACATGATGGACGGCTTGCGCCTCCTCTCGTGCTCGGGTCCCTTCCG
CGTTGTGCCCATCGAAGGAACCATCCTCTTACGCCTGACCGgtacttccc
tccctccctccctccctccctccctccctccctccctccttatggtccga
gcggcacgacaagcgggaatccattccttcttgtcgtgtctcggggccga
gaaacatcaaatgccttgtgtccttcccttcctccctcaccaccgcctca
ttccctcgcttcccccctaatgaatactctcccccttcccccttccctca
gGCCCTACTCGCAAGGAGATCGTCGGCCCACCTTTTTCCGCTGCCTCTCG
AGACCCCCCCTTCACCGCTACCTCACCATGGGCGACTACTTCAAGAAAGC
GAACCAAGCAGCGTATCCTACCCGGATCCACGTACGCGCCACGATGgtac
ggcccttccctccctccctcgatcccttcctccctccatccctcccttcg
ttccttcctctgtcgttcatgacatccttttctcctcatcctggtcggat
ctcgtttcagattcaattattcatgcctaatatattcatacctcatcctg
gtcggatctcgtttcaggttcaattattcatgtctaatcccttcttctcc
cttggcctccctccctccctccctccctagGTATGCACCCGCACGGGCCG
TCGTTCTGTCATTTGGGAGTCGGGCAAGGAGAACGCGTGGAAGATCCAGg
tagggagggagggacggagggagggacgatgggtggatggacgcaggaat
gtgacttgactcgtttctattggatgcaacggccttcaaggagccataga
ctcctccctccttccctccctccctccctcccctcctcccccctccgttc
gtgctttttccgcttcacaggacactagacctcacactcctccaaccctc
cctccctccctcagTCCCCCTCTCCCTCCGCTCAGGCCTTTTTGCCCCCC
CGCTCGTTCTTCGTCCGTTCTCAAGGATGGACCCTGATGAACCTGCTTGC
CCTCGGGGGGGGAGGGAGGGAGGGGGGGGGGGGGGTCACCGCTGCTGGTG
CTGCAGGGAATGAGGATGGCGGTCCTGCGCCTTGTCCTCCTCCTCCTCCT
CCTCCTCCCCCTCCTTTTTCTTCCTCTTCTTCGTCCTTTTTGCCGCTGCC
ATTGTTTTCGATGGGAGGAGGGGCCGTAGGACGGGGCTATGGCACGAACC
CTTGGGGGAGCGGAGGAGGAGGCGCAGGAGCGGTAGGAGCAGCCACAGCA
GCAGCAGCAGCAGCAGGTGGAGGAGGAGGAAGAGGAGGAGGAGAAGGAGG
AGGAGCGGTGATGATGAATGTGGACGATGCCACAAATTGGACAGTCTTAA
AGCACTCGGCTTCCTCTGCTTCATTAAgtgagtcgcccctccctccctcc
ctaccttcctcccggcctcccgcatcctcttcccacatcttctctccgcg
tatctgactgtcctactcccttcgccctccctccttccctccctccctcc
ctccccgcagCATCCCTCACCACCGCCCCGCCACTGGGGGCACGAGTGGG
TTTCTACGTACAGCCGGCCATTCCCTCCTCCGACCTTCGTCATGGGAGAC
TCCCCCAAGCCCAGAAACTGTGGCGGCTCGCGGGAGGGGACGAAGATCGg
tgcgtcctcaccccgcccttgctccttccctctttcccttttaacaatcc
agaaccctccctcctttcttgtttcacttttctgtacgtgtgtcatgtct
tttttgtccacacacccctcttactcttccctcctccctccctcctttcc
tctctccttccctccttccctcagGTACGACGACCACGGCTCCTTCATCC
GGCTGGGCTTCAACACCGAAGATATCCAAGCCGTCGGCCGCTTCCTCCAG
TCCCTATGCGCGTAGCTCTCCCTCCTTCCCTCCTTCTTTCCCCCCCTCCC
TCCTTTGCCTTCAGTCTGGGGAAATGCCACTGTACAAAAGTAGTATAGAA
GCTCGTGGTACGCATCTGGTTACCAAAACCATTTTATAATTTTAATTATA
CGGTTATTAGAATTATACAGTTAGCCAGGTACTAAGTGAGCCCATTATTC
ATTTCTTTACTTGTTCATCGGAAGGCTTCAGGAAAGTGTCCAACAGTCAA
ATAATTGTATTTCCTTCCTTTTTCGAATTGTAGTGCTTGGCGACACTATG
GGGATGATGTAGATACATGAAAAACATCGATCAGGCAACAAGAGAGAAAT
ATGTATAGAGATGAGGAAGAGAAGAGAGAGGCTGGGATAGAGAGGGGGGG
GGGGGCAGATGTCCGTGTCAACGTGTGTAACTTGGAGTGAGCTTTTGGCG
CGTGAGAGCGTGATGAAGAGATTGATTCAATGTTTCGCGCCTGTTGCGGT
GCGAGAGTCAGCGACATGGAAGGGGAAAGACAAGAGGTACCATAACATGT
TTATACTTATGCAGTACCGTGCCAACACCGGTGCAGAGAAAGATAGATGT
AGTGGAGCAATAGACGGCGACGAAAAAGAGAATGGAATAAGTGATGAAAT
AAATGAGTGGATAGTTAATTGGTTTCGGGTAGCTCATAAATTGCTCACGA
ACTTCA
back to top

