NO24G01780, NO24G01780 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO24G01780 vs. NCBI_GenBank
Match: EWM24397.1 (hypothetical protein Naga_100283g1 [Nannochloropsis gaditana]) HSP 1 Score: 259.2 bits (661), Expect = 2.600e-65 Identity = 121/155 (78.06%), Postives = 140/155 (90.32%), Query Frame = 0 Query: 23 RASGLKRRAFKRTSQASQDCLKLLRFVFPVLVAPLCLCSFVYTCLYAYIYAREGSYGAQDWQKCLTVPNIGNLHRDNNRFCTSASNFAGQAYLSVLVAVGGLRMGLKDNDLLWFSWFTCMVGVVGITIFRESYPYFLDPHFMSTTLLTLSKYIHP 178 R+ LKRR +RTS+ASQ+ LKLLR +FP+LVAPLC+ SF++TCLYA+IYAREGSYG +DW KCLTVPNIGNLH DNNRFCTSASNFAGQAYLS+LVA GGL++GL+DND L FS FTC+VG++GITI+RESYPYFLDPHFMSTTL TLSKYIHP Sbjct: 18 RSPELKRRLHRRTSKASQESLKLLRIIFPLLVAPLCITSFIFTCLYAHIYAREGSYGPEDWPKCLTVPNIGNLHLDNNRFCTSASNFAGQAYLSLLVAAGGLQLGLRDNDYLLFSSFTCIVGLLGITIYRESYPYFLDPHFMSTTLFTLSKYIHP 172
BLAST of NO24G01780 vs. NCBI_GenBank
Match: EWM26071.1 (hypothetical protein Naga_100278g4 [Nannochloropsis gaditana]) HSP 1 Score: 163.3 bits (412), Expect = 1.900e-36 Identity = 129/429 (30.07%), Postives = 200/429 (46.62%), Query Frame = 0 Query: 30 RAFKRTSQASQDCLKLLRFVFPVLVAPLCLCSFVYTCLYAYIYAREGSYGAQDWQKCLTVPN-----IGNLHRDNNRFCTSASNFAGQAYLSVLVAVGGLRMGLKDNDLLWFSWFTCMVGVVGITIFRESYPYFLDPHFMSTTLLTLSKYIHPGMYDNLAASTHLPAELKDKIPSSEVCKTAYQVNLAFLSIQ--YGVLSLSILLSI-LCLYALLSRPRRGGARVRMRGRE-GLVFFGVTAFAGMVTMLISKEKVAELAIQVAAEDAHDTSFPFLDNNLDLVSLTTLLAIGTSFYAVCKPSLLSLSICTAISAFNAMRSVPGMLGTIAAYSGIYYPSLDEGPDGNHAVLTETHYVLWN---RAQCSQYVQVTNPGAFSVDPNADENSSNMCYYFVSSITGQIVTWVSILSLAVTAFWVMKHNPNIDKDR 447 R +R Q L LR +F V+ PL + + + C+YA+I+A + SY DWQ+CL PN +G D + +A+++AG+ ++ ++V +G+KD D+L +S F ++ ++GI ++RE+ P P +S TLLTL KYI P MY AA+ PA C AY +N FL Q VL SI L I C A +R ++ G GL+ V AF G VT +KE VA+L + V E ++ F F LD+VSLT ++ +G CK L + IS + + S P +L TI AY+ + YP N + +W+ C YV F P E MC+ S+ GQ++ + + + + +++ N ++ R Sbjct: 49 RLARRYFQIQDRSLTALRILF-VVGIPLTIINISFACVYAWIFANQYSYTKDDWQRCLVYPNQAVDPLGGSTADKTNYLMAAASYAGRVFVFIIVVFKMAYVGVKDTDILPYSLFANVMAILGIIVYREAEPIQPQPQQLSATLLTLVKYIQPNMYSFPAAAKWAPAS----------CSLAYALNKWFLIFQILVVVLMCSIFLVISTCAVANYRIGKRWRFQLEANGYPLGLL---VIAFVGYVTCFYAKETVAQLTLDVLNESKLNSIFAFSKGELDIVSLTMMMTLGAIGVGTCKGDLEKFKLGAFISYIHVVLSYPSVLATIHAYNSVTYPY-------NKDKSLAQAFSIWSLDPAYGCPAYV-TAKSAIFERFPKEAETLCRMCHL---SLIGQLIQFGAQHLVVIACLYILYANRDLPAQR 452
BLAST of NO24G01780 vs. NCBI_GenBank
