NO24G01960, NO24G01960 (gene) Nannochloropsis oceanica

Overview
NameNO24G01960
Unique NameNO24G01960
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length613
Alignment locationchr24:515338..515950 +

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Properties
Property NameValue
DescriptionAcyl-CoA-binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:515338..515950 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0000062fatty-acyl-CoA binding
GO:0000062fatty-acyl-CoA binding
Vocabulary: INTERPRO
TermDefinition
IPR035984Acyl-CoA-binding_sf
IPR000582Acyl-CoA-binding_protein
Homology
BLAST of NO24G01960 vs. NCBI_GenBank
Match: BAN20520.1 (diazepam binding inhibitor, putative [Riptortus pedestris])

HSP 1 Score: 98.2 bits (243), Expect = 1.500e-17
Identity = 51/87 (58.62%), Postives = 62/87 (71.26%), Query Frame = 0
Query:    5 LQQRFEEAAKRIAAWKPAAKDPSDEEKLLIYALFKQSTVGDCNTPKPGLLDFTGRRKHGAWEKQKGKDKIAAMEAYIAEVERQISTY 92
            L+QRF EAA+++   K   K PSDEE L +YALFKQ+TVGD NT KPGLLD  G+ K  AW+K+KG  K AAMEAYI +VE  +  Y
Sbjct:    3 LEQRFNEAAEKV---KELTKRPSDEELLELYALFKQATVGDNNTSKPGLLDLKGKYKWEAWDKKKGLSKDAAMEAYITKVEELVGKY 86          
BLAST of NO24G01960 vs. NCBI_GenBank
Match: AHJ25685.1 (acyl-CoA-binding protein [Macrobrachium nipponense])

HSP 1 Score: 98.2 bits (243), Expect = 1.500e-17
Identity = 48/87 (55.17%), Postives = 64/87 (73.56%), Query Frame = 0
Query:    5 LQQRFEEAAKRIAAWKPAAKDPSDEEKLLIYALFKQSTVGDCNTPKPGLLDFTGRRKHGAWEKQKGKDKIAAMEAYIAEVERQISTY 92
            L++RF EAA+++   K  +K P+DEE L IYALFKQ TVGDCNT +PG++DF G+ K  AW  +KG  K AAMEAYI + ++ I+TY
Sbjct:    3 LEERFNEAAEKV---KNLSKKPNDEELLEIYALFKQGTVGDCNTERPGMMDFKGKAKWDAWNGKKGMTKDAAMEAYINKADQLIATY 86          
BLAST of NO24G01960 vs. NCBI_GenBank
Match: AEP84099.1 (acyl-CoA-binding protein [Penaeus monodon])

HSP 1 Score: 96.7 bits (239), Expect = 4.300e-17
Identity = 47/91 (51.65%), Postives = 66/91 (72.53%), Query Frame = 0
Query:    5 LQQRFEEAAKRIAAWKPAAKDPSDEEKLLIYALFKQSTVGDCNTPKPGLLDFTGRRKHGAWEKQKGKDKIAAMEAYIAEVERQISTYGTKA 96
            L+++F +AA+++   K   + P+D+E   IY+LFKQ+TVGD NT +PG+LDF G+ K  AW  +KG  K AAMEAY+A+ E+ ISTYG KA
Sbjct:    3 LEEKFNKAAEQV---KNLQQQPTDDELKEIYSLFKQATVGDINTERPGMLDFKGKAKWDAWSSKKGMSKEAAMEAYVAKAEQLISTYGLKA 90          
BLAST of NO24G01960 vs. NCBI_GenBank
Match: ACU82846.1 (acyl-CoA-binding protein [Fenneropenaeus chinensis])

HSP 1 Score: 95.5 bits (236), Expect = 9.500e-17
Identity = 46/91 (50.55%), Postives = 66/91 (72.53%), Query Frame = 0
Query:    5 LQQRFEEAAKRIAAWKPAAKDPSDEEKLLIYALFKQSTVGDCNTPKPGLLDFTGRRKHGAWEKQKGKDKIAAMEAYIAEVERQISTYGTKA 96
            L+++F +AA+++   K   + P+D+E   IY+L+KQ+TVGD NT +PG+LDF G+ K  AW  +KG  K AAMEAY+A+ E+ ISTYG KA
Sbjct:    3 LEEKFNKAAEQV---KNLQQQPTDDELKEIYSLYKQATVGDINTERPGMLDFKGKAKWDAWSSKKGMSKEAAMEAYVAKAEQLISTYGLKA 90          
BLAST of NO24G01960 vs. NCBI_GenBank
Match: XP_003456254.1 (PREDICTED: acyl-CoA-binding protein isoform X2 [Oreochromis niloticus])

