NO24G01820, NO24G01820 (gene) Nannochloropsis oceanica

Overview
NameNO24G01820
Unique NameNO24G01820
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2497
Alignment locationchr24:479875..482371 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:479875..482371 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO24G01820 vs. NCBI_GenBank
Match: EWM24394.1 (hypothetical protein Naga_100283g4 [Nannochloropsis gaditana])

HSP 1 Score: 137.1 bits (344), Expect = 1.600e-28
Identity = 172/571 (30.12%), Postives = 254/571 (44.48%), Query Frame = 0 
Query:    1 MGGTNASSNNPFRAEQTAQMGEEDNVSSTAASATHPHARLCEPPEASLCQALADKEAALTRLQDHEILVKELVQTMDNIIKEKETLQTELDAARRQTQAQGNGTDASTLAQAMVATNATEVHIT------SLEAQLQNLTAEGH--TARXXXXXXXXXXXXXXXXXXXXXRWNRQEMRDRREAEQESETLRERVAQMSRRLRRVAERAREDTLDQHTETSGNVVRTHTSNTTTTTAIDLGQRGRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKVTDLENELQYACCLRESLETAVVDAQEKLDQCQAELRTALDRLT-GLEALVETHEAGKNLVDEAQGEIERLELANHDLQREIMGLEALLEEARQITEVEKRQVTIMEVGLEEATAKAQASVDKIIQLKMTKADLIERVSHLEVERAQDQARISLMQEERDDWRKRAEDEVYEWVGISGEPDAYPEDKPKEVTAMAEV-TEAIVDARDYSEVETAXXXXXXXXXXXXXXXXXXXXXXXXXXL----------GGLDPVEALMKENLALRAQIEGLRRREAEVQ 552
            MGG   +  NPFR E   Q   ++ V+S  A+ T      CE  EA L QALADK+A L RL ++EI+VKEL + +D I +EKE +Q +L A   Q +    G +   L  AM+    +  H +      + E ++   ++ G   TAR                      W R E ++ +E E+E   LR R+A++ RR+R     +    L +   +  N  +   ++ +  T+ D    G +                                           ++ DL++ LQ A     SLE+AV     +L++ + +LR A++R+T                                 L RE+M LEA LEEA+Q  E  + ++  ++VG EEA  + +A  +K+ +L + K  L  +V  LE E+ Q  AR+SLM+EE   WR+RAED V EWVG+        E   +EV     +  E  V   +Y   E        XXXXXXXXXXXXXXX     L           G + VEAL++ENLALR  IEGLR  + + +
Sbjct:    1 MGGEKLNHTNPFRVEPLPQESADEGVASIIATTTRKCPSRCEKREAFLRQALADKQATLVRLHEYEIVVKELAEAIDKITEEKEEIQDKLHAVHHQNR---QGNELHLLLDAMMTLGTSRRHSSFGSFSDAPEGRVDATSSRGEAMTARDDLMGI----------------WARGETKEHQEVERELNVLRRRMAKLCRRIRTRQVESERGALHRVHGSDNNESQGAATSASKGTSQDGEHVGMRHEERREEVWHPRSQLPGQEQDQRHHEKPHVLQN----------EIRDLKDNLQVAQARCASLESAVFAEHGQLEESRGDLREAMERVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSREVMTLEASLEEAQQAAESARSELFQLQVGREEAELRTEAEKEKVEELSVIKLALAGQVRRLEEEQRQCTARLSLMEEEVQVWRQRAED-VSEWVGVMCNETEKKEAGTEEVPIPGILAAEGRVQTEEYQTAENVLNVTRAXXXXXXXXXXXXXXXPQADSLPLPSIKKTGNAGSNRVEALLQENLALRKTIEGLRGEDTKAK 541
[Close]
BLAST of NO24G01820 vs. NCBI_GenBank
Match: XP_005855546.1 (hypothetical protein NGA_0641200 [Nannochloropsis gaditana CCMP526] >EKU20812.1 hypothetical protein NGA_0641200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 85.5 bits (210), Expect = 5.700e-13
Identity = 118/400 (29.50%), Postives = 179/400 (44.75%), Query Frame = 0 
