NO24G01780, NO24G01780 (gene) Nannochloropsis oceanica

Overview
NameNO24G01780
Unique NameNO24G01780
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2638
Alignment locationchr24:471448..474085 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:471448..474085 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO24G01780 vs. NCBI_GenBank
Match: EWM24397.1 (hypothetical protein Naga_100283g1 [Nannochloropsis gaditana])

HSP 1 Score: 259.2 bits (661), Expect = 2.600e-65
Identity = 121/155 (78.06%), Postives = 140/155 (90.32%), Query Frame = 0
Query:   23 RASGLKRRAFKRTSQASQDCLKLLRFVFPVLVAPLCLCSFVYTCLYAYIYAREGSYGAQDWQKCLTVPNIGNLHRDNNRFCTSASNFAGQAYLSVLVAVGGLRMGLKDNDLLWFSWFTCMVGVVGITIFRESYPYFLDPHFMSTTLLTLSKYIHP 178
            R+  LKRR  +RTS+ASQ+ LKLLR +FP+LVAPLC+ SF++TCLYA+IYAREGSYG +DW KCLTVPNIGNLH DNNRFCTSASNFAGQAYLS+LVA GGL++GL+DND L FS FTC+VG++GITI+RESYPYFLDPHFMSTTL TLSKYIHP
Sbjct:   18 RSPELKRRLHRRTSKASQESLKLLRIIFPLLVAPLCITSFIFTCLYAHIYAREGSYGPEDWPKCLTVPNIGNLHLDNNRFCTSASNFAGQAYLSLLVAAGGLQLGLRDNDYLLFSSFTCIVGLLGITIYRESYPYFLDPHFMSTTLFTLSKYIHP 172          
BLAST of NO24G01780 vs. NCBI_GenBank
Match: EWM26071.1 (hypothetical protein Naga_100278g4 [Nannochloropsis gaditana])

HSP 1 Score: 163.3 bits (412), Expect = 1.900e-36
Identity = 129/429 (30.07%), Postives = 200/429 (46.62%), Query Frame = 0
Query:   30 RAFKRTSQASQDCLKLLRFVFPVLVAPLCLCSFVYTCLYAYIYAREGSYGAQDWQKCLTVPN-----IGNLHRDNNRFCTSASNFAGQAYLSVLVAVGGLRMGLKDNDLLWFSWFTCMVGVVGITIFRESYPYFLDPHFMSTTLLTLSKYIHPGMYDNLAASTHLPAELKDKIPSSEVCKTAYQVNLAFLSIQ--YGVLSLSILLSI-LCLYALLSRPRRGGARVRMRGRE-GLVFFGVTAFAGMVTMLISKEKVAELAIQVAAEDAHDTSFPFLDNNLDLVSLTTLLAIGTSFYAVCKPSLLSLSICTAISAFNAMRSVPGMLGTIAAYSGIYYPSLDEGPDGNHAVLTETHYVLWN---RAQCSQYVQVTNPGAFSVDPNADENSSNMCYYFVSSITGQIVTWVSILSLAVTAFWVMKHNPNIDKDR 447
            R  +R  Q     L  LR +F V+  PL + +  + C+YA+I+A + SY   DWQ+CL  PN     +G    D   +  +A+++AG+ ++ ++V      +G+KD D+L +S F  ++ ++GI ++RE+ P    P  +S TLLTL KYI P MY   AA+   PA           C  AY +N  FL  Q    VL  SI L I  C  A     +R   ++   G   GL+   V AF G VT   +KE VA+L + V  E   ++ F F    LD+VSLT ++ +G      CK  L    +   IS  + + S P +L TI AY+ + YP        N        + +W+      C  YV       F   P   E    MC+    S+ GQ++ + +   + +   +++  N ++   R
Sbjct:   49 RLARRYFQIQDRSLTALRILF-VVGIPLTIINISFACVYAWIFANQYSYTKDDWQRCLVYPNQAVDPLGGSTADKTNYLMAAASYAGRVFVFIIVVFKMAYVGVKDTDILPYSLFANVMAILGIIVYREAEPIQPQPQQLSATLLTLVKYIQPNMYSFPAAAKWAPAS----------CSLAYALNKWFLIFQILVVVLMCSIFLVISTCAVANYRIGKRWRFQLEANGYPLGLL---VIAFVGYVTCFYAKETVAQLTLDVLNESKLNSIFAFSKGELDIVSLTMMMTLGAIGVGTCKGDLEKFKLGAFISYIHVVLSYPSVLATIHAYNSVTYPY-------NKDKSLAQAFSIWSLDPAYGCPAYV-TAKSAIFERFPKEAETLCRMCHL---SLIGQLIQFGAQHLVVIACLYILYANRDLPAQR 452          
BLAST of NO24G01780 vs. NCBI_GenBank
Match: EWM26072.1 (hypothetical protein Naga_100278g4 [Nannochloropsis gaditana])

HSP 1 Score: 159.5 bits (402), Expect = 2.800e-35
Identity = 114/336 (33.93%), Postives = 169/336 (50.30%), Query Frame = 0
Query:   30 RAFKRTSQASQDCLKLLRFVFPVLVAPLCLCSFVYTCLYAYIYAREGSYGAQDWQKCLTVPN-----IGNLHRDNNRFCTSASNFAGQAYLSVLVAVGGLRMGLKDNDLLWFSWFTCMVGVVGITIFRESYPYFLDPHFMSTTLLTLSKYIHPGMYDNLAASTHLPAELKDKIPSSEVCKTAYQVNLAFLSIQ--YGVLSLSILLSI-LCLYALLSRPRRGGARVRMRGRE-GLVFFGVTAFAGMVTMLISKEKVAELAIQVAAEDAHDTSFPFLDNNLDLVSLTTLLAIGTSFYAVCKPSLLSLSICTAISAFNAMRSVPGMLGTIAAYSGIYYP 357
            R  +R  Q     L  LR +F V+  PL + +  + C+YA+I+A + SY   DWQ+CL  PN     +G    D   +  +A+++AG+ ++ ++V      +G+KD D+L +S F  ++ ++GI ++RE+ P    P  +S TLLTL KYI P MY   AA+   PA           C  AY +N  FL  Q    VL  SI L I  C  A     +R   ++   G   GL+   V AF G VT   +KE VA+L + V  E   ++ F F    LD+VSLT ++ +G      CK  L    +   IS  + + S P +L TI AY+ + YP
Sbjct:   49 RLARRYFQIQDRSLTALRILF-VVGIPLTIINISFACVