NO24G01880, NO24G01880 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO24G01880
Unique Name	NO24G01880
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3579
Alignment location	chr24:499436..503014 -

Link to JBrowse

Properties


Property Name	Value
Description	Ubiquitin carboxyl-terminal hydrolase MINDY-1

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr24	genome	chr24:499436..503014 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0004843	thiol-dependent ubiquitin-specific protease activity
GO:1990380	Lys48-specific deubiquitinase activity
GO:1990380	Lys48-specific deubiquitinase activity
GO:0004843	thiol-dependent ubiquitin-specific protease activity

Vocabulary: **INTERPRO**
Term	Definition
IPR007518	MINDY
IPR033979	MINDY_domain

Vocabulary: **Biological Process**
Term	Definition
GO:0071108	protein K48-linked deubiquitination
GO:0006508	proteolysis

Homology

[Close]

BLAST of NO24G01880 vs. NCBI_GenBank
Match: XP_013090956.1 (PREDICTED: protein FAM63A-like isoform X1 [Biomphalaria glabrata] >XP_013090957.1 PREDICTED: protein FAM63A-like isoform X1 [Biomphalaria glabrata] >XP_013090958.1 PREDICTED: protein FAM63A-like isoform X1 [Biomphalaria glabrata] >XP_013090959.1 PREDICTED: protein FAM63A-like isoform X1 [Biomphalaria glabrata] >XP_013090960.1 PREDICTED: protein FAM63A-like isoform X1 [Biomphalaria glabrata])

HSP 1 Score: 149.1 bits (375), Expect = 3.900e-32
Identity = 104/352 (29.55%), Postives = 159/352 (45.17%), Query Frame = 0

Query:    5 PRSAASASASPLVFPTKRIPFGPHGRLVPILLQNEAGPCPLLAVANILLLQRQLDVDPEYTKVSLIDILTGIANRVLEATSTAAKAASTADAVAFEAPGGGDEIAKAVGGHADKHVAYQVDEVIHLLPRLRHGMDVNVRFTDVAAFEPTVELSVFDALGIRLFHGWVVGEEDEDEEGREGGVLAQVVGNMTYNQVMEKLVAMKEGGRERRRQKGEMDRGEGKRASSQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATESLSLLEDFLLRTPGQLTLRGLSLLHSTVRENELCGLFHHNHFSVLLKKGGRLYLLVTDEGYKEEAHVVWARLDGVSGAGELVDGLFR 357
            P SA + S    V+  K I FG +   VPI+ QNE GPCPLLA+ N+LLL+ ++ + P    ++   ++T +   +L                        D + + +   +  +    + + + ++ +L+ G+DVNV+FT VA FE T EL +FD L I L+HGW+V  +D +          ++V   +YNQ++EK++ +K    +                                                       T++L + E FL RT  QLT  GL  L S V+ENE C  F +NHFS L K    ++LLVTD+G+  E++VVW  L  V G     D  FR
Sbjct:  211 PCSALTKSDQESVYYIKWITFGQNN--VPIITQNENGPCPLLAIMNVLLLKGKVKLAPMLEMITSEQLMTHLGECIL------------------------DNMPQNLSQTSQANYEQNMQDAMSVMHKLQTGLDVNVKFTGVADFEYTPELIIFDLLEISLYHGWLVDPQDSE--------TVKIVNQDSYNQLVEKIIFLKHADNQE----------------------------------------------------DVTQAL-IAEQFLDRTASQLTYHGLCELASVVKENEPCVFFRNNHFSTLYKHNNEMFLLVTDQGFLTESNVVWETLSTVDGDCHFTDATFR 475

[Close]

BLAST of NO24G01880 vs. NCBI_GenBank
Match: XP_013090961.1 (PREDICTED: protein FAM63A-like isoform X2 [Biomphalaria glabrata])

HSP 1 Score: 149.1 bits (375), Expect = 3.900e-32
Identity = 104/352 (29.55%), Postives = 159/352 (45.17%), Query Frame = 0