Match: EWM26072.1 (hypothetical protein Naga_100278g4 [Nannochloropsis gaditana]) HSP 1 Score: 159.5 bits (402), Expect = 2.800e-35 Identity = 114/336 (33.93%), Postives = 169/336 (50.30%), Query Frame = 0 Query: 30 RAFKRTSQASQDCLKLLRFVFPVLVAPLCLCSFVYTCLYAYIYAREGSYGAQDWQKCLTVPN-----IGNLHRDNNRFCTSASNFAGQAYLSVLVAVGGLRMGLKDNDLLWFSWFTCMVGVVGITIFRESYPYFLDPHFMSTTLLTLSKYIHPGMYDNLAASTHLPAELKDKIPSSEVCKTAYQVNLAFLSIQ--YGVLSLSILLSI-LCLYALLSRPRRGGARVRMRGRE-GLVFFGVTAFAGMVTMLISKEKVAELAIQVAAEDAHDTSFPFLDNNLDLVSLTTLLAIGTSFYAVCKPSLLSLSICTAISAFNAMRSVPGMLGTIAAYSGIYYP 357 R +R Q L LR +F V+ PL + + + C+YA+I+A + SY DWQ+CL PN +G D + +A+++AG+ ++ ++V +G+KD D+L +S F ++ ++GI ++RE+ P P +S TLLTL KYI P MY AA+ PA C AY +N FL Q VL SI L I C A +R ++ G GL+ V AF G VT +KE VA+L + V E ++ F F LD+VSLT ++ +G CK L + IS + + S P +L TI AY+ + YP Sbjct: 49 RLARRYFQIQDRSLTALRILF-VVGIPLTIINISFACVYAWIFANQYSYTKDDWQRCLVYPNQAVDPLGGSTADKTNYLMAAASYAGRVFVFIIVVFKMAYVGVKDTDILPYSLFANVMAILGIIVYREAEPIQPQPQQLSATLLTLVKYIQPNMYSFPAAAKWAPAS----------CSLAYALNKWFLIFQILVVVLMCSIFLVISTCAVANYRIGKRWRFQLEANGYPLGLL---VIAFVGYVTCFYAKETVAQLTLDVLNESKLNSIFAFSKGELDIVSLTMMMTLGAIGVGTCKGDLEKFKLGAFISYIHVVLSYPSVLATIHAYNSVTYP 370
BLAST of NO24G01780 vs. NCBI_GenBank
Match: EWM26963.1 (hypothetical protein Naga_101509g1, partial [Nannochloropsis gaditana]) HSP 1 Score: 126.3 bits (316), Expect = 2.600e-25 Identity = 80/244 (32.79%), Postives = 125/244 (51.23%), Query Frame = 0 Query: 52 VLVAPLCLCSFVYTCLYAYIYAREGSYGAQDWQKCLTVPNIGNLH-RDNNRFCTSASNFAGQAYLSVLVAVGGLRMGLKDNDLLWFSWFTCMVGVVGITIFRESYPYFLDPHFMSTTLLTLSKYIHPGMYDNLAASTHLPAELKDKIPSSEVCKTAYQVNLAFLSIQYGVLSLSILLSILCLYALLSRPRRGGARVRMRGREGLVFFGVTAFAGMVTMLISKEKVAELAIQVAAEDAHDTSFPF 295 ++ P + S + +YA+I R+ Y +DWQ+CL PN G D F SA+ FA +A + ++++ G+ GL D+D+L ++ F G++G+T++RES P +P MS TL+TL+K+IHP MY +L A P +C A+ N AFL +QY +L L + L + +Y + P R VR+ G + G + L++KE VA +QV E F F Sbjct: 29 LVAIPTVMASTILATVYAWIQGRQYGYTVEDWQRCLVSPNKGGFGVGDQTLFTGSAATFAMKAVVFLILSFNGVNAGLIDHDMLPYALFVSFSGLLGMTVYRESSPIQPEPRVMSATLVTLTKFIHPRMYADLPA--------YQGQPEPSLCTHAFHFNQAFLVVQYMMLLLGVGLFSIAVYTIAFSP-RDYLDVRLAGTRATLTLVPVIMTGYLLTLLAKEIVAVETMQVLQESQLGYMFMF 263
BLAST of NO24G01780 vs. NCBI_GenBank