protein sequence of NO24G02260.2

>NO24G02260.2-protein ID=NO24G02260.2-protein|Name=NO24G02260.2|organism=Nannochloropsis oceanica|type=polypeptide|length=789bp
MDMVALSTVHNNQDVHEREQVEKVEEEYYVQALLRLLRKQHHHNHKHVPT
TAALPSGGVWSSGTTAPNLGSSMSYLDPLSSLSSLPLSSWSSLWSSSPST
CPPSSSASTSSSKHLANLKALRACLDEILTQSASTSTTDNEYEDTSGEDG
ENKKKSQQDEQGELDMGHADSNLGFSENSMGHQPREIILDDGDFDAVATA
GKGSSSSSSSSSTTTREGGGEGGREGGRWRKSHLRRSMSEGSLYVPGTEE
EEGDRGKEERGEEAKEGKQEMWAEEEEGKEEGKEEAIGGGLVLMTASSRS
ISSMNVISSVTTTPDLLGVIMHFLLVGDPPLSLPSSPPSSIPTIHPSSFQ
LPSFLSSSSSSYANVVVPPRSLPPSLPPSESITRHDRTVLSTLSLVCREW
KDTARQGQFWRPILKAVYPVAFVQKEEEEEEEGEEEGAGGAAAARARRRG
EEGVRGHRHDGRLAPPLVLGSLPRCAHRRNHPLTPDRPYSQGDRRPTFFR
CLSRPPLHRYLTMGDYFKKANQAAYPTRIHVRATMVCTRTGRRSVIWESG
KENAWKIQSPSPSAQAFLPPRSFFVRSQGWTLMNLLALGGGGREGGGGVT
AAGAAGNEDGGPAPCPPPPPPPPPPFSSSSSSFLPLPLFSMGGGAVGRGY
GTNPWGSGGGGAGAVGAATAAAAAAGGGGGRGGGEGGGAVMMNVDDATNW
TVLKHSASSASLTSLTTAPPLGARVGFYVQPAIPSSDLRHGRLPQAQKLW
RLAGGDEDRYDDHGSFIRLGFNTEDIQAVGRFLQSLCA*
back to top

protein sequence of NO24G02260.1

>NO24G02260.1-protein ID=NO24G02260.1-protein|Name=NO24G02260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=875bp
MDMVALSTVHNNQDVHEREQVEKVEEEYYVQALLRLLRKQHHHNHKHVPT
TAALPSGGVWSSGTTAPNLGSSMSYLDPLSSLSSLPLSSWSSLWSSSPST
CPPSSSASTSSSKHLANLKALRACLDEILTQSASTSTTDNEYEDTSGEDG
ENKKKSQQDEQGELDMGHADSNLGFSENSMGHQPREIILDDGDFDAVATA
GKGSSSSSSSSSTTTREGGGEGGREGGRWRKSHLRRSMSEGSLYVPGTEE
EEGDRGKEERGEEAKEGKQEMWAEEEEGKEEGKEEAIGGGLVLMTASSRS
ISSMNVISSVTTTPDLLGVIMHFLLVGDPPLSLPSSPPSSIPTIHPSSFQ
LPSFLSSSSSSYANVVVPPRSLPPSLPPSESITRHDRTVLSTLSLVCREW
KDTARQGQFWRPILKAVYPVAFVQKEEEEEEEGEEEGAGGAAAARARRRG
EEGVRGHRHDGRLAPPLVLGSLPRCAHRRNHPLTPDRPYSQGDRRPTFFR
CLSRPPLHRYLTMGDYFKKANQAAYPTRIHVRATMVCTRTGRRSVIWESG
KENAWKIQSPSPSAQAFLPPRSFFVRSQGWTLMNLLALGGGGREGGGGVT
AAGAAGNEDGGPAPCPPPPPPPPPPFSSSSSSFLPLPLFSMGGGAVGRGY
GTNPWGSGGGGAGAVGAATAAAAAAGGGGGRGGGEGGGAVMMNVDDATNW
TVLKHSASSASLTSLTTAPPLGARVGFYVQPAIPSSDLRHGRLPQAQKLW
RLAGGDEDRCVLTPPLLLPSFPFNNPEPSLLSCFTFLYVCHVFFVHTPLL
LFPPPSLLSSLLPSFPQVRRPRLLHPAGLQHRRYPSRRPLPPVPMRVALP
PSLLLSPPPSFAFSLGKCHCTKVV*
back to top
Synonyms
Publications