NO24G02230, NO24G02230 (gene) Nannochloropsis oceanica

Overview
NameNO24G02230
Unique NameNO24G02230
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1581
Alignment locationchr24:595181..596761 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:595181..596761 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008922Unchr_di-copper_centre
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0016491oxidoreductase activity
Homology
BLAST of NO24G02230 vs. NCBI_GenBank
Match: EWM24434.1 (putative tyrosinase-like protein in chromosome [Nannochloropsis gaditana])

HSP 1 Score: 263.1 bits (671), Expect = 1.900e-66
Identity = 185/511 (36.20%), Postives = 242/511 (47.36%), Query Frame = 0
Query:    7 EDVDDELGGSGATDKELDCSEAYLLEDEHRQEHMPNRVKQIPHGNLTTFSGQSTPPPLSAAPLNVKPRPWYWPRSAPYLLLLAFGALYFGVRPYLFSTHDS-----------NMTTTSTTDAVALPILAPS-------STVALTKSPEV--SEGPNTSLPPMKKPAPSP----YSLLNSTAALSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPSIPPPSTPLHIQASSAEYGSFAKDTLQLYGWDLILEANRAITLRVLNP------SPPSMPAXXXXXXXXXXXXXNRTDISPNLSTYDWCVKQHNGTILLSLRAVGSLVKGFYCTQPGAGLSIHVTEYPSLRTYSTTAAVCKDVRREMRALTRQDRQMYLKSLNTFYRVPLAEGRARFGPRFANNPLLTSAHNSQTWCLHGPNQFLAVHSAFVYWGEQNMKRISYVD 488
            +D  D+LG SG TD E+D SEA+LLE        P+  K  P+ +      +++PP  +    +V+P    W R  PY  L+  GALY G R Y+ S H+S           N ++  +  +    +L P+         +  ++ PEV  S   N SL P  K A  P     +L NST  L                                                                                                     P+     TPLHIQA SA+YG+ A++TLQLYGWD+I+EA R  TLRVLNP      SP S P              +         TYD+ V++  G ++ S R VG LV    CTQ G+ L++ VTE PSLR+Y T +AVCK+VRREMR LTR DRQ YL+SL+ FYR+PLA+GRAR+GPRFANN LLT+AH+S+ WCLH PNQF+AVHSAF++W EQNMKRIS V+
Sbjct:    7 DDKSDDLGISGVTDGEVDDSEAFLLEKSAWAGPSPSSKK--PNDDKLLTPARTSPPDQA----SVQPYSSCWHRLTPYYALVTLGALYLGARSYIHSQHNSSPPDAIMNISFNSSSLRSKSSFYTQVLDPNKNIHPPVKVIETSRVPEVPSSSYHNLSLTPTSKAADMPPFPSSALSNSTKILLRDGRNASGTQPKSMSSSSSMPSVPPGASPSNFITSSTSHASIISPSGSE---------------------------------------------------PTHDLAQTPLHIQAYSADYGAIAEETLQLYGWDMIIEAKRPTTLRVLNPLHTLDSSPLSSPPTRRTSSSRYHEFGD--------MTYDFEVQEEGGNVVFSRRGVGRLVHDVTCTQAGSTLTVQVTERPSLRSYRTFSAVCKEVRREMRTLTRDDRQTYLESLDIFYRIPLADGRARYGPRFANNALLTAAHSSEIWCLHDPNQFMAVHSAFMHWAEQNMKRISAVE 452          
BLAST of NO24G02230 vs. NCBI_GenBank
Match: CBJ31897.1 (n/a [Ectocarpus siliculosus])

HSP 1 Score: 90.5 bits (223), Expect = 1.700e-14
Identity = 58/212 (27.36%), Postives = 97/212 (45.75%), Query Frame = 0
Query:  284 EYGSFAKDTLQLYGWDLILEANRAITLRVLNPSPPSMPAXXXXXXXXXXXXXNRTDISPNLSTYDWCVKQHNGTILLSLRAVGSLVKGFYCTQPGAGLSIHVTE------------YPSLRTYSTTAAVCKDVRREMRALTRQDRQMYLKSLNTFYRVPLAEGRARFGPRFANNPLLTSAHNSQTWCLHGPNQFLAVHSAFVYWGEQNMKRI 484
            EYG + +  L LYG+D+++E  +  T+ V  P+  S                   D  P     +  V + + T        GS VK    T+ GA  ++HV +               + +  T    CK VRRE+R LT  DR  +  ++  FY V L  G+ ++G  FAN+ ++++ HN++ +C H    FL  H++F  W E++++ I
Sbjct:  123 EYGEYDRGALALYGFDMLVEPYKKTTISVTGPASSS------GSISYSWLLVREDDDEPEAVELE--VVEQDDT------PSGSSVK-VTLTEAGATYALHVQQQQLAPEGGGDASVAVVVSEKTIQVACKHVRRELRDLTSADRTAFFSAMREFYTVNLEAGKEKYGKTFANSKIISTYHNTRNYCFHSGMHFLNAHASFDLWAERSLQMI 319          
BLAST of NO24G02230 vs. NCBI_GenBank
Match: CBJ31102.1 (tyrosinase-like protein 2 [Ectocarpus siliculosus])

