NO24G02240, NO24G02240 (gene) Nannochloropsis oceanica

Overview
NameNO24G02240
Unique NameNO24G02240
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1335
Alignment locationchr24:596926..598260 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:596926..598260 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0016491oxidoreductase activity
Homology
BLAST of NO24G02240 vs. NCBI_GenBank
Match: EWM24434.1 (putative tyrosinase-like protein in chromosome [Nannochloropsis gaditana])

HSP 1 Score: 505.8 bits (1301), Expect = 1.400e-139
Identity = 265/454 (58.37%), Postives = 311/454 (68.50%), Query Frame = 0
Query:    1 MPMVRGDQLSKEVHDAYDPGVDDFGFVTGSPFTLNSSPFVTRSATVCGLPMALPMAPAQNLFDCYENFDTWREATTCMYMQVHLQLHSHLGGGAWNCGVDLKSFHSSYPQYPPELLSFLGVSGRHVWSTLKTRNTRGLIRYRECDIHAGHCSCPDLDTERMPYPKLYSLLASALRGASRTWPGEFFIGTYRDTEELRFKKNDGTFFEWEDQERLLRMVARLWCEAAVDGHFVSMASINDPVFYAAHVYFDRLSHFLALSPAFAERGFNRTWNFDDEEGGA-----------RRQEAEDGG--EDMKQNREQWDQGEYREREERENGLQGGGPRRLRGANRLQEEPSSDNHGQDDGETETARSKNDDTERIYHQVPREECLGGQYQDSSPFTPFLLMSVDEERRLGDIPDKDYGDSNPHRNYIMRDLDALMHPLHPALPYVYDDLVHWGGEMWMP 442
            MPMVR + L ++V  AYDPGVD +GFVT   FTLNSSPFVTRS TVC LPMALPMAPAQNLFDCY++F+TW+EAT+C+YMQVHLQLHSH GGGAW+CGV+LK F  S+PQY  ELLSFLGVSGR           +GL  +RECD  AG C CP LD+E MPY KLY LLAS LR   R WPGEFF+  YR TEELRF KNDG F +WEDQ+RLLRMVARLWCE AV+GHFVSMASINDPVFYAAHVYFDRLSHFLALSPAF ERGFNRTW+    EGG            R++EA+D     D +   E  D    R R+ R    +G   RR+   +R  E  S+    Q   + +     +   E I       ECLGG+Y D SPFTP+L+ + DE+       ++D     P R+Y M+++D LMHPLHP+LPYVYDDLVHWGG+ W P
Sbjct:  545 MPMVRAEDLPEDVMRAYDPGVDAYGFVTSKSFTLNSSPFVTRSETVCDLPMALPMAPAQNLFDCYDSFNTWKEATSCLYMQVHLQLHSHFGGGAWHCGVNLKEFQKSFPQYSSELLSFLGVSGR----------AQGLRGFRECDREAGRCHCPGLDSENMPYYKLYRLLASDLRQVRRAWPGEFFLAPYRGTEELRFLKNDGNFHDWEDQDRLLRMVARLWCETAVNGHFVSMASINDPVFYAAHVYFDRLSHFLALSPAFMERGFNRTWS--KAEGGGEGLQEKGEVKHRQREADDADWERDFEGRGEIEDDVMARNRQVRYR--RGRLRRRVEAGDR--ETSSARGATQQVEQRDVPEDWDSPKESIASDGEMRECLGGRYTDPSPFTPYLMAAADEDEEERVAKEQDL---YPGRHYSMKEIDELMHPLHPSLPYVYDDLVHWGGKQWDP 979          
BLAST of NO24G02240 vs. NCBI_GenBank
Match: XP_005853374.1 (putative tyrosinase-like protein in chromosome, partial [Nannochloropsis gaditana CCMP526] >EKU22986.1 putative tyrosinase-like protein in chromosome, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 327.0 bits (837), Expect = 9.000e-86