Query:    5 PRSAASASASPLVFPTKRIPFGPHGRLVPILLQNEAGPCPLLAVANILLLQRQLDVDPEYTKVSLIDILTGIANRVLEATSTAAKAASTADAVAFEAPGGGDEIAKAVGGHADKHVAYQVDEVIHLLPRLRHGMDVNVRFTDVAAFEPTVELSVFDALGIRLFHGWVVGEEDEDEEGREGGVLAQVVGNMTYNQVMEKLVAMKEGGRERRRQKGEMDRGEGKRASSQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATESLSLLEDFLLRTPGQLTLRGLSLLHSTVRENELCGLFHHNHFSVLLKKGGRLYLLVTDEGYKEEAHVVWARLDGVSGAGELVDGLFR 357
            P SA + S    V+  K I FG +   VPI+ QNE GPCPLLA+ N+LLL+ ++ + P    ++   ++T +   +L                        D + + +   +  +    + + + ++ +L+ G+DVNV+FT VA FE T EL +FD L I L+HGW+V  +D +          ++V   +YNQ++EK++ +K    +                                                       T++L + E FL RT  QLT  GL  L S V+ENE C  F +NHFS L K    ++LLVTD+G+  E++VVW  L  V G     D  FR
Sbjct:  211 PCSALTKSDQESVYYIKWITFGQNN--VPIITQNENGPCPLLAIMNVLLLKGKVKLAPMLEMITSEQLMTHLGECIL------------------------DNMPQNLSQTSQANYEQNMQDAMSVMHKLQTGLDVNVKFTGVADFEYTPELIIFDLLEISLYHGWLVDPQDSE--------TVKIVNQDSYNQLVEKIIFLKHADNQE----------------------------------------------------DVTQAL-IAEQFLDRTASQLTYHGLCELASVVKENEPCVFFRNNHFSTLYKHNNEMFLLVTDQGFLTESNVVWETLSTVDGDCHFTDATFR 475

[Close]

BLAST of NO24G01880 vs. NCBI_GenBank
Match: CBJ26587.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 148.3 bits (373), Expect = 6.600e-32
Identity = 120/422 (28.44%), Postives = 168/422 (39.81%), Query Frame = 0

Query:   21 KRIPFGPHGRLVPILLQNEAGPCPLLAVANILLLQRQLDVDPEYTKVSLIDILTGIANRVLEATSTAAKAASTADAVAFEAPGGGDEIAKAVGGHADKHVAYQVDEVIHLLPRLRHGMDVNVRFTDVAAFEPTVELSVFDALGIRLFHGWVVGEEDEDEEGREGGVLAQVVGNMTYNQVMEKLVAMKE-----------------------------------GGRERRRQKGEMDRG---------------------------------------------EGKRASS----QKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATESLSLLEDFLLRTPGQLTLRGLSLLHSTVRENELCGLFHHNHFSVLLKKGGRLYLLVTDEGYKEEAHVVWARLDGVSGAGELVDGLFRPA 359
            KR+ F   GR VPIL QN  GPCPLLA+ NILLLQ  + + P+ +++S  ++   +A  +L++                  P   DE         + +   Q+D VI LLPRL++G+DVNVRF  V  FE T E++ FD  G+ L HGW++  ED+            V+  M+YN+++EKL+  +                                    G     +  GE D G                                             EG  ++S    Q+                                  A     + E+F   T  QLT  GLS LH  VRE +LC  F +NHFS + K  G+LYLL+TD GY  E+ VVW +LD + G  E  D  F P+
Sbjct:   10 KRVRF--FGRKVPILCQNLNGPCPLLAIGNILLLQSNISIHPDLSEISFSELTQLVAGFLLDSN-----------------PPHEDE-------RINVNQQTQLDTVIKLLPRLQYGLDVNVRFNSVRGFEFTEEMAAFDMSGVTLLHGWILDPEDKH--------TGSVIEGMSYNKLVEKLLEFRSLTVEASGPRKQDFDNVGARQNVPSDKSESNDHQEAGSTNFAKTAGEEDAGTQAQLVTKPLQTAQSVGAVVVDDASEPLGENAPTPVRRSEEDTGQEGLSSASTITRQQGSESILHREEGLPTDKCARASSVTSETESDKMATALNEGQVAEEFFRETASQLTYYGLSQLHQEVRERQLCVFFRNNHFSTMFKYEGKLYLLITDLGYARESSVVWEKLDQIDGNTEYADSDFGPS 397

[Close]

BLAST of NO24G01880 vs. NCBI_GenBank
Match: XP_010786309.1 (PREDICTED: protein FAM63B [Notothenia coriiceps])

HSP 1 Score: 147.9 bits (372), Expect = 8.700e-32
Identity = 104/324 (32.10%), Postives = 149/324 (45.99%), Query Frame = 0

