NO24G01970, NO24G01970 (gene) Nannochloropsis oceanica

Overview
NameNO24G01970
Unique NameNO24G01970
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2165
Alignment locationchr24:516508..518672 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:516508..518672 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO24G01970 vs. NCBI_GenBank
Match: EWM24410.1 (hypothetical protein Naga_102473g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 75.5 bits (184), Expect = 6.700e-10
Identity = 36/65 (55.38%), Postives = 44/65 (67.69%), Query Frame = 0 
Query:  521 SVWGALRGLPLPFGLVGDERLGHLIRMIQSQGMAYDKWARQLGR---EGEGRSVLDVLSGREEGW 583
            SVW ALRGLPLP+ LVGDE LG  +  IQ +G+ YD+W R+ G+       RS+LDVLSG  E W
Sbjct:  116 SVWSALRGLPLPYALVGDEELGMSVMKIQREGLRYDRWVREGGKXXXXXXXRSILDVLSGGGEDW 180
The following BLAST results are available for this feature:
BLAST of NO24G01970 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24410.16.700e-1055.38hypothetical protein Naga_102473g1, partial [Nanno... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G01970.1NO24G01970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672725gene_7422Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_102473g1gene6071Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G01970.1NO24G01970.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G01970 ID=NO24G01970|Name=NO24G01970|organism=Nannochloropsis oceanica|type=gene|length=2165bp
AACACAGGGTGTTATATACAGCGAATCAATAATATGGCGGACAGACGCAG
AGAGCACCATAGGGACCGGTCAGGCGAGCGGGAGAGGGGAGACGATGACC
GGAGTAGTAGCAAAAGCAGACGGCACGAAGGTGGCGGAGGACAAAAGGAG
GGAGAAAGGCAGCAGAATCGCCGTCACCACCACCAGGAGGATGGAGGGAA
TAAAGGGACTAGGGAGGAAGAAGAGGATGGAGACCGACGATGGGACGGGG
ACCGGAGTGAGCGgtaagtggaggctggctgggagggaggcttgatggag
gcagggaggcagacaggcaacgggagaggaagagaaatatatcggcttgg
tgtgcatttttactcacctacaccctttctctgtccatacacccccttca
gCCACCATGATCATCACCACCACGCCAACGGCGGCGACAGCAACGGGGGG
GGAAGGGAGAAAGGGAACGTGACTGGCGCTCTCCCCCTCGCAAACGAAGT
CGAAGCCGCTCTCCCCCCGGCTCAAAGGAGGGAAGGAGGGAGGGAGGTAA
TGAAGGGTTGTTTTTGCAACGGGGTCCGCCGCTGGTTGGTGGGGGTGGAT
GGGAGGGAGGAAGAGGGTGGGAGGGAGGGAGGGGTGGAAGGAGAGGCTTT
CGCGGCGGAGGGAGgttcgactatcgcggatggatgagaggaagaggagg
acagtgggaggaaggacggggcggcggcgcgccttatcaccaccggcaga
cagATGGAAGAGGGGGAGGGTGGGAGGGAGGAAGGTGGGGAGGGAGGGGT
GGAGGAGGGAGGTTTTGGGAAGGGAGAGGAGAACGAGGAGGAGGGAGGGG