Identity = 152/206 (73.79%), Postives = 168/206 (81.55%), Query Frame = 0
Query:   55 MAPAQNLFDCYENFDTWREATTCMYMQVHLQLHSHLGGGAWNCGVDLKSFHSSYPQYPPELLSFLGVSGRHVWSTLKTRNTRGLIRYRECDIHAGHCSCPDLDTERMPYPKLYSLLASALRGASRTWPGEFFIGTYRDTEELRFKKNDGTFFEWEDQERLLRMVARLWCEAAVDGHFVSMASINDPVFYAAHVYFDRLSHFLALSP 261
            MAPAQNLFDCY++F+TW+EAT+C+YMQVHLQLHSH GGGAWNCGV+LK F  S+PQY  ELLSFLGVSGR        ++ RG   +RECD  AG C CP LD+E MPY KLY LLAS LR   R WPGEFF+  YR TEELRF KNDG F +WEDQ+RLLRMVARLWCE AV+GHFVSMASINDPVFYAAHVYFDRLSHFLALSP
Sbjct:    1 MAPAQNLFDCYDSFNTWKEATSCLYMQVHLQLHSHFGGGAWNCGVNLKEFQKSFPQYSSELLSFLGVSGR-------AQDLRG---FRECDREAGRCHCPGLDSENMPYYKLYRLLASDLRQVRRAWPGEFFLAPYRGTEELRFLKNDGNFHDWEDQDRLLRMVARLWCETAVNGHFVSMASINDPVFYAAHVYFDRLSHFLALSP 196          
BLAST of NO24G02240 vs. NCBI_GenBank
Match: CBJ31106.1 (polyphenol oxidase protein [Ectocarpus siliculosus])

HSP 1 Score: 96.7 bits (239), Expect = 2.000e-16
Identity = 68/263 (25.86%), Postives = 114/263 (43.35%), Query Frame = 0
Query:   24 FGFVTGSPFTLNSSPFVTRSATVCGLPMALPMAPAQNLFDCYENFDTWREATTCMYMQVHLQLHSHLGGGAWNCGVDLKSFHSSYPQYPPELLSF-LGVSGRHVWSTLKTRNTRGLIRYRECDI-HAGHCSCPDL-DTERMPYPKLYSLLASALRGASRTWPGEFFIGTYRDTEELRFKKNDGTFFEWEDQERLLRMVARLWCEAAVDGHFVSMASINDPVFYAAHVYFDRLSHFLALSPAFAERGFNRTW----NFDDEEGG 280
            +GFV GS +   + P V R+++ CG+      +  +    C+E+ D+  +   CM   VH  +H  +GGG ++C V++  F    PQ+ PELL+F L     + W +             +CD+     C C  + D        +Y  +  A+    +   G+ FI              +G   + E    L+R +  + CE    G   + A+  DP+F+A H  FD+  H L LSP + +  ++  W    + DD  GG
Sbjct:  254 YGFV-GSTYNYQALPGVLRTSSYCGMQGVSEFSKCEVFVGCFEDNDSLYDWAVCMEHSVHASMHGMIGGG-FDCNVNMAEFQEDNPQFSPELLTFTLQFLLANKWPSNSLMEDFNYCD-EDCDVGQTDPCGCTCITDPFEWTDDAIYDFMEGAMETLQQRAHGDEFIDEDSSARHPLGFAQEGKRLDEESTMLLMRQLMVIGCEPGKVGAMSTGAAPLDPIFWALHAGFDKAQHILQLSPGYRDT-YDFAWVDSESCDDMSGG 512          
BLAST of NO24G02240 vs. NCBI_GenBank
Match: CBJ31897.1 (n/a [Ectocarpus siliculosus])

HSP 1 Score: 95.5 bits (236), Expect = 4.400e-16
Identity = 76/269 (28.25%), Postives = 121/269 (44.98%), Query Frame = 0
Query:   18 DPGVDDFGFVTGSPFTLNSSPFVTRSATVCGLPMALPMAPAQNLFDCYENFDTWREATTCMYMQVHLQLHSHLGGGAWNCGVDLKSFHSSYPQYPPELLSFL------------GVSGRHVWSTLKTRNTRGLIRYRECDIHAGHCSCPDLDTERMPYPKLYSLLASALRGASRTWPGEFFIGTYRD---TEELRFKKNDGTFFEWEDQERLLRMVARLWCEAAVDGHFVSMASINDPVFYAAHVYFDRLSHFLALSPAFAERGFNRTW 272
