NO24G01860, NO24G01860 (gene) Nannochloropsis oceanica

Overview
NameNO24G01860
Unique NameNO24G01860
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2384
Alignment locationchr24:492544..494927 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:492544..494927 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO24G01860 vs. NCBI_GenBank
Match: EWM24395.1 (hypothetical protein Naga_100283g7 [Nannochloropsis gaditana])

HSP 1 Score: 68.2 bits (165), Expect = 9.300e-8
Identity = 53/142 (37.32%), Postives = 70/142 (49.30%), Query Frame = 0 
Query:  379 TQILSASPLRHVDVIPDSQHPHRLKISSWMPPLSPSLPPSLPHPGL-----------LWRERHFAPLSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWLVMLEFETPADCQRAKQRLERARLRSRRDCRERLQVFLE 510
            T+ LSA PL+HVDV   SQ P  L + +W   + P+LPP LP               LWR R   P S+XXX                               ++ LEFE  +DCQRAK R+E ARL+SRR+ RE+++V+LE
Sbjct:  130 TRYLSALPLQHVDVALVSQQPRHLTVVTW---IDPALPPFLPXXXXXXXXXXXXTIPLWRLRRLLPPSTXXXTGSSSTYLACPSPRRMSRGMDEEGGEVVQR-VLDLEFENMSDCQRAKHRVESARLQSRRETREKVRVWLE 267
The following BLAST results are available for this feature:
BLAST of NO24G01860 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24395.19.300e-837.32hypothetical protein Naga_100283g7 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL040nonsL040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G01860.1NO24G01860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|652336gene_7412Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100283g7gene6084Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G01860.1NO24G01860.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G01860 ID=NO24G01860|Name=NO24G01860|organism=Nannochloropsis oceanica|type=gene|length=2384bp
GGGGGTGGATGGGGGAGAAAGGGAAGGAGGAAGGGGAGGGAGAGGAGGAG
GCTGGTCACACTGAGGATGGCCTTGCTGTTGTTGTGCGAGCTGCTGCCGC
AGGAGGAGGAGAAAGAGGAGGGGAAGGAGGGAGGAGGGACGGAGGGAGAA
AGGGAAGAAGGGAAGGAGATGCGTGAGATTTTGGAGGAGCACATGCGGGA
GGTGATGAGGGCCTGCCTGGAGGCACTGAAGGGGGAGCAGgtcaggggga
gggagggcgggagggagggagggcgggagggagggtggataggaggaaat
gaggtgtgggttttcgctttcagtcttctttgtgtcccgacttcccctct
aactcctccctccctccctccctccttccctcttcagGGCGATAACCTAC
TCTCTTCTTTGGAGGCCCTTCTGTGTCAAGCCCAAGCAGCTGAAAAGAAG
GAGGGAGGGAAGGAGGGAGGGAAGGAGGGAGGAAGGACGAGGAGGAAGGG
CAGGAGGGTGGGTATCACGGAAGCCATTGCTTTTCTCAAGGCCCCGCGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAC
TTCCTCCTCCCCAACCTCCTTCGGCCTCTCGCCCTCCCCGTGCCCGTCAA
TGTCCAGGGATTGGTCAATAACGCTCATGTCCTCCTCTCCTCCTCCTCCT
ACTCCTCCTCCTCCACCACCACCACCACCACCAGCAACAGCCTTGCGACA
AACACCATCCACCCTCCCTCCCTCCCTCCTTCCCTCCTTCCTATGGAATT
TCGTATTCCTGTCACTGAAGAAGAAGAGCTTCCTCGTTTGTGGTATTCGT
TCTTCGCTCTTCGGTATTTACTAGGGCGTCTCCTCCCTCCCCGCCCTCCC
TCCCTCCATCCATCCACCTCTGAGGGGGCGGAGGAGGAGAAGGTGGAGAA
GGAGGAAGGGGAGGAGGAAGGAGAAAGAGGAGAAAAAGAAGGAAATAGGG
TGGAGGAGGAGGAGGAGGAGGAGGAGGACGACGACGACGACGACAATATC
CTTCTTTCTGTGATGGGTTTGACCCTCTCCCAATCACTGGAAACAATTCT
GACATCCAAGCAGCAGGGAGGGGGGGAGGAAGGGGGAGAGGGAGGAGCGT
CATCCCCCTGTCGGCCCTTGACTATATTTCGTgtcagtcgccttgtgata
gggccacacaatcctcctcctccttctcctcctcctcgcctgctcgatcc
atgtcaatgcgacgaagcagctctcctctccctccctccctccctccctc
cccctcttcctcctcctcctttttcctcctcccctctttcttcccttcac
cactggaagagaatgctactctcctccacctcctacgacagCAAAAGAAA
GAGCAGCGTCAGCAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACATCAACAACAACAGCAGCAGCATG
GCCCTCTTGCCTTCCTCCTCCACGATGGGCTTCTCTTGCTGGCCACTCCC
GACCGgtacgcccctcccttcctccctccttccttcttttcatcccttcc
ttcttccctcgcttcttctttacgtataaactttccttctccactccaac
ctctatctccctccctccctccctccctccctctctctcagCACCCAGAT
TCTCTCCGCCTCGCCTCTCCGACACGTGGACGTAATTCCAGACAGTCAGC
ACCCTCACCGGTTGAAGATTTCTTCCTGGATGCCCCCCCTCTCTCCCTCC
CTCCCTCCCTCCCTCCCTCATCCGGGGCTTTTGTGGAGGGAACGACATTT
TGCTCCGCTATCGTCATCTTTGTCGTCGTCTCCATCTTTTTCCCCAGTAG
TGGGACGGGGAGGAGGAGGAGAAGGGAGAGAGAGCGGGAGGGAGGGAAGG
AGGGAGCTGGTGCAGTGGCTCGTAATGCTGGAGTTCGAGACGCCAGCTGA
TTGCCAGgtgaggaggggggggagggagggaggagggagggaagccatgg
ccgatcgtgtctatccatgttgtcttaatgttctgtcgttgacgtatctc
tgactgacttctccacatctcctctccccctccttccccctctccccctt
cctcctctcttctgggtgcagCGGGCCAAGCAAAGGCTAGAACGTGCCCG
CCTTCGTTCTCGACGGGACTGCCGAGAGAGGCTGCAGGTGTTTCTCGAGC
GACAGGTGGAGAAGACGATGGCTGGGAAGGGACGAAGAGTCGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGTGGAGGAGGAGGAGGTCAG
GAGGGGCAATGAATTAGGTGGAGATCCGAGCTAG
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protein sequence of NO24G01860.1