HSP 1 Score: 94.7 bits (234), Expect = 1.600e-16
Identity = 49/89 (55.06%), Postives = 59/89 (66.29%), Query Frame = 0
Query:    4 ELQQRFEEAAKRIAAWKPAAKDPSDEEKLLIYALFKQSTVGDCNTPKPGLLDFTGRRKHGAWEKQKGKDKIAAMEAYIAEVERQISTYG 93
            ELQ +F+EAA  +   K     P+DEE L IY+LFKQ+TVGD NT +PG+ DFTG+ K  AWEKQKGK K  AM  YI+ VE     YG
Sbjct:    3 ELQTKFDEAAAEV---KQLKAKPTDEEMLQIYSLFKQATVGDVNTSRPGMFDFTGKAKWDAWEKQKGKSKENAMNEYISLVEELKQKYG 88          
BLAST of NO24G01960 vs. NCBI_GenBank
Match: XP_008612064.1 (diazepam-binding inhibitor (GABA receptor modulator, acyl-CoA-binding protein) [Saprolegnia diclina VS20] >EQC34658.1 diazepam-binding inhibitor (GABA receptor modulator, acyl-CoA-binding protein) [Saprolegnia diclina VS20])

HSP 1 Score: 94.0 bits (232), Expect = 2.800e-16
Identity = 44/83 (53.01%), Postives = 56/83 (67.47%), Query Frame = 0
Query:    9 FEEAAKRIAAWKPAAKDPSDEEKLLIYALFKQSTVGDCNTPKPGLLDFTGRRKHGAWEKQKGKDKIAAMEAYIAEVERQISTY 92
            FE AA  I  W PA+  PS+++KL +YAL+KQ T GDCNT +PG+ D  G+ K  AW  +KG  K AA  AY+AEV RQ+ TY
Sbjct:    4 FEAAAAAIKNWNPAS-SPSNDDKLALYALYKQGTEGDCNTSRPGMFDLAGKAKWDAWNAKKGTSKEAAQAAYVAEVARQLETY 85          
BLAST of NO24G01960 vs. NCBI_GenBank
Match: XP_012195026.1 (hypothetical protein SPRG_01419 [Saprolegnia parasitica CBS 223.65] >KDO34177.1 hypothetical protein SPRG_01419 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 93.6 bits (231), Expect = 3.600e-16
Identity = 44/83 (53.01%), Postives = 56/83 (67.47%), Query Frame = 0
Query:    9 FEEAAKRIAAWKPAAKDPSDEEKLLIYALFKQSTVGDCNTPKPGLLDFTGRRKHGAWEKQKGKDKIAAMEAYIAEVERQISTY 92
            FE AA  I  W PA+  PS+++KL +YAL+KQ T GDCNT +PG+ D  G+ K  AW  +KG  K AA  AY+AEV RQ+ TY
Sbjct:    4 FEAAAAAIKNWSPAS-SPSNDDKLALYALYKQGTEGDCNTSRPGMFDLAGKAKWDAWNAKKGMSKEAAQAAYVAEVARQMETY 85          
BLAST of NO24G01960 vs. NCBI_GenBank
Match: XP_024142125.1 (acyl-CoA-binding protein [Oryzias melastigma])

HSP 1 Score: 93.6 bits (231), Expect = 3.600e-16
Identity = 48/89 (53.93%), Postives = 60/89 (67.42%), Query Frame = 0
Query:    4 ELQQRFEEAAKRIAAWKPAAKDPSDEEKLLIYALFKQSTVGDCNTPKPGLLDFTGRRKHGAWEKQKGKDKIAAMEAYIAEVERQISTYG 93
            ELQ +F+ AA  +   K     P+DEE LL+Y+LFKQ++VGD NT +PG+LDFTG+ K  AWEKQKGK K  AM+ YI  VE     YG
Sbjct:    3 ELQAQFDAAAAEV---KQLKAKPADEEMLLVYSLFKQASVGDVNTARPGMLDFTGKAKWDAWEKQKGKSKEDAMKEYIKLVEELKQKYG 88          
BLAST of NO24G01960 vs. NCBI_GenBank
Match: OQS01437.1 (acyl-CoA-binding-like protein [Achlya hypogyna])