HSP 1 Score: 89.0 bits (219), Expect = 4.900e-14
Identity = 74/227 (32.60%), Postives = 115/227 (50.66%), Query Frame = 0
Query:  276 LHIQASSAEYGSFAKDTLQLYGWDLILEANRAITLRVLNPSPPSMP--------AXXXXXXXXXXXXXNRTDISPNLSTYDWCVKQHNG--------TILLSLRAVGSLVKGFYCTQPGAGLSIHVTEYP---SLRTYSTTAAVCKDVRREMRALTRQDRQMYLKSLNTFYRVPLAEGRARFGPRFANNPLLTSAHNSQTWCLHGPNQFLAVHSAFVYWGEQNMKRI 484
            L ++A++ EYG + +  L LYG ++++E +RA  + V +  P  +P         XXXXXXXXXXXXX           Y W + + +         T L+  +A G L      T  G   ++ V +     +L   +     CK VRRE+R+LT +DR  +  ++  FY V L EGR ++G  F+N   + + HNS  +C H    FL  H+AF  W E+N+++I
Sbjct:  136 LELRATN-EYGEYDRGALALYGLEMVVEPHRATRITVSSSRPRRLPPSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYYWLLVRADRSGAPLDGVTPLVDTKAAGPLAT-VTLTDAGEKYALLVQQVEAGGALIAEARVTITCKYVRRELRSLTGEDRTGFFAAMREFYTVSLEEGRGKYGEGFSNAKHVAAYHNSPDYCFHNGMHFLNAHAAFDLWVEKNLQKI 360          
BLAST of NO24G02230 vs. NCBI_GenBank
Match: XP_009039249.1 (hypothetical protein AURANDRAFT_65957 [Aureococcus anophagefferens] >EGB05990.1 hypothetical protein AURANDRAFT_65957 [Aureococcus anophagefferens])

HSP 1 Score: 84.3 bits (207), Expect = 1.200e-12
Identity = 63/212 (29.72%), Postives = 92/212 (43.40%), Query Frame = 0
Query:  274 TPLHIQASSAEYGSFAKDTLQLYGWDLILEANRAITLRVLNPSPPSMPAXXXXXXXXXXXXXNRTDISPNLSTYDWCVKQHNGTILLSLRAVGSLVKGFYCTQPGAGLSIHVTEYPSLRTYSTTAAVCKDVRREMRALTRQDRQMYLKSLNTFYRVPLAEGRARFGPRFANNPLLTSAHNSQTWC--LHGPNQFLAVHSAFVYWGEQNMKRI 484
            TPL  + ++ EYG  A  +L LY +  + E +RA  L                            + +   +TY W V+     +     A  +    F  T PG   ++ + E PS RT +     CK VRRE+RALT ++R  Y  +     ++PL EGRAR+G  F N    T  H   T C   HG   FL  H+AF Y  ++ M+ +
Sbjct:   59 TPLRFRVANPEYGDAAPASLALYPFAHVGEPHRASRL--------------------------TAEDAVGGATYAWTVRLDGALVASGAGATFA----FNFTAPGRRYAVALAESPSGRT-AEDDVHCKYVRREIRALTDRERSAYFDAFEVVAKLPLEEGRARYGEHFVNLHSTTIKHVHGTGCSPFHGGLSFLTAHTAFTYEVDRAMQLV 239          
BLAST of NO24G02230 vs. NCBI_GenBank
Match: CBJ30277.1 (TYRosinase family member (tyr-3) [Ectocarpus siliculosus])