Query:   33 PILLQNEAGPCPLLAVANILLLQRQLDVDPEYTKVSLIDILTGIANRVLEATSTAAKAASTADAVAFEAPGGGDEIAKAVGGHADKHVAYQVDEVIHLLPRLRHGMDVNVRFTDVAAFEPTVELSVFDALGIRLFHGWVVGEEDEDEEGREGGVLAQVVGNMTYNQVMEKLVAMKEGGRERRRQKGEMDRGEGKRASSQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATESLSLLEDFLLRTPGQLTLRGLSLLHSTVRENELCGLFHHNHFSVLLKKGGRLYLLVTDEGYKEEAHVVWARLDGVSGAGELVDGLFR 357
            PI+ QNE GPCPLLA+ N+LLL  ++ + P    +++  ++  + + +LE   T  K  S A  + +E                       + + + +L +L+ G+DVNV+FT V  FE T E  VFD L I L+HGW+V  + +D        + + VGN +YNQ++EK+++ K+              GEG                                               + E FL  T  QLT  GL  L STV+E ELC  F +NHFS ++K  G+LYLLVTD+G+  E  VVW  L  V G G   D  FR
Sbjct:  277 PIITQNENGPCPLLAIMNVLLLAWKVKMPPMMEIITVEQLMEYLGDYILE---TKPKEISEAQRLNYE---------------------QNMSDAMAVLHKLQTGLDVNVKFTGVQVFEYTPECIVFDLLDIPLYHGWLVDPQMQD--------IVKAVGNCSYNQLVEKIISCKQSDNSEL-------AGEG----------------------------------------------IVAEQFLSSTATQLTYHGLCELTSTVQEGELCVFFRNNHFSTMIKYKGQLYLLVTDQGFLTEEKVVWESLHNVDGDGNFCDSEFR 515

[Close]

BLAST of NO24G01880 vs. NCBI_GenBank
Match: XP_020481398.1 (ubiquitin carboxyl-terminal hydrolase MINDY-2 isoform X2 [Labrus bergylta])

HSP 1 Score: 147.5 bits (371), Expect = 1.100e-31
Identity = 105/324 (32.41%), Postives = 150/324 (46.30%), Query Frame = 0

Query:   33 PILLQNEAGPCPLLAVANILLLQRQLDVDPEYTKVSLIDILTGIANRVLEATSTAAKAASTADAVAFEAPGGGDEIAKAVGGHADKHVAYQVDEVIHLLPRLRHGMDVNVRFTDVAAFEPTVELSVFDALGIRLFHGWVVGEEDEDEEGREGGVLAQVVGNMTYNQVMEKLVAMKEGGRERRRQKGEMDRGEGKRASSQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATESLSLLEDFLLRTPGQLTLRGLSLLHSTVRENELCGLFHHNHFSVLLKKGGRLYLLVTDEGYKEEAHVVWARLDGVSGAGELVDGLFR 357
            PI+ QNE GPCPLLA+ N+LLL  ++ + P    ++   ++  + + +LE   T  K  S A  + +E                       + + + +L +L+ G+DVNV+FT V  FE T E  VFD L I L+HGW+V  +  D        + + VGN +YNQ++EK+++ K+       +  E+  GEG                                               + E FL  T  QLT  GL  L STV+E ELC  F +NHFS ++K  G+LYLLVTD+G+  E  VVW  L  V G G   D  FR
Sbjct:  283 PIITQNENGPCPLLAIMNVLLLAWKVKMPPMMEIITAEQLMEYLGDYILE---TKPKEISEAQRLNYE---------------------QNMSDAMAVLHKLQTGLDVNVKFTGVRVFEYTPECIVFDLLDIPLYHGWLVDPQMHD--------IVKAVGNCSYNQLVEKIISCKQS------ENSEL-AGEG----------------------------------------------IVAEQFLSSTATQLTYHGLCELTSTVQEGELCVFFRNNHFSTMIKYKGQLYLLVTDQGFLTEEKVVWESLHNVDGDGNFCDSEFR 521

[Close]

BLAST of NO24G01880 vs. NCBI_GenBank
Match: XP_020481393.1 (ubiquitin carboxyl-terminal hydrolase MINDY-2 isoform X1 [Labrus bergylta])

HSP 1 Score: 147.5 bits (371), Expect = 1.100e-31
Identity = 105/324 (32.41%), Postives = 150/324 (46.30%), Query Frame = 0

