NO24G01910, NO24G01910 (gene) Nannochloropsis oceanica

Overview
NameNO24G01910
Unique NameNO24G01910
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1669
Alignment locationchr24:505573..507241 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:505573..507241 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009563SSSCA1
Homology
The following BLAST results are available for this feature:
BLAST of NO24G01910 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL040nonsL040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002798NSK002798Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G01910.1NO24G01910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|641119gene_7416Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G01910.1NO24G01910.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G01910 ID=NO24G01910|Name=NO24G01910|organism=Nannochloropsis oceanica|type=gene|length=1669bp
ATGGCGACCTCCCCCCGTGTCCCCGTCGCCTTTCTCTCCAACCCTCAACA
GCCCACCCCTTCTTCCCCGTCCCCCTGCCACTCCAACAAGCAACGCATCA
TGACCGACATTGCCCAGCGGTTGCAAGAGGGCTGGAAACTTACCTCTGAC
ATCTGTCCCATACCTGGATGCAAAACCCCCTTGGTCGCCTCCCCTCTCTC
AGATGGTCAGCATTTATTTTGCGTCGCATGTCAAGCCCCAGTCCTGAGGG
AAGGGGAGACCTTACCCCCTCCCTTGAGCGCTGCTGTTCCTCCTGGTACT
GCGGCTGTTCCTGCCGTTGCTTCTGCCAATCAAGTCTCTTGTTCTCCTCC
TCCCTCCGTCGTGGTGCCACCCACATCGGCCGTCTCAGAAACCCCTGTCA
TTGTCACTCCTTTTTGTACCACACCCACCACTGCTACCACGACCACCACC
ACCATAAGCAGCAGCAGCAGCAGCAGCAACTTCCTCCCTACTCCTCTCAC
CACAACAGACACTGACGCCGCCATCGCCACAGCCGCTGCTGCTCGAACAG
TGCAAGCACGACGCGACGCCGCGTCGTCAATAATCGGACAAAGAATGCTG
AGCGGGTGGACGATGCGTGCCGAGAGTTGTCCCGACTGTCATGTGCCCTT
GATGAGTCAAGGAGGCGGGGAGAAAGGTGGTGTGTGGGAATGCGTGGCGT
GTGGAGGGAGATTTGGGCCGGGAGGGTTGGAGGCGGAAGAAGTGGTGGAG
GAGAAGGAGGAGGAGGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGCGGTGGAGAAAAAGGACGTGAGTGTAGAGATTGGCCAGAGAT
TGTTGCAAGGGTGGACGCTACTAGCTGAAGCGTGCATGGAATGTGCGATC
CCCTTCATGAGGGATGGGGAGGGGGAGAATCGCTGCTTGGGCTGTGGTGA
TGGACAACAACAGCAGCAGCAGGAGCAGTGGAGTAGAGGAGGGCAGAAGG
GAGTGAAGGAAGAGGACAGGGAGGACGAGCAGGAGGAGGAGAACGATGAC
GAGGACGAGGACGAGGAAGCAACAGCTGTACAAGCCGCGCTCATCGCTGC
AGCTTCGCGAGCGACCTCTTCCTCCCTCCCTTCCTCGCCCTTATCCTCCT
CATTGCCTTCCTCGAAAGCGGTTCCCATGGCACTTGAAGCGATATACCAG
CGGGTCAATGGGTTAGTTAATGTGTTGGAAAGGACGCATGTGGGTGGGTA
CGAGGAAACGGCGAGGATTGCCATGGCTTTGACAAGGTTGGGAGAGGCGG
CAGAAGTGATGGAGAGGTGTGTGCAGCAACAGCAGCAGCGGCAGCAGCAG
CAGCAGCAGCAGCTACAGCAGGAGAAGGAGCAGGAAAATGTAAAGGTACC
GCCTAAGAGGAGTAGGGTTGGCTGATGGGTAAGGGAGCAGGAGAAGAGGA
GGAGAAGAAGAGGAGAAGAGGAGGAGGAGGAGGAGGATAAAGAAGAGTAG
GAGGAGTTTTATTGTGGTAAAGTGGAGATGAAGTAGAAGCAAAAGAGATT
CATGTAGTCATTAGAGGGGAAAATAGATCGTCAAGGAGAGACGAAAGAGA
CAGAGAAGGATGAGATAAGGTAAGGGGGGAAATGAGAAGACGAGGGAACC
AAGAGATAATGCGTTAGAC
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protein sequence of NO24G01910.1

>NO24G01910.1-protein ID=NO24G01910.1-protein|Name=NO24G01910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=475bp
MATSPRVPVAFLSNPQQPTPSSPSPCHSNKQRIMTDIAQRLQEGWKLTSD
ICPIPGCKTPLVASPLSDGQHLFCVACQAPVLREGETLPPPLSAAVPPGT
AAVPAVASANQVSCSPPPSVVVPPTSAVSETPVIVTPFCTTPTTATTTTT
TISSSSSSSNFLPTPLTTTDTDAAIATAAAARTVQARRDAASSIIGQRML
SGWTMRAESCPDCHVPLMSQGGGEKGGVWECVACGGRFGPGGLEAEEVVE
EKEEEEEEEEEEEEEEEEEAVEKKDVSVEIGQRLLQGWTLLAEACMECAI
PFMRDGEGENRCLGCGDGQQQQQQEQWSRGGQKGVKEEDREDEQEEENDD
EDEDEEATAVQAALIAAASRATSSSLPSSPLSSSLPSSKAVPMALEAIYQ
RVNGLVNVLERTHVGGYEETARIAMALTRLGEAAEVMERCVQQQQQRQQQ
QQQQLQQEKEQENVKVPPKRSRVG*
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Synonyms
Publications