HSP 1 Score: 77.4 bits (189), Expect = 1.500e-10
Identity = 61/218 (27.98%), Postives = 103/218 (47.25%), Query Frame = 0
Query:  272 PSTPLHIQASSAEYGSFAKDTLQLYGWDLILEANRAITLR---VLNPSPPSMPAXXXXXXXXXXXXXNRTDISPNLSTYDWCVKQHNGTILLSLRAVGSLVKGFYCTQPGAGLSIH-VTEYPSLRTYSTTAAVCKDVRREMRALTRQDRQMYLKSLNTFYRVPLAEGRARFGPRFANNPLLTSAHNS--QTWCLHGPNQFLAVHSAFVYWGEQNMKRI 484
            PS  L ++A++ EYG + K +L++YG D+++E  R+ T+    +L  SP  M               N        +   W        + + L   G+             LS+  V E   + T   +   CK VRRE+R LT +DR+ +L ++  +Y +P   G+ R+GP F+N  ++T+ HN+  + +C H   QFL  H+AF    E+ ++ I
Sbjct:   16 PSPKLKLRATN-EYGEYDKASLKMYGLDMVIEPFRSTTVTAEGMLIDSPAHMYVWRLRYADQEGAPQN-----SGTAGDAWNCTTGKPQVTVELERPGT----------AYFLSVESVDENGRVITEGNSKVSCKYVRREIRDLTDRDREAFLDAMLIWYTLPTDVGKDRYGPSFSNYQVITAYHNADVENFCYHIGLQFLTSHAAFDLTMERYLQMI 217          
BLAST of NO24G02230 vs. NCBI_GenBank
Match: CBJ31106.1 (polyphenol oxidase protein [Ectocarpus siliculosus])

HSP 1 Score: 71.2 bits (173), Expect = 1.100e-8
Identity = 33/84 (39.29%), Postives = 49/84 (58.33%), Query Frame = 0
Query:  401 CKDVRREMRALTRQDRQMYLKSLNTFYRVPLAEGRARFGPRFANNPLLTSAHNSQTWCLHGPNQFLAVHSAFVYWGEQNMKRIS 485
            CK VRRE+R LT  DR  +  ++   Y V L EGRA +G  F +   + + HN++ +C H    FL  H+AF  W E N+++I+
Sbjct:   94 CKYVRRELRGLTMADRTGFFAAMRELYTVSLEEGRALYGDGFYDAKHMAAYHNTRDYCFHNGMHFLNAHAAFDLWIESNLQKIN 177          
BLAST of NO24G02230 vs. NCBI_GenBank
Match: CBJ31107.1 (Common central domain of tyrosinase family protein [Ectocarpus siliculosus])