Query:   33 PILLQNEAGPCPLLAVANILLLQRQLDVDPEYTKVSLIDILTGIANRVLEATSTAAKAASTADAVAFEAPGGGDEIAKAVGGHADKHVAYQVDEVIHLLPRLRHGMDVNVRFTDVAAFEPTVELSVFDALGIRLFHGWVVGEEDEDEEGREGGVLAQVVGNMTYNQVMEKLVAMKEGGRERRRQKGEMDRGEGKRASSQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATESLSLLEDFLLRTPGQLTLRGLSLLHSTVRENELCGLFHHNHFSVLLKKGGRLYLLVTDEGYKEEAHVVWARLDGVSGAGELVDGLFR 357
            PI+ QNE GPCPLLA+ N+LLL  ++ + P    ++   ++  + + +LE   T  K  S A  + +E                       + + + +L +L+ G+DVNV+FT V  FE T E  VFD L I L+HGW+V  +  D        + + VGN +YNQ++EK+++ K+       +  E+  GEG                                               + E FL  T  QLT  GL  L STV+E ELC  F +NHFS ++K  G+LYLLVTD+G+  E  VVW  L  V G G   D  FR
Sbjct:  283 PIITQNENGPCPLLAIMNVLLLAWKVKMPPMMEIITAEQLMEYLGDYILE---TKPKEISEAQRLNYE---------------------QNMSDAMAVLHKLQTGLDVNVKFTGVRVFEYTPECIVFDLLDIPLYHGWLVDPQMHD--------IVKAVGNCSYNQLVEKIISCKQS------ENSEL-AGEG----------------------------------------------IVAEQFLSSTATQLTYHGLCELTSTVQEGELCVFFRNNHFSTMIKYKGQLYLLVTDQGFLTEEKVVWESLHNVDGDGNFCDSEFR 521

[Close]

BLAST of NO24G01880 vs. NCBI_GenBank
Match: XP_008308257.1 (PREDICTED: protein FAM63B [Cynoglossus semilaevis])

HSP 1 Score: 147.1 bits (370), Expect = 1.500e-31
Identity = 104/324 (32.10%), Postives = 148/324 (45.68%), Query Frame = 0

Query:   33 PILLQNEAGPCPLLAVANILLLQRQLDVDPEYTKVSLIDILTGIANRVLEATSTAAKAASTADAVAFEAPGGGDEIAKAVGGHADKHVAYQVDEVIHLLPRLRHGMDVNVRFTDVAAFEPTVELSVFDALGIRLFHGWVVGEEDEDEEGREGGVLAQVVGNMTYNQVMEKLVAMKEGGRERRRQKGEMDRGEGKRASSQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATESLSLLEDFLLRTPGQLTLRGLSLLHSTVRENELCGLFHHNHFSVLLKKGGRLYLLVTDEGYKEEAHVVWARLDGVSGAGELVDGLFR 357
            PI+ QNE GPCPLLA+ N+LLL  ++ + P    ++   ++  + + +LE   T  K  S A  + +E                       + + + +L +L+ G+DVNV+FT V  FE T E  VFD L I L+HGW+V  + +D        + + VGN +YNQ++EK+++ K+              GEG                                               + E FL  T  QLT  GL  L STV+E ELC  F +NHFS ++K  G+LYLLVTD+G+  E  VVW  L  V G G   D  FR
Sbjct:  281 PIITQNENGPCPLLAIMNVLLLAWKVKMPPMMEIITAEQLMEYLGDYILE---TKPKEISEAQRLNYE---------------------QNMSDAMAVLHKLQTGLDVNVKFTGVRVFEYTPECIVFDLLDIPLYHGWLVDPQMQD--------IVKAVGNCSYNQLVEKIISCKQSDNSEL-------AGEG----------------------------------------------IVAEQFLSSTATQLTYHGLCELTSTVQEGELCVFFRNNHFSTMIKYKGQLYLLVTDQGFLTEEKVVWESLHNVDGDGNFCDSEFR 519

[Close]

BLAST of NO24G01880 vs. NCBI_GenBank
Match: XP_020797125.1 (ubiquitin carboxyl-terminal hydrolase MINDY-2 [Boleophthalmus pectinirostris])

HSP 1 Score: 147.1 bits (370), Expect = 1.500e-31
Identity = 104/324 (32.10%), Postives = 148/324 (45.68%), Query Frame = 0