Match: XP_005853731.1 (hypothetical protein NGA_0163502 [Nannochloropsis gaditana CCMP526] >XP_005854371.1 hypothetical protein NGA_0163501 [Nannochloropsis gaditana CCMP526] >EKU21986.1 hypothetical protein NGA_0163501 [Nannochloropsis gaditana CCMP526] >EKU22627.1 hypothetical protein NGA_0163502 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 114.0 bits (284), Expect = 1.300e-21 Identity = 69/199 (34.67%), Postives = 105/199 (52.76%), Query Frame = 0 Query: 30 RAFKRTSQASQDCLKLLRFVFPVLVAPLCLCSFVYTCLYAYIYAREGSYGAQDWQKCLTVPN-----IGNLHRDNNRFCTSASNFAGQAYLSVLVAVGGLRMGLKDNDLLWFSWFTCMVGVVGITIFRESYPYFLDPHFMSTTLLTLSKYIHPGMYDNLAASTHLPAELKDKIPSSEVCKTAYQVNLAFLSIQYGVLSL 224 R +R Q L LR +F V+ PL + + + C+YA+I+A + SY DWQ+CL PN +G D + +A+++AG+ ++ ++V +G+KD D+L +S F M+ ++GI ++RE+ P P +S TLLTL KYI P MY AA+ PA C AY +N FL Q V+ L Sbjct: 49 RLARRYFQIQDRSLTALRILF-VVGIPLTIINISFACVYAWIFANQYSYTKDDWQRCLVYPNQAVDPLGGSTADKTNYLMAAASYAGRVFVFIIVVFKMAYVGVKDTDILPYSLFANMMAILGIIVYREAEPIQPQPQQLSATLLTLVKYIQPNMYSFPAAAKWAPAS----------CSLAYALNKWFLIFQILVVVL 236
BLAST of NO24G01780 vs. NCBI_GenBank
Match: EWM21737.1 (hypothetical protein Naga_100270g4 [Nannochloropsis gaditana]) HSP 1 Score: 99.4 bits (246), Expect = 3.400e-17 Identity = 85/313 (27.16%), Postives = 143/313 (45.69%), Query Frame = 0 Query: 42 CLKLLRFVFPVLVAPLCLCSFVYTCLYAYIYAREGSY--GAQDWQKCLTVPNIGNLHRDNNRFCTSASNFAGQAYLSVLVAVGGLRMGLKDNDLLWFSWFTCMVGVVGITIFRESYPYFLDPHFMSTTLLTLSKYIHPGMYDNLAASTHLPAELKDKIPSSEVCKTAYQVNLAFLSIQYGVLSLSILLSILCLYALLSRPR--RGGARVRMRGREGLVFFGVTAFAGMVTMLISKEKVAELAIQVAAEDAHDTSFPFLDNNLDLVSLTTLLAIGTSFYAVCKPSLLSLSICTAISAFNAMRSVPGMLGTIAAY 351 CL LLR +F V V PL + + +Y CLY +I+ +Y WQ+C+ V N N + F SAS F G ++ + + +GL+D DLL +S ++G ++R P ++ TL++L+ ++ PGMY A++ D ++ C+ A +VN++FL+ + + + +L LYA R R + + R L G+ A A + + +KE A + + + H FPF LD V L LL + + Y CK S + + + + S P ++ AY Sbjct: 122 CLGLLRKLFYV-VMPLSIVASIYACLYGWIFVNTPTYLQDPTSWQRCI-VYNTNNANATPQNFAVSASAFGGMMFIFMGLGFKAGYLGLQDMDLLPYSLTVTCYTLLGQLVYRPVNPVVPAITELTPTLISLASFLRPGMY----------ADVPD---AAGACQHARRVNVSFLAFVLVLFAANFCNLLLLLYATYRTRRVPRSSRYLLVWHRPALCLVGL-AIAAYIVTIAAKEDAALKTLFLLDKVGHGYLFPFQRPTLDTVGLFLLLTVASVVYGACKQEPESFKWASFTAYVHVLLSYPILISNFQAY 418 The following BLAST results are available for this feature:
BLAST of NO24G01780 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 6
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO24G01780 ID=NO24G01780|Name=NO24G01780|organism=Nannochloropsis oceanica|type=gene|length=2638bpback to top protein sequence of NO24G01780.1 >NO24G01780.1-protein ID=NO24G01780.1-protein|Name=NO24G01780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=499bpback to top Synonyms
Publications
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