Query:  164 WNRQEMRDRREAEQESETLRERVAQMSRRLRRVAERAREDTLDQHTETSGNVVRTHTSNTTTTTAIDLGQRGRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKVTDLENELQYACCLRESLETAVVDAQEKLDQCQAELRTALDRLT-GLEALVETHEAGKNLVDEAQGEIERLELANHDLQREIMGLEALLEEARQITEVEKRQVTIMEVGLEEATAKAQASVDKIIQLKMTKADLIERVSHLEVERAQDQARISLMQEERDDWRKRAEDEVYEWVGISGEPDAYPEDKPKEVTAMAEV-TEAIVDARDYSEVETAXXXXXXXXXXXXXXXXXXXXXXXXXXL----------GGLDPVEALMKENLALRAQIEGLRRREAEVQ 552
            W R E ++ +E E+E   LR R+A++ RR+R     +    L +   +  N  +   ++ +  T+ D    G +                                           ++ DL++ LQ A     SLE+AV   + +L++ + ++R A++R+T                                DL RE+M LEA LEEA+Q  E  + ++  ++VG EEA  + +A  +K+ +L + K  L  +V  LE E+ Q  AR+SLM+EE   WR+RAED V EWVG+        E   +EV     +  E  V   +Y   E        XXXXXXXXXXXXXXX     L           G + VEAL++E+LALR  IEGLR  + + +
Sbjct:   11 WARGETKEHQEVERELNVLRRRMAKLCRRIRTRQVESERGALHRVHGSDNNESQGAATSASEGTSQDGEHVGMRHEERREEVWHPRSQLPGQEQDQRHHEKPHVLQN----------EIRDLKDNLQVAQARCASLESAVFAERGQLEESRGDVREAMERVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLSREVMTLEASLEEAQQAAESARSELFQLQVGREEAELRTEAEKEKVEELSVIKLALAGQVRRLEEEQRQCTARLSLMEEEVQVWRQRAED-VSEWVGVMCNETEKKEAGTEEVPIPGILAAEGRVQTEEYQTAENVLNVTRAXXXXXXXXXXXXXXXPQADSLPLPSIKKTGNAGSNRVEALLQEDLALRKTIEGLRGEDTKAK 399
The following BLAST results are available for this feature:
BLAST of NO24G01820 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM24394.11.600e-2830.12hypothetical protein Naga_100283g4 [Nannochloropsi... [more]
XP_005855546.15.700e-1329.50hypothetical protein NGA_0641200 [Nannochloropsis ... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL040nonsL040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002806NSK002806Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G01820.1NO24G01820.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598644gene_7407Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100283g4gene6087Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G01820.1NO24G01820.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G01820 ID=NO24G01820|Name=NO24G01820|organism=Nannochloropsis oceanica|type=gene|length=2497bp
CACACAGCAATGGGAGGCACCAACGCCAGCAGCAATAATCCCTTTCGGGC
CGAGCAAACGGCGCAGATGGGGGAGGAAGACAATGTCAGTTCGACGGCTG
CTTCAGCCACGCATCCGCACGCCCGCCTATGTGAACCCCCAGAGGCCTCG
CTCTGTCAAGCGCTGGCCGATAAGGAGGCTGCTTTGACACGACTTCAAGA
CCACGAGATCTTGGTCAAGGAGTTGGTGCAGACTATGGACAACATTATCA
AAGAGAAAGgtgggtggcgcatgctatttgttttctcttccagtatgtac
cgcgagagtgtgtctgtgtgtcgttgaagatgacagccgttattatcgaa
tgaggaagttgcagcctgctggtgaaaggcgtagaaggagacacgatagg
cggccccagcaatccattaaggcctgtatttccgcccccaccccatccac
ctctgtaaattctgcgcatggatcataaaagtcccataactttatgagcc
ctactcacatactgtccttcaagcttacaatccttgttatctcacgtcag
atggattcttccgcgaattcgtctctctctgtgagagatatggcttatgt