>NO24G01860.1-protein ID=NO24G01860.1-protein|Name=NO24G01860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=554bp
MALLLLCELLPQEEEKEEGKEGGGTEGEREEGKEMREILEEHMREVMRAC
LEALKGEQGDNLLSSLEALLCQAQAAEKKEGGKEGGKEGGRTRRKGRRVG
ITEAIAFLKAPRGREGGREGGREGGREGDFLLPNLLRPLALPVPVNVQGL
VNNAHVLLSSSSYSSSSTTTTTTSNSLATNTIHPPSLPPSLLPMEFRIPV
TEEEELPRLWYSFFALRYLLGRLLPPRPPSLHPSTSEGAEEEKVEKEEGE
EEGERGEKEGNRVEEEEEEEEDDDDDDNILLSVMGLTLSQSLETILTSKQ
QGGGEEGGEGGASSPCRPLTIFRQKKEQRQQQQQQQQQQQQQQQQQQQQQ
QHQQQQQQHGPLAFLLHDGLLLLATPDRTQILSASPLRHVDVIPDSQHPH
RLKISSWMPPLSPSLPPSLPHPGLLWRERHFAPLSSSLSSSPSFSPVVGR
GGGGEGRESGREGRRELVQWLVMLEFETPADCQRAKQRLERARLRSRRDC
RERLQVFLERQVEKTMAGKGRRVEEEEEEEEEEEEEVEEEEVRRGNELGG
DPS*
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Synonyms
Publications