Query:   33 PILLQNEAGPCPLLAVANILLLQRQLDVDPEYTKVSLIDILTGIANRVLEATSTAAKAASTADAVAFEAPGGGDEIAKAVGGHADKHVAYQVDEVIHLLPRLRHGMDVNVRFTDVAAFEPTVELSVFDALGIRLFHGWVVGEEDEDEEGREGGVLAQVVGNMTYNQVMEKLVAMKEGGRERRRQKGEMDRGEGKRASSQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATESLSLLEDFLLRTPGQLTLRGLSLLHSTVRENELCGLFHHNHFSVLLKKGGRLYLLVTDEGYKEEAHVVWARLDGVSGAGELVDGLFR 357
            PI+ QNE GPCPLLA+ N+LLL  ++ + P    ++   ++  + + +LE   T  K  S A  + +E                       + + + +L +L+ G+DVNV+FT V  FE T E  VFD L I L+HGW+V  + +D        + + VGN +YNQ++EK+++ K+              GEG                                               + E FL  T  QLT  GL  L STV+E ELC  F +NHFS ++K  G+LYLLVTD+G+  E  VVW  L  V G G   D  FR
Sbjct:  276 PIITQNENGPCPLLAIMNVLLLAWKVKMPPMMEIITAEQLMEYLGDYILE---TKPKEISEAQRLNYE---------------------QNMSDAMAVLHKLQTGLDVNVKFTGVRVFEYTPECIVFDLLDIPLYHGWLVDPQMQD--------IVKAVGNCSYNQLVEKIISCKQSDNSEL-------AGEG----------------------------------------------IVAEQFLSSTATQLTYHGLCELTSTVQEGELCVFFRNNHFSTMIKYKGQLYLLVTDQGFLTEEKVVWESLHNVDGDGNFCDSEFR 514

[Close]

BLAST of NO24G01880 vs. NCBI_GenBank
Match: XP_004067372.1 (ubiquitin carboxyl-terminal hydrolase MINDY-2 isoform X1 [Oryzias latipes])

HSP 1 Score: 146.7 bits (369), Expect = 1.900e-31
Identity = 102/324 (31.48%), Postives = 148/324 (45.68%), Query Frame = 0

Query:   33 PILLQNEAGPCPLLAVANILLLQRQLDVDPEYTKVSLIDILTGIANRVLEATSTAAKAASTADAVAFEAPGGGDEIAKAVGGHADKHVAYQVDEVIHLLPRLRHGMDVNVRFTDVAAFEPTVELSVFDALGIRLFHGWVVGEEDEDEEGREGGVLAQVVGNMTYNQVMEKLVAMKEGGRERRRQKGEMDRGEGKRASSQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATESLSLLEDFLLRTPGQLTLRGLSLLHSTVRENELCGLFHHNHFSVLLKKGGRLYLLVTDEGYKEEAHVVWARLDGVSGAGELVDGLFR 357
            P++ QNE GPCPLLA+ N+L+L  ++ + P    ++   ++  + + +LE   T  K  S A  + +E                       + + + +L +L+ G+DVNV+FT V  FE T E  VFD L I L+HGW+V  + +D        + + VGN +YNQ++EK+++ K+              GEG                                               + E FL  T  QLT  GL  L STV+E ELC  F +NHFS ++K  G+LYLLVTD+G+  E  VVW  L  V G G   D  FR
Sbjct:  275 PVITQNENGPCPLLAIMNVLMLAGKVKMPPMMEIITAEQLMEYLGDYILE---TKPKEISEAQRLNYE---------------------QNMSDAMAVLHKLQTGLDVNVKFTGVRVFEYTPECIVFDLLDIPLYHGWLVDPQMQD--------IVKAVGNCSYNQLVEKIISCKQSDNSEL-------AGEG----------------------------------------------IVAEQFLSSTATQLTYHGLCELTSTVQEGELCVFFRNNHFSTMIKHKGQLYLLVTDQGFLTEEKVVWESLHNVDGDGNFCDSEFR 513

[Close]

BLAST of NO24G01880 vs. NCBI_GenBank
Match: XP_011489597.1 (ubiquitin carboxyl-terminal hydrolase MINDY-2 isoform X2 [Oryzias latipes])

HSP 1 Score: 146.7 bits (369), Expect = 1.900e-31
Identity = 102/324 (31.48%), Postives = 148/324 (45.68%), Query Frame = 0