attgccttgttccaccggtctcataaacaacagAGACCCTTCAAACCGAG
CTTGACGCCGCTCGTCGCCAAACGCAAGCCCAGGGCAACGGCACTGACGC
GTCCACCCTCGCCCAAGCTATGGTCGCGACTAATGCAACAGAGGTGCACA
TCACTTCGCTCGAGGCACAGCTTCAGAACTTGACTGCAGAAGGGCACACC
GCGCGGGCAGAGATACTAAGACTGACGCAAGAGCTGGCGACGGCCAAGGA
TGACGTACTTGGGCTCACGCGCTGGAATCGGCAGGAGATGAGGGACCGTC
GAGAAGCGGAGCAGGAATCCGAGACCTTGCGGGAGAGGGTGGCCCAGATG
TCACGTCGCCTGCGTCGCGTGGCGGAACGAGCGCGGGAGGACACTCTAGA
CCAGCACACCGAGACGAGTGGCAATGTAGTCCGCACTCACACAAGCAACA
CTACCACCACCACTGCCATCGACCTAGGACAGCGGGGGCGAAAAGAAGAG
CGACAGCAGGATCGGAAACAAGAGCGAAAGCAGGGCCGAAAGCAGGAGCG
ACAGCAGGAGCGACAGCAGCAGCGTCAAGAGGAGCGGCAGCAGCAGCAGC
AGCAGCAGCCCTTGCTGCAGGCCAAGGTGACGGACCTGGAGAACGAGCTA
CAGTATGCTTGCTGTCTCCGCGAGAGCCTGGAGACTGCCGTCGTGGATGC
ACAGGAAAAACTGGATCAGTGTCAGGCAGAACTCCGCACAGCGCTGGACC
GTCTGACAGGTCTTGAGGCTTTGGTCGAAACGCACGAGGCGGGTAAGAAT
CTGGTGGACGAGGCGCAAGGGGAGATTGAGCGGTTGGAGCTTGCAAACCA
CGATCTGCAGCGGGAGATAATGGGGTTGGAGGCCTTGCTTGAAGAAGCCC
GCCAGATTACCGAGGTGGAGAAGCGTCAAGTGACAATAATGGAGGTTGGG
CTTGAGGAGGCCACGGCCAAGGCTCAGGCGTCGGTGGACAAGATCATCCA
GCTCAAGATGACGAAGGCTGATTTGATAGAACGGGTTTCGCACTTGGAAG
TCGAACGTGCGCAAGATCAAGCTCGAATATCTCTCATGCAAGAGGAGCGG
GATGACTGGCGAAAGCGCGCGGAAGACGAGGTGTACGAGTGGGTGGGGAT
CTCGGGCGAACCAGATGCTTATCCCGAAGACAAACCGAAGGAGGTCACAG
CGATGGCTGAGGTCACTGAGGCCATCGTGGACGCACGTGATTACTCCGAG
GTGGAAACCGCCGTCACGACGACAACGACGACGGGGGCCGCGGCTGCTGC
GACTACGAGCACGCATCTGACTCCCCCTAAGCGAGAGGAACTGGGAGGGC
TTGACCCAGTGGAGGCGCTGATGAAGGAAAATTTAGCCTTGCGCGCTCAG
ATTGAAGGACTGCGTCGGCGCGAAGCGGAGGTGCAGTCATGGTCGGTGTG
AGGAAAAGGTTATATTTATGTTTCCCAAAGAAAAAAGTTATCCTGAAAGG
CAGGGGAAAAGAGAGAGAAAGCAGGAGAAAGAGAATCTCTGAGAGAAGGA
GAGTTGAGAACATACAAGTGCACGGACCCGGAAATAAAGGAAAGTAGGGA
GCGACGCTAGACAGCAGAGAAACTTGGACAGCAATTGCGGTGAATTCAGT
GCAGGCGTATTTATTTGAGATGAAGAGATAAGTGGGTGGGAGTTTGTATC
CCAGAACAGTCAGGGAGACTTATAGAGAAGGTTGAGAAACTATAACTTTA
CGTAGAGTCAGACCAACAGGCGAAAAGCGAAGTGACAAGGAAAGGAGTAT
TACAAAAAAACAGGGGATTACAAAAAGAGGGGAAACAATAAGACATGTAG
GGAAAGAAGAGTGCGTTTGAATACAACTTAATGAATTTGAAAAAACT
back to top

protein sequence of NO24G01820.1

>NO24G01820.1-protein ID=NO24G01820.1-protein|Name=NO24G01820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=556bp
MGGTNASSNNPFRAEQTAQMGEEDNVSSTAASATHPHARLCEPPEASLCQ
ALADKEAALTRLQDHEILVKELVQTMDNIIKEKETLQTELDAARRQTQAQ
GNGTDASTLAQAMVATNATEVHITSLEAQLQNLTAEGHTARAEILRLTQE
LATAKDDVLGLTRWNRQEMRDRREAEQESETLRERVAQMSRRLRRVAERA
REDTLDQHTETSGNVVRTHTSNTTTTTAIDLGQRGRKEERQQDRKQERKQ
GRKQERQQERQQQRQEERQQQQQQQPLLQAKVTDLENELQYACCLRESLE
TAVVDAQEKLDQCQAELRTALDRLTGLEALVETHEAGKNLVDEAQGEIER
LELANHDLQREIMGLEALLEEARQITEVEKRQVTIMEVGLEEATAKAQAS
VDKIIQLKMTKADLIERVSHLEVERAQDQARISLMQEERDDWRKRAEDEV
YEWVGISGEPDAYPEDKPKEVTAMAEVTEAIVDARDYSEVETAVTTTTTT
GAAAAATTSTHLTPPKREELGGLDPVEALMKENLALRAQIEGLRRREAEV
QSWSV*
back to top
Synonyms
Publications