AGAGGAGGGGAAGCCTTTCTATCCATATGAACATTCTCAGGGGCCATGGC
CGTCAGGAGAAGCAGAAGAAGCCGCAGCGGCGGCGGCAGCAGCAGCAGTA
GTAGGAGCAGCGCTAGGAGAAGGAGAAGGAGGAGGAGAGGGAAGGAGTGA
AGAAGAAAGAGGAGGAGGAGGAGAAGGAGAAGGAGAAGGAGAAGAGGCAA
CTGAGATGTCATCACACGGAACAGGAGTCGGATCCCTCGCACGGCTTCCG
CCCCCCCTCCCTCTTCCCGGCCCTCCTCCCGGGACCCGTTTCTACCCTCC
CTTTTTCGCCCGTGAGGGAGGAAGAGGAGGGAGGGAGAGAGGAAGGGGAA
GAGGAAGGGGAGGAGGACGGTTTGGAGGCAGGGAGGAAGAGGGTTTTTAC
TACCAGCAGCATGGCCCTCCATCCTTCCCTCCTCCTCACCCTCATCTACA
CCACCATCACCATCACCATCACCACCATGGACCACCAACCGACTCCGCCT
ACCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCC
CTTCCTCCCCCCTCAACCTTATCCTATGGCCCGCCCCTCTCCCTCCCTCC
CGCCCACGCGGCCCCTCCCTCCCTCCCTCCCCCCTTCCCTTCCGTTGAGC
TGACCAGTCAATATGGCCCACAATTATCCGCCCCTCCCTCCCTCCCTCTT
TCCCTCCCTCCCTCCCCGACAACCCCTGACTCGCCGATGGGCCGTCGGTC
GGCGGACAAGGGGGAGGACGGGGGGAGGACGGGGGGAGGACGGGGGGAGG
AAGGGTGGGACGCCATGATCACGGCGGCAAGTGTGAAACAGCGGGAGGCG
AACGAGACGGAGAGGAGGGAGGAGGAAAGGAGGGAGGAGGAGGGGAGGAG
GAGGGCGGAGAGAGAGTGGAGATGGAGGGCGAGGATGGAGGAGGAGAGGG
AGGGAGGGAGGGAGGGAGGGAGTGTGTGGGGGGCGTTGAGAGGCTTGCCA
TTACCGTTTGGATTGGTGGGAGATGAACGGCTCGGCCATTTAATAAGGAT
GATTCAGAGTCAAGGGATGGCGTATGACAAGTGGGCCAGACAGTTAGGAA
GGGAGGGGGAGGGTCGTAGTGTGTTGGATGTGTTGAGTGGACGTGAGGAG
GGGTGGAGGGAGGAAGGGGAGGAGGAGGGTGATGAGGGAGGGAGAGAGGG
GGAAGGATTAGATTTTTGGAATGCCTATCTGTCGGATGCGGAGGAGGCGG
AGGAGGAGGGGGGAGGGAGGGAGGGGAGAGGGAGGGGGGAGGGGAAGGGG
TCCCTCAATGTATGA
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protein sequence of NO24G01970.1

>NO24G01970.1-protein ID=NO24G01970.1-protein|Name=NO24G01970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=635bp
MADRRREHHRDRSGERERGDDDRSSSKSRRHEGGGGQKEGERQQNRRHHH
QEDGGNKGTREEEEDGDRRWDGDRSERHHDHHHHANGGDSNGGGREKGNV
TGALPLANEVEAALPPAQRREGGREVMKGCFCNGVRRWLVGVDGREEEGG
REGGVEGEAFAAEGDGRGGGWEGGRWGGRGGGGRFWEGRGERGGGRGEEG
KPFYPYEHSQGPWPSGEAEEAAAAAAAAAVVGAALGEGEGGGEGRSEEER
GGGGEGEGEGEEATEMSSHGTGVGSLARLPPPLPLPGPPPGTRFYPPFFA
REGGRGGRERGRGRGRGGGRFGGREEEGFYYQQHGPPSFPPPHPHLHHHH
HHHHHHGPPTDSAYLPPPPPPPPPPPPPPSLPPPSTLSYGPPLSLPPAHA
APPSLPPPFPSVELTSQYGPQLSAPPSLPLSLPPSPTTPDSPMGRRSADK
GEDGGRTGGGRGEEGWDAMITAASVKQREANETERREEERREEEGRRRAE
REWRWRARMEEEREGGREGGSVWGALRGLPLPFGLVGDERLGHLIRMIQS
QGMAYDKWARQLGREGEGRSVLDVLSGREEGWREEGEEEGDEGGREGEGL
DFWNAYLSDAEEAEEEGGGREGRGRGEGKGSLNV*
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Synonyms
Publications