Query:   33 PILLQNEAGPCPLLAVANILLLQRQLDVDPEYTKVSLIDILTGIANRVLEATSTAAKAASTADAVAFEAPGGGDEIAKAVGGHADKHVAYQVDEVIHLLPRLRHGMDVNVRFTDVAAFEPTVELSVFDALGIRLFHGWVVGEEDEDEEGREGGVLAQVVGNMTYNQVMEKLVAMKEGGRERRRQKGEMDRGEGKRASSQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATESLSLLEDFLLRTPGQLTLRGLSLLHSTVRENELCGLFHHNHFSVLLKKGGRLYLLVTDEGYKEEAHVVWARLDGVSGAGELVDGLFR 357
            P++ QNE GPCPLLA+ N+L+L  ++ + P    ++   ++  + + +LE   T  K  S A  + +E                       + + + +L +L+ G+DVNV+FT V  FE T E  VFD L I L+HGW+V  + +D        + + VGN +YNQ++EK+++ K+              GEG                                               + E FL  T  QLT  GL  L STV+E ELC  F +NHFS ++K  G+LYLLVTD+G+  E  VVW  L  V G G   D  FR
Sbjct:  241 PVITQNENGPCPLLAIMNVLMLAGKVKMPPMMEIITAEQLMEYLGDYILE---TKPKEISEAQRLNYE---------------------QNMSDAMAVLHKLQTGLDVNVKFTGVRVFEYTPECIVFDLLDIPLYHGWLVDPQMQD--------IVKAVGNCSYNQLVEKIISCKQSDNSEL-------AGEG----------------------------------------------IVAEQFLSSTATQLTYHGLCELTSTVQEGELCVFFRNNHFSTMIKHKGQLYLLVTDQGFLTEEKVVWESLHNVDGDGNFCDSEFR 479

The following BLAST results are available for this feature:

