NO24G02120, NO24G02120 (gene) Nannochloropsis oceanica

Overview
NameNO24G02120
Unique NameNO24G02120
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1623
Alignment locationchr24:565465..567087 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:565465..567087 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR036855Znf_CCCH_sf
IPR000571Znf_CCCH
Homology
The following BLAST results are available for this feature:
BLAST of NO24G02120 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G02120.1NO24G02120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G02120.1NO24G02120.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G02120 ID=NO24G02120|Name=NO24G02120|organism=Nannochloropsis oceanica|type=gene|length=1623bp
ATGTTTCCTTCGGACTACGTCATTGGCGGTTGCGTAGGCCATGAGGAGGA
GACTCCGCCCCGCTCCCCACCAAGGCCCTTTGAGACATTACAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAACAACAGCAGCAGCAGCAACAACAACAACAGCAGCA
GCAGCAGCAACAAAAACAACAAAAACAACAGCAGCAACAACAACCGGAGT
TCGAAGATGGCTTGCGTGCCTTCCTGgtacgttttcaggtcttgctcctc
catgtctgtcgaatttctgacagcttcctattgcctgccttgacgggaag
gagtacgtgcccgtgtgtgtttttcgctgcttgggcatctgcgtagtgtg
tgtgtgtgcttgaagatgtaggtgtagggtcttgctcaggccatgtgtat
atgagctttgaagtgtttgcggtcccgcggctacaagcttgtgtctcctg
tcctctccttccctccctccctccctccctcctttcgccctctccacctg
atgtatatctagcgtcttttgcggtaatttgagagaccgacgtgacgtaa
catctccctccctccctccctcctttcattcctcccttcttccttcccct
cctcccgtcctgcctccctccctccctctcgacagCGCGCGAGAAGCGGG
GACAACCTAAGCAATATGGCCCCCCTCTCTCCCCTCCCTCCTCCTTCGCT
TCCTCCTCCTCCTCCCTCCTCCCCCCCTCATCATGCCCGCCTCAGGATCC
ACCTCGCGCCTGGCCGCCCTCCAAGGAGGGAGGGAAGGAGGGAGGGACGG
AGgtggggcaggtctgacttcgaccacgcgccctcctcaccgcacaccgg
gcaaaacaccttgtaaattcctcgctcagCCCGGGGGATGTGCCTCGGGG
CGTCGCTGCAAGTTCCTGCACCCGGGCACCAGAGAGGAGGGAGGGAGGGA
GGGTGGCCGGGGCACGGGTGACTGGTCCTCAGCAGCAACAGCAGCAGCAG
CAGCAGCAGCAGGGCCGGCGgtaatgacaatgatgggagaggggggagga
ggggggaggaggagtgttctacctgtctacggcttcatcctccacgcccg
atctgtcgtcgcttgcctacagTCCTCTGCGGTACCGACAACAACAACAG
CAGCAGCAGGAGCAGCAGCAACAACCACCACCACCACCACCACAGCAACA
ACAACAACAACAACATCAACAACCACCACCACCACCACCACAGCAACACC
AACAACACGGAGTGAACAACCTTGTTCTCCCTTCCGTTCCCCCTTCCTCC
TCCACCCTGGTCAAGCCCTCCCTCCCTCCCTCCCTCCCTGCCTCCCTCCC
TGCCTCCGCCCGCATCACCCCCTGTCGGTTCCACCTCCGAGGTTTCTGTC
GCGCTGGGAAGAAATGTCCTTTCTTACATCTAGGGAGGGCGGGAGGGCGG
GAGGGAGGGCGGGAGGGAGGAGGAGGGGCGGGTTGCCTCGGGTGGGGTCT
GCGGGCAGTTTGGGGGCTGTGGGAGGAGGGAGGGAGGGAGGGAGGGAGGG
CGGGCGGGAAGGGGGTGGCATAG
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protein sequence of NO24G02120.1

>NO24G02120.1-protein ID=NO24G02120.1-protein|Name=NO24G02120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=345bp
MFPSDYVIGGCVGHEEETPPRSPPRPFETLQQQQQQQQQQQQQQQQQQQQ
QQQQQQQQQQQQQQQQQQQQQKQQKQQQQQQPEFEDGLRAFLRARSGDNL
SNMAPLSPLPPPSLPPPPPSSPPHHARLRIHLAPGRPPRREGRREGRSPG
DVPRGVAASSCTRAPERREGGRVAGARVTGPQQQQQQQQQQQGRRPLRYR
QQQQQQQEQQQQPPPPPPQQQQQQQHQQPPPPPPQQHQQHGVNNLVLPSV
PPSSSTLVKPSLPPSLPASLPASARITPCRFHLRGFCRAGKKCPFLHLGR
AGGREGGREGGGGAGCLGWGLRAVWGLWEEGGREGGRAGGKGVA*
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Synonyms
Publications