HSP 1 Score: 67.4 bits (163), Expect = 1.500e-7
Identity = 33/92 (35.87%), Postives = 57/92 (61.96%), Query Frame = 0
Query:  395 STTAAVCKDVRREMRALTRQDRQMYLKSLNTFYRVPLAEGRARFGPRFANNPLLTSAHNS--QTWCLHGPNQFLAVHSAFVYWGEQNMKRIS 485
            +T    CK VRRE+R L+  DR+ +L ++  +Y V   +GRA++G  F +  LL S H++  +++C H   QFL  H+AF    E+++++I+
Sbjct:  119 ATIKVSCKHVRRELRDLSEADREAFLDAMEAYYAVSKEDGRAKYGEGFFDYQLLASYHSADLKSFCYHAGVQFLTAHAAFGLMLERSLQKIN 210          
The following BLAST results are available for this feature:
BLAST of NO24G02230 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 7
Match NameE-valueIdentityDescription
EWM24434.11.900e-6636.20putative tyrosinase-like protein in chromosome [Na... [more]
CBJ31897.11.700e-1427.36n/a [Ectocarpus siliculosus][more]
CBJ31102.14.900e-1432.60tyrosinase-like protein 2 [Ectocarpus siliculosus][more]
XP_009039249.11.200e-1229.72hypothetical protein AURANDRAFT_65957 [Aureococcus... [more]
CBJ30277.11.500e-1027.98TYRosinase family member (tyr-3) [Ectocarpus silic... [more]
CBJ31106.11.100e-839.29polyphenol oxidase protein [Ectocarpus siliculosus... [more]
CBJ31107.11.500e-735.87Common central domain of tyrosinase family protein... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR077ncniR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G02230.1NO24G02230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|634080gene_10366Nannochloropsis oceanica (N. oceanica CCMP1779)gene
jgi.p|Nanoce1779_2|672746gene_7448Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100481g2gene6047Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G02230.1NO24G02230.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G02230 ID=NO24G02230|Name=NO24G02230|organism=Nannochloropsis oceanica|type=gene|length=1581bp
ATGTTGAAACCTCTGTCCGAGGACGTGGATGATGAGCTGGGCGGGAGTGG
CGCTACGGATAAGGAACTCGACTGCAGCGAGGCATACTTACTGGAGGATG
AACACCGGCAGGAGCACATGCCCAACCGTGTCAAACAGATCCCGCACGGT
AATTTGACCACATTCTCTGGCCAAAGTACACCACCACCCCTCTCAGCAGC
GCCGCTCAATGTAAAGCCACGTCCCTGGTACTGGCCTCGATCCGCGCCTT
ACTTGCTTTTGCTTGCCTTCGGGGCTTTGTATTTTGGCGTACGCCCGTAT
CTCTTCTCCACGCATGACTCGAACATGACCACCACCAGCACCACGGATGC
AGTAGCACTCCCCATCCTGGCTCCGTCTTCAACTGTTGCCTTGACTAAGT
CTCCAGAAGTCAGCGAGGGTCCCAATACGTCCTTGCCTCCTATGAAGAAG
CCCGCCCCCTCTCCATATTCGCTTCTCAACAGCACTGCCGCCCTCAGTAG
CGTCATCCCGTCAACTTTATCCTCCTCTAATGAGACCAGCGCAATCGTTC
CTCCATTTTCTCCTCCTTTCATTCCCATCGAGATCCCCGATGCCGTCTTG
GAGGAGGCTCCTGGGTCTCCTCCTTCCTCCTCCTCCTCATCATTCCCCTC
GCCCCACAAAAATTTCTCTTCCGCCTTTTCTTCCTCCTTATCTACTGCCT
CGTCGTCGTCTTCCTCTCCTTCTACCAGCTCTTCTCCTCACCGCTTGTCT
TCCGCGACCTCTTCTTTTTCCTCTTCCACCTCCTCCTCCATCCCCCTGCC
CTCTATCCCTCCTCCGTCAACCCCCCTCCATATCCAAGCCAGCTCTGCTG
AGTATGGAAGCTTTGCGAAAGATACTTTGCAACTTTATGGGTGGGATTTG
ATTTTGGAAGCGAACCGTGCCATTACCTTGCGAGTGCTCAATCCCTCTCC
TCCAAGCATGCCAGCTACGTCGTCGCTCGCTGCCTCTTCCTCGTCCTCAT
CCGACAATAGGACCGACATTTCGCCAAACCTCTCGACTTACGATTGGTGT
GTCAAACAACACAACGGCACTATCCTTCTCTCTTTACGCGCCGTCGGCTC
CCTGGTCAAGGGCTTCTACTGCACGCAGCCTGGGGCCGGCCTCTCCATCC
ATGTCACTGAGTACCCTTCTCTCCGCACCTATTCCACTACCGCCGCAGTC
TGCAAGGATGTTCGGCGCGAAATGCGGGCCTTGACACGACAGGATCGTCA
GATGTACTTGAAGAGCCTCAATACCTTCTATCGCGTGCCTTTGGCGGAAG
GTCGGGCGCGTTTCGGGCCTCGGTTTGCGAATAACCCTTTATTGACCTCT
GCGCACAACAGCCAGACATGGTGTCTACATGGACCTAACCAGTTTTTGGC
AGTGCATTCGGCGTTTGTGTATTGGGGGGAGCAGAATATGAAGAGGATAA
GTTACGTGGATGGTTTACGGGAAAGAGGGGGAGGGGCTGGCCGGGGGGAC
GAGGATGTAAACCAATTGTCTTCGGAAGCAAGGCCAGCAGCTGGTGCGCA
GCGGGCGTCGGGGAAGGGGGGGCTCTGCTAG
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protein sequence of NO24G02230.1

>NO24G02230.1-protein ID=NO24G02230.1-protein|Name=NO24G02230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=527bp
MLKPLSEDVDDELGGSGATDKELDCSEAYLLEDEHRQEHMPNRVKQIPHG
NLTTFSGQSTPPPLSAAPLNVKPRPWYWPRSAPYLLLLAFGALYFGVRPY
LFSTHDSNMTTTSTTDAVALPILAPSSTVALTKSPEVSEGPNTSLPPMKK
PAPSPYSLLNSTAALSSVIPSTLSSSNETSAIVPPFSPPFIPIEIPDAVL
EEAPGSPPSSSSSSFPSPHKNFSSAFSSSLSTASSSSSSPSTSSSPHRLS
SATSSFSSSTSSSIPLPSIPPPSTPLHIQASSAEYGSFAKDTLQLYGWDL
ILEANRAITLRVLNPSPPSMPATSSLAASSSSSSDNRTDISPNLSTYDWC
VKQHNGTILLSLRAVGSLVKGFYCTQPGAGLSIHVTEYPSLRTYSTTAAV
CKDVRREMRALTRQDRQMYLKSLNTFYRVPLAEGRARFGPRFANNPLLTS
AHNSQTWCLHGPNQFLAVHSAFVYWGEQNMKRISYVDGLRERGGGAGRGD
EDVNQLSSEARPAAGAQRASGKGGLC*
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Synonyms
Publications