BLAST of NO24G01880 vs. NCBI_GenBank

BLAST of NO24G01880 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
XP_013090956.1	3.900e-32	29.55	PREDICTED: protein FAM63A-like isoform X1 [Biompha...	[more]
XP_013090961.1	3.900e-32	29.55	PREDICTED: protein FAM63A-like isoform X2 [Biompha...	[more]
CBJ26587.1	6.600e-32	28.44	conserved unknown protein [Ectocarpus siliculosus]	[more]
XP_010786309.1	8.700e-32	32.10	PREDICTED: protein FAM63B [Notothenia coriiceps]	[more]
XP_020481398.1	1.100e-31	32.41	ubiquitin carboxyl-terminal hydrolase MINDY-2 isof...	[more]
XP_020481393.1	1.100e-31	32.41	ubiquitin carboxyl-terminal hydrolase MINDY-2 isof...	[more]
XP_008308257.1	1.500e-31	32.10	PREDICTED: protein FAM63B [Cynoglossus semilaevis]	[more]
XP_020797125.1	1.500e-31	32.10	ubiquitin carboxyl-terminal hydrolase MINDY-2 [Bol...	[more]
XP_004067372.1	1.900e-31	31.48	ubiquitin carboxyl-terminal hydrolase MINDY-2 isof...	[more]
XP_011489597.1	1.900e-31	31.48	ubiquitin carboxyl-terminal hydrolase MINDY-2 isof...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL040	nonsL040	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR030	ncniR030	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR027	ngnoR027	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO24G01880.1	NO24G01880.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO24G01880.1	NO24G01880.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO24G01880 ID=NO24G01880|Name=NO24G01880|organism=Nannochloropsis oceanica|type=gene|length=3579bp
TCCCTCCCTCTCGACTCCCTCTCCTCGGCTCGTTCGCCCACCCATACGCC
TTCATCTTTCCGACCCTAATTTTATACAAATATATATAATAAATGACACA
TACTCGTATAGATATTCCTTTCCTCCCTCCCCTCCACTCTAAAAAGGCGT
CATTCCTCCTCCCCTCTCACCCCCTCCTCCCATCCCTCCACCTCCTATCC
CTGCAACCCCTATCCCTCCCCCCTACCCATCCCTCCTCCTCCTCCTAATC
CTCCTCCTAGAGGCGCTGCTGCTGTTCCTCCTCCCGCTCCCCCTCCTCCT
CCTCCTCCTCCCCAACCAAAAATAGCAGGCAGGCTCATCTGTATTAATCG
TTTCAAAATCGCCTTCCTTCCCCTCGTCACAGTCACCTCGAACATCTCCT
CCGCCTCCATCGAGAAATGGAAGATCCAATCCCCCGTCGATGTGGGGATG
ATCTTTATCTCCCTCGGTGGCATCGGCATCCCTCCCCTCCCCCTCCCCCT
CCGCCCCCTGAACGACGGAATATGAGCTCTTCTGTCGGGCCACTGTCAAG
CATAAGCCCGATCTCCTCTGCCGTCAGGGAGAGCCTTTTTGTCCCCTTCC
ATTCATACGCACCACTTGGGCCCTTCTTCGTAAATTCTACGAGCAACCGC
GCATTGTTCTTGTAGTTAAGAGTGCCTCCTCCTCCGCCTCCTCCTCCGCC
TCCTCCTCCGCCTCCTCCTCCAGGTGGAGAGCCACCACCACCACCGCCCA
CCCCCCCCGGGTTGTTGGTAGGTGGTCAGGCGAAACTTGAGCATGCAGTT
CTCGCCAAAGACGACGAAGTCAGGGTCACTCCTCTGATTGGTAGGGAAGG
CATTATTGCCCATATCGGAGAAGGATGATGTGGAAAAGGTTACGGAGGAG
GGGGAGGAAGAGGAGGAGGGGAAGGAGGAGGAGGAGGAAAAGGAGATACC
GCGTAGAGTAGAGGAATAGGTACAAGGGAGGGAGGAAAGGAAGCAGGTGG
CGCTGCTGTTCTTGTGGGTACTCGTACAGGGCTTCCGTTGCATCAGTACT
ATGTTTCGTTGCTGTTGCTGCTGCTGCTGCTGCTGCTGGGCTGCAGGAAG
CCGGAAGAATCGAGAATTTACAGTCTGGGCGCTGCTGCTGCTCCTGGTGC
CGCTACGGAGAAGAAGCATGGTGCTGCCTGTAACAATTTGTGGTGATCGT
AAGGTAGTGGGGAAAAAGCGTGTGACCGCCGTGACGCTGCATCGCTGAAT
CGTTTGGCCGGGACACTGAGACGTGCTGTGATAGCGTGCGGCAGCATGCT
TCTGCCTTTGTCCTAACTACCATGTATAGATTCAGTAATACTGCACCCCT
GAGCTGGCCGACACTGCATTTTAATTAAATAGCTTCGCTTTGCAGGTGGG
GAGGTTGTCGTCGCTTCTCCCAATGGGATCAGTCACGACAAGTTCTATAA
TTTCACCCTAGACGACACTGTCCAAAAAGTCACCAAGCGACTTGCAGATC
AAAAAAGGATAGGACTGCTAGTAAGTCTGGTGCTTGCTTGCTTGGCTGTG
TATGGCATGATTATTATTATCATTATGAAATTACTTTTTTCGATTTTTCT
GTAAGATCGATAGCGACCCTTGTTAAGCCTCTTGACATGTCAAAATATTT
CATATTTCATGGCGTCGTCTAAACCCATTGACATGTCTGAAAAGGAAGTG
AGGATCGTTGGGACAGGGCTCTAAATTCAATCAACCTCTCCTCGTTGCCT
TGCCTCATCATCAGGGGGGATTCCTTGTCATCATAATTGCATCTACACGT
ACCCACGTACAATTACAGGACCAAATGTTGTTGACCCCTCGCTCCGCCGC
CTCCGCCTCCGCCTCCCCTCTCGTCTTCCCCACAAAACGTATTCCCTTTG
GTCCCCACGGCCGGCTTGTCCCTATCCTCTTGCAAAACGAGGCCGGGCCG
TGCCCATTGCTTGCCGTGGCCAACATTCTCCTCCTTCAACGGCAGCTGGA
CGTGGACCCGGAGTACACAAAGGTGTCTCTGATTGACATACTGACGGGCA
TTGCAAATCGTGTCTTGGAGGCTACCTCGACCGCTGCGAAAGCGGCCAGT
ACTGCTGATGCCGTTGCCTTTGAGGCTCCTGGGGGTGGCGACGAGATTGC
AAAGGCTGTCGGGGGACATGCCGATAAGgtgagttatgcggtaacgcttc
tcgatactctgtctatctcacacaaacaacaagagtcaatcctcgctcga
ctgcatcctgttctcattcacctcatcctccctccctcgctccctccctc
cctctcctccctgcagCATGTTGCTTATCAAGTCGACGAGGTCATTCACC
TTCTTCCTCGCTTGCGACATGGTATGGACGTAAACGTCCGTTTCACTGAC
GTAGCTGCGTTCGAGCCAACAGTGGAGCTTTCTGTCTTCGATGCCCTAGG
GATCCGACTATTCCATGGGTGGGTGGTAGGGGAAGAGGACGAGGACGAGG
AAGGGAGGGAGGGAGGGGTCTTGGCGCAGGTGGTGGGGAACATGACTTAC
AACCAGGTCATGGAGAAGTTGGTGGCAATGAAGGAGGGAGGGAGGGAGAG
AAGGAGGCAGAAGGGCGAGATGGATCGGGGTGAGGGCAAAAGGGCATCAA
GTCAGAAACTACCTTCCCTCCGCTCCTCCTCCTCCATCTCCTCCTCCTCC
TCCAGTTCCTCCTCCTCCTTCTCCTCCAGCACCTCATTCTCCCTCCCTGT
ATCCTCTGGGGCCACTGAATCTCTCTCCCTCCTCGAGGACTTCCTCCTTC
GCACCCCCGGGCAGCTCACCCTCCGGGGACTCTCCCTCCTCCACTCTACC
GTCAGAGAAAACGAGCTCTGCGGCCTCTTTCATCACAACCACTTCTCGGT
CCTGTTGAAGAAAGGGGGTAGGTTGTACTTATTGGTCACAGATGAAGGGT
ACAAAGAGGAGGCTCATGTGGTGTGGGCGAGGTTGGACGGCGTCTCTGGC
GCCGGAGAGCTCGTAGACGGTTTGTTCAGACCGGCGGTTGAAGGGGGAGG
GGCAGGAGGAGGAGGAGGAGGGGGTGTAGAAGGTAGGCTTGGTGGTTGTG
ATCATGGCCATGCTGCCGTTGGGACGGCGATGGCCAGATCTCTGAGGGAG
CAGGAGGAGGCAGAGGCGCGGTTGATAGAACGAGTCATGGCGGCCTCCTT
GCGCGATGTCAGTGGACAAGGCAGGGAAGTAGACGAAACAGGGGGGATAA
GAGAGGAGTTTAAGGAGGAAATGAGGAGGAACGACGAGGAATTTTGCCTT
GACCGGGTGTATTCGGAAGCGGAGCTGGCGGAGATGCGAGAGCTTGAAAG
AGATTTTCAATATGCCAGGCTTCAGGAAAAAGAAAGTAGGCACGGGCCGA
GAGGAAGGACAGAAGGAAGTCAGCAACTAGTTGGAAGACGGGTGGCGAGT
CGGGGCAGGGGGATGGGGGAGAGGGGTGGGAAAAAGGGAAAAAAAGACAC
TTGTACACTGCAATAACATTCAAAAGTCCACACCACGATTAACAATGAAG
TGAATAAAAAGTATCAAAGTTCTTTTGGG

