NO24G01810, NO24G01810 (gene) Nannochloropsis oceanica

Overview
NameNO24G01810
Unique NameNO24G01810
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1398
Alignment locationchr24:478380..479777 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:478380..479777 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO24G01810 vs. NCBI_GenBank
Match: EWM24396.1 (hypothetical protein Naga_100283g3 [Nannochloropsis gaditana])

HSP 1 Score: 196.4 bits (498), Expect = 1.100e-46
Identity = 104/156 (66.67%), Postives = 125/156 (80.13%), Query Frame = 0 
Query:   32 WFDSLGVDIGKALETAREQVVKAAEDATPAWSSAMDAVKQHAARFKEEAVHAAQSLQQVAVNATQDIEAEQARVKASSVTDLPPSSLVTLLPWETADESQSILSQVLLDQILALSHDDRTFDPLHDEEKRQFPNFKLENYVEVITRLLALDPALAK 188
            WF S   DIG+A ETAR+QVVKAA++A+PA++SAMDAVK  A + KEEAV AAQ+L QVA  A Q+I AE+AR+KASS   +PPSSLV+LLPWE  DESQ IL+Q L++QILA+SHD+ TF PLH EE+ QF  F LENYV VITRLL+LDPAL K
Sbjct:   20 WFGSFSADIGRAFETARDQVVKAADEASPAFTSAMDAVKLRAVKLKEEAVQAAQALHQVAEKAAQEISAEEARIKASSSAAVPPSSLVSLLPWEANDESQEILTQPLMEQILAISHDEATFAPLHAEEEEQFGPFDLENYVTVITRLLSLDPALEK 175
The following BLAST results are available for this feature:
BLAST of NO24G01810 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24396.11.100e-4666.67hypothetical protein Naga_100283g3 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL040nonsL040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002807NSK002807Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G01810.1NO24G01810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632241gene_7406Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100283g3gene6088Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G01810.1NO24G01810.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G01810 ID=NO24G01810|Name=NO24G01810|organism=Nannochloropsis oceanica|type=gene|length=1398bp
ATGGCCGACGATGAGACCACCGCAAACACTTCCCCTCCCCCGGCAGTTGA
CGCCACCACCGCCGCCACCACCGCCGCCGCAGCCGCGACTAGCTGGTTCG
ATAGCTTGGGTGTGGACATTGGCAAGGCCCTGGAGACTGCCCGGGAACAA
GTGGTCAAGGCTGCTGAGgtacgtaattgacgggagaggcaagcagcatt
atccgcccaaagcgcctggcccttaactcttaaatcgcacacccacagGA
TGCCACGCCTGCCTGGTCTTCAGCCATGGATGCAGTGAAGCAACATGCCG
CCAGATTTAAAGAGgtaaggtattatagctttcttccttgctttccggat
cccctctagttctcacttaccctcatctctcggcagcacagccgtcaaaa
agtgccttacttccgcaacgtatcgcacttatccatccgcaccgcctttg
ttttctatcatctcgcttatgcacaagggtgttcaaccctctatccctcg
ttcttttcatccctcacttcctcccgcaacagGAAGCAGTGCACGCGGCC
CAATCCTTGCAGCAAGTCGCGGTGAATGCGACCCAAGATATTGAAGCCGA
ACAAGCGCGCGTCAAAGCGTCTTCTGTCACTGATCTCCCGCCTTCCTCTC
TAGTGACTTTGCTCCCCTGGGAGACAGCCGATGAGAGTCAGTCGATTCTA
TCGCAGGTCTTGCTGGATCAGATCCTGGCATTGTCTCACGATGACCGAAC
TTTCGACCCCTTACATGACGAAGAGAAGAGACAATTTCCAAATTTCAAAT
TGGAGAATTACGTTGAAGTGATCACGAGACTGCTGGCCTTAGACCCAGCC
TTAGgtaagatgcatgcgaaatatggcgggaaggggaaggaggaaggggc
tttttggcagtcgtatttttacaggtgtgcgtgtttgagggtagggtgcg
ggatggggggagggagggaggcaagagggggaggagtggggtatgagatc
attggtgaccctgtcgtgatgcctgtggtggagggaaatgagaacggggg
atgtagagagaaagtgaaggaggggaaggggggagaaaagagtcggcagc
tcggttgtcgtcgtcgggaggagtgaaggagtccaaggaatcgacttcct
cgccagCGAAGTCGCCATCAGGATCAGTAGCTACAAAAGAAAGAGAAGCA
GCCGTAGCAGTAGCTGCAGAGGAAAAGGGGAAGGAGGAAGTGGGGGTAGA
AGGAGAAGGAGGAGGGGATGGAGATAGCATGAATTTGGATGGACTAAACT
TGAGTGATGATGAGGAGGGAGGGGACGCGTTGGAAGGCGATGCGCTATTG
GAGCTTGAGGCTCAGATTGCGGCGGAGCTAGGGGAGGATGAAGAATGA
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protein sequence of NO24G01810.1

>NO24G01810.1-protein ID=NO24G01810.1-protein|Name=NO24G01810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MADDETTANTSPPPAVDATTAATTAAAAATSWFDSLGVDIGKALETAREQ
VVKAAEDATPAWSSAMDAVKQHAARFKEEAVHAAQSLQQVAVNATQDIEA
EQARVKASSVTDLPPSSLVTLLPWETADESQSILSQVLLDQILALSHDDR
TFDPLHDEEKRQFPNFKLENYVEVITRLLALDPALAKSPSGSVATKEREA
AVAVAAEEKGKEEVGVEGEGGGDGDSMNLDGLNLSDDEEGGDALEGDALL
ELEAQIAAELGEDEE*
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Synonyms
Publications