NO24G02180, NO24G02180 (gene) Nannochloropsis oceanica

Overview
NameNO24G02180
Unique NameNO24G02180
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1039
Alignment locationchr24:581400..582438 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:581400..582438 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO24G02180 vs. NCBI_GenBank
Match: EWM24433.1 (hypothetical protein Naga_101474g1 [Nannochloropsis gaditana])

HSP 1 Score: 84.7 bits (208), Expect = 3.400e-13
Identity = 45/76 (59.21%), Postives = 54/76 (71.05%), Query Frame = 0 
Query:   85 QKRKDIYKGGGRRRQRIGG----KRLPLVGLGLFDVLLLVATVVGVYQGHLADFWRDHYTEYSFDHALLDCLVVVA 157
            +KRK   +  G RR   G     ++LPLVGLG+FD+L L ATV+GVYQGHL DFW DHYT YSF+HALLD + V A
Sbjct:   61 EKRKT--EAEGTRRTGTGHHRAMRKLPLVGLGVFDLLFLAATVLGVYQGHLKDFWADHYTNYSFEHALLDAMGVPA 134
The following BLAST results are available for this feature:
BLAST of NO24G02180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24433.13.400e-1359.21hypothetical protein Naga_101474g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G02180.1NO24G02180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632260gene_7445Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G02180.1NO24G02180.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G02180 ID=NO24G02180|Name=NO24G02180|organism=Nannochloropsis oceanica|type=gene|length=1039bp
ATGCCACGAGGTCGGCAAGGGACGAGGCAGGGCACGGATGGTGACACTGT
GGGCATAGTGGGATGTGAGCAAGAGACAGCTGGGCAGCGAGTGCGTTGTC
GGAGGCACCCATGGCCCACTCCTCAGCACGCGTTCCATGCCCTCGgtaca
tcgtccaacccaccctctcttttccacctcgtcacatacttattacacca
caggcacaagtgcaagcaacatcatgccgccccatgcccccagtgggtat
agcgggagtagcagcagtaaacccctcctccccctgagacagCCACGTCC
TCGTCGTCGAGTCACCATGCCGCAAGAGGCGGAAACGGTGGCGGTGCCAG
TGAAACCATCAGCCATGgtaagaaggaagagaggtagacaaagcttgtgt
caagctgccggctgtttctggaaccacgtcaaacaactctccctccctcc
ctccctcccctaagGCGTCCCTCGACCCCTTGGAAACCCCGCCGCGCAGA
AGCGAAAAGACATATACAAAGGAGGAGGACGACGACGGCAAAGAATAGGA
GGAAAGAGGCTGCCATTGGTCGGCTTGGGTTTGTTTGACGTGCTATTACT
GGTGGCCACGGTGGTGGGCGTTTACCAGGGGCATTTGGCCGATTTCTGGA
GAGACCATTACACCGAgtgagtggggaaggagggaggggaagcgacagaa
agggaggtagggacatacttggtgtttggccttaactcgattgtcgcgac
atctggcgcgtaatctgatttaaccctccttccgtccctccctccctcca
tccctccctccctcccattctccaaactaacgtttctcaccctcctttcc
tcccgtttctcctccctcttttcccacagGTACTCCTTTGATCATGCCCT
CCTCGATTGCCTGGTCGTGGTCGCTCTCCGTGGCCTCCTCCTCCTCTTCC
TCCCCTCTTCCTCCCTCCTCCCTCCCTCCCTCCTCTCGCGCCTTCCTCCT
CCTCTTTGTCCTTTCCACCTTGATCTTCCTCATCGTTAA
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protein sequence of NO24G02180.1

>NO24G02180.1-protein ID=NO24G02180.1-protein|Name=NO24G02180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=194bp
MPRGRQGTRQGTDGDTVGIVGCEQETAGQRVRCRRHPWPTPQHAFHALAT
SSSSSHHAARGGNGGGASETISHGVPRPLGNPAAQKRKDIYKGGGRRRQR
IGGKRLPLVGLGLFDVLLLVATVVGVYQGHLADFWRDHYTEYSFDHALLD
CLVVVALRGLLLLFLPSSSLLPPSLLSRLPPPLCPFHLDLPHR*
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Synonyms
Publications