HSP 1 Score: 93.2 bits (230), Expect = 4.700e-16
Identity = 44/83 (53.01%), Postives = 56/83 (67.47%), Query Frame = 0
Query:    9 FEEAAKRIAAWKPAAKDPSDEEKLLIYALFKQSTVGDCNTPKPGLLDFTGRRKHGAWEKQKGKDKIAAMEAYIAEVERQISTY 92
            FE AA  I  W PA+  PS+++KL +YAL+KQ T GDCNT +PG+ D  G+ K  AW  +KG  K AA  AY+AEV RQ+ TY
Sbjct:    4 FEAAAAAIKNWNPAS-SPSNDDKLALYALYKQGTEGDCNTSRPGMFDLAGKAKWDAWNAKKGMTKEAAQAAYVAEVARQMETY 85          
BLAST of NO24G01960 vs. NCBI_GenBank
Match: XP_004572007.1 (acyl-CoA-binding protein [Maylandia zebra] >XP_005751636.1 PREDICTED: acyl-CoA-binding protein [Pundamilia nyererei] >XP_005943457.1 PREDICTED: acyl-CoA-binding protein-like [Haplochromis burtoni])

HSP 1 Score: 92.8 bits (229), Expect = 6.100e-16
Identity = 48/89 (53.93%), Postives = 58/89 (65.17%), Query Frame = 0
Query:    4 ELQQRFEEAAKRIAAWKPAAKDPSDEEKLLIYALFKQSTVGDCNTPKPGLLDFTGRRKHGAWEKQKGKDKIAAMEAYIAEVERQISTYG 93
            ELQ +F+EAA  +   K     P+DEE L IY+LFKQ+TVGD NT +PG+ DFTG+ K  AWEKQKGK    AM  YI+ VE     YG
Sbjct:    3 ELQTKFDEAAAEV---KQLKAKPTDEEMLQIYSLFKQATVGDVNTARPGMFDFTGKAKWDAWEKQKGKSNENAMNEYISLVEELKQKYG 88          
The following BLAST results are available for this feature:
BLAST of NO24G01960 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
BAN20520.11.500e-1758.62diazepam binding inhibitor, putative [Riptortus pe... [more]
AHJ25685.11.500e-1755.17acyl-CoA-binding protein [Macrobrachium nipponense... [more]
AEP84099.14.300e-1751.65acyl-CoA-binding protein [Penaeus monodon][more]
ACU82846.19.500e-1750.55acyl-CoA-binding protein [Fenneropenaeus chinensis... [more]
XP_003456254.11.600e-1655.06PREDICTED: acyl-CoA-binding protein isoform X2 [Or... [more]
XP_008612064.12.800e-1653.01diazepam-binding inhibitor (GABA receptor modulato... [more]
XP_012195026.13.600e-1653.01hypothetical protein SPRG_01419 [Saprolegnia paras... [more]
XP_024142125.13.600e-1653.93acyl-CoA-binding protein [Oryzias melastigma][more]
OQS01437.14.700e-1653.01acyl-CoA-binding-like protein [Achlya hypogyna][more]
XP_004572007.16.100e-1653.93acyl-CoA-binding protein [Maylandia zebra] >XP_005... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G01960.1NO24G01960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598700gene_7421Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G01960.1NO24G01960.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G01960 ID=NO24G01960|Name=NO24G01960|organism=Nannochloropsis oceanica|type=gene|length=613bp
ATGAGCGGCGAGCTCCAGCAGCGTTTTGAGGAAGCAGCCAAGgtgtatat
ggggaggagggagggtttggaaaggagggatgacggggggaggcaggcta
gggtggaacatttcctctgcaacctgccgctgctgccccaactgtcgagt
gggccgtagagattgaatggtaagtccttggctactcttctctttctcac
acatacacacattcacacaccactcttagCGCATCGCTGCCTGGAAGCCC
GCGGCCAAGGACCCTAGCGACGAGGAGAAGTTGCTCATCTATGCTTTGTT
CAAGCAGTCTACCGTCGGGGATTGCAACACCCCTAAgtaagtgtttaaga
ccgaggagggggaagaggagatggatatttaagcagaagaagaatggcta
tgattgaggatcgcagggtcgtgtgtatggtcgctcacttctcctctccc
ctcttcctctctcccacgccccagGCCAGGCCTCCTCGACTTCACCGGAC
GGCGTAAACACGGCGCGTGGGAGAAGCAAAAGGGTAAGGACAAGATAGCT
GCCATGGAGGCTTACATTGCCGAGGTGGAGCGACAGATCAGCACGTACGG
CACCAAGGCATAA
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protein sequence of NO24G01960.1

>NO24G01960.1-protein ID=NO24G01960.1-protein|Name=NO24G01960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=96bp
MSGELQQRFEEAAKRIAAWKPAAKDPSDEEKLLIYALFKQSTVGDCNTPK
PGLLDFTGRRKHGAWEKQKGKDKIAAMEAYIAEVERQISTYGTKA*
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Synonyms
Publications