protein sequence of NO24G01880.1

>NO24G01880.1-protein ID=NO24G01880.1-protein|Name=NO24G01880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=518bp
MLLTPRSAASASASPLVFPTKRIPFGPHGRLVPILLQNEAGPCPLLAVAN
ILLLQRQLDVDPEYTKVSLIDILTGIANRVLEATSTAAKAASTADAVAFE
APGGGDEIAKAVGGHADKHVAYQVDEVIHLLPRLRHGMDVNVRFTDVAAF
EPTVELSVFDALGIRLFHGWVVGEEDEDEEGREGGVLAQVVGNMTYNQVM
EKLVAMKEGGRERRRQKGEMDRGEGKRASSQKLPSLRSSSSISSSSSSSS
SSFSSSTSFSLPVSSGATESLSLLEDFLLRTPGQLTLRGLSLLHSTVREN
ELCGLFHHNHFSVLLKKGGRLYLLVTDEGYKEEAHVVWARLDGVSGAGEL
VDGLFRPAVEGGGAGGGGGGGVEGRLGGCDHGHAAVGTAMARSLREQEEA
EARLIERVMAASLRDVSGQGREVDETGGIREEFKEEMRRNDEEFCLDRVY
SEAELAEMRELERDFQYARLQEKESRHGPRGRTEGSQQLVGRRVASRGRG
MGERGGKKGKKDTCTLQ*

Synonyms

Publications