            +PG   +G++  + + + +   V+R+A+ CG+   +  A    + +C+E +D   E   CM  QVH   H  + GGA+NC VD+  F    P     LLSF                G H  +T  T  T G  + ++C      C+C D D       ++Y  + S +        G  ++  YRD   T +  F++N G   E +D   L+R +  L CE    G      SI DPVF+A H  F++ +  L LSP + +  ++ TW
Sbjct:  389 NPGYSLYGYI-DARYNIQAVDGVSRTASYCGVRGEIEFATCNVIINCFEQYDNISEWNECMENQVHAANHGMM-GGAFNCNVDMVQFQEDNPGLKAGLLSFALEYILVGMWPSNSFMGDH--NTCDTSCTVG--QTQDCG-----CTC-DTDFHDWSDDEVYDKMESQMETMQNRAHGTKYV--YRDDGATYQYGFQQN-GVRLEHDDNMLLMRTLLTLACEPGALGAMSVGPSILDPVFWALHPIFEKATQILQLSPTYKDT-YDFTW 641          
BLAST of NO24G02240 vs. NCBI_GenBank
Match: CBJ31102.1 (tyrosinase-like protein 2 [Ectocarpus siliculosus])

HSP 1 Score: 94.7 bits (234), Expect = 7.500e-16
Identity = 67/256 (26.17%), Postives = 108/256 (42.19%), Query Frame = 0
Query:   22 DDFGFVTGSPFTLNSSPFVTRSATVCGLPMALPMAPAQNLFDCYENFDTWREATTCMYMQVHLQLHSHLGGGAWNCGVDLKSFHSSYPQYPPELLSF-LGVSGRHVWSTLKTRNTRGLIRYRECDIHAGH-CSCPDL-DTERMPYPKLYSLLASALRGASRTWPGEFFIGTYRDTEELRFKKNDGTFFEWEDQERLLRMVARLWCEAAVDGHFVSMASINDPVFYAAHVYFDRLSHFLALSPAFAERGFNRTWNFD 275
            + +GFV G  +   + P V R+ + CGL         +   DC+E+  T+    +CM +QVH  +H  +GGG ++C +D+  FH   PQY   LL+F L     + W +             +CD+  G  C C  L D       ++Y  +   L        G  ++G             +G   + E    LLR +  + C+    G   + A+  DP+F+  H  F++  H L LSP     G+   + FD
Sbjct:  437 NSYGFVDGI-YNFQALPGVIRTNSYCGLEGMAEFTKCEVFVDCFESSGTFYAWASCMELQVHASIHGMIGGG-FDCNIDMVEFHKENPQYHHGLLTFVLEYLLANKWPSNSLMGDLNECA-EQCDVDQGEPCGCTCLVDPFEWTDDEVYDFMEHVLVRLRGRAKGVSYVGEDVTARHPLGFMQEGERLDEESTMLLLRQMMAIGCQPGKVGAMSTGAAPLDPIFWTLHSGFEKAQHILQLSP-----GYRDAYGFD 684          
The following BLAST results are available for this feature:
BLAST of NO24G02240 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
EWM24434.11.400e-13958.37putative tyrosinase-like protein in chromosome [Na... [more]
XP_005853374.19.000e-8673.79putative tyrosinase-like protein in chromosome, pa... [more]
CBJ31106.12.000e-1625.86polyphenol oxidase protein [Ectocarpus siliculosus... [more]
CBJ31897.14.400e-1628.25n/a [Ectocarpus siliculosus][more]
CBJ31102.17.500e-1626.17tyrosinase-like protein 2 [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR077ncniR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G02240.1NO24G02240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G02240.1NO24G02240.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G02240 ID=NO24G02240|Name=NO24G02240|organism=Nannochloropsis oceanica|type=gene|length=1335bp
ATGCCGATGGTTCGAGGGGATCAATTGTCGAAGGAGGTTCATGATGCGTA
CGACCCTGGTGTGGATGATTTCGGTTTCGTGACAGGGAGCCCTTTTACTC
TGAATTCTAGCCCCTTTGTCACGCGCAGCGCAACAGTATGTGGCTTACCG
ATGGCCCTTCCGATGGCGCCTGCGCAGAACCTCTTCGATTGCTATGAAAA
TTTTGACACATGGAGGGAGGCAACGACCTGTATGTATATGCAGGTGCACT
TGCAGCTCCACTCCCACCTTGGGGGCGGGGCCTGGAATTGTGGCGTGGAC
CTCAAGTCATTTCACTCCTCTTATCCGCAATATCCTCCTGAGCTCTTGTC
CTTTCTCGGCGTGTCGGGTCGCCATGTGTGGTCGACGCTCAAGACCAGAA
ATACTCGTGGACTGATCCGTTACCGTGAGTGCGACATTCACGCGGGACAC
TGCTCGTGCCCGGATTTAGACACAGAAAGGATGCCCTACCCCAAACTGTA
CAGTCTTCTGGCGTCGGCCTTGCGAGGAGCAAGTCGGACGTGGCCTGGGG
AGTTTTTCATCGGAACTTATCGAGACACAGAGGAGTTACGGTTTAAGAAA
AATGACGGAACCTTCTTTGAATGGGAGGACCAGGAACGCTTGCTCCGAAT
GGTGGCGCGGTTGTGGTGTGAGGCGGCAGTGGATGGGCATTTTGTGTCAA
TGGCTTCTATCAACGACCCTGTATTTTACGCGGCGCATGTGTACTTTGAC
CGCTTGTCGCACTTCTTGGCATTATCGCCGGCCTTTGCCGAGAGAGGTTT
CAATCGAACGTGGAACTTTGATGACGAAGAGGGTGGGGCCAGGAGGCAGG
AAGCCGAAGATGGAGGAGAAGATATGAAGCAGAATAGGGAGCAATGGGAT
CAGGGCGAGTACAGAGAAAGGGAAGAGCGTGAGAATGGATTGCAAGGAGG
AGGCCCGCGGAGGCTGAGGGGCGCGAATCGACTACAAGAAGAGCCATCAA
GCGACAACCACGGCCAGGACGACGGAGAGACGGAGACGGCGAGAAGTAAA
AACGACGACACGGAGCGTATCTATCACCAAGTCCCCCGGGAAGAGTGTCT
GGGAGGGCAGTACCAGGACTCGTCACCCTTCACACCTTTCCTGTTGATGT
CTGTGGATGAGGAAAGGCGGCTTGGAGACATCCCCGATAAAGACTATGGC
GACTCCAACCCGCACCGGAACTACATCATGAGGGATTTAGACGCGCTTAT
GCATCCCCTCCATCCCGCCTTGCCCTATGTCTACGATGATCTGGTGCATT
GGGGCGGCGAAATGTGGATGCCGCGGGCAGAGTAA
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protein sequence of NO24G02240.1

>NO24G02240.1-protein ID=NO24G02240.1-protein|Name=NO24G02240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=445bp
MPMVRGDQLSKEVHDAYDPGVDDFGFVTGSPFTLNSSPFVTRSATVCGLP
MALPMAPAQNLFDCYENFDTWREATTCMYMQVHLQLHSHLGGGAWNCGVD
LKSFHSSYPQYPPELLSFLGVSGRHVWSTLKTRNTRGLIRYRECDIHAGH
CSCPDLDTERMPYPKLYSLLASALRGASRTWPGEFFIGTYRDTEELRFKK
NDGTFFEWEDQERLLRMVARLWCEAAVDGHFVSMASINDPVFYAAHVYFD
RLSHFLALSPAFAERGFNRTWNFDDEEGGARRQEAEDGGEDMKQNREQWD
QGEYREREERENGLQGGGPRRLRGANRLQEEPSSDNHGQDDGETETARSK
NDDTERIYHQVPREECLGGQYQDSSPFTPFLLMSVDEERRLGDIPDKDYG
DSNPHRNYIMRDLDALMHPLHPALPYVYDDLVHWGGEMWMPRAE*
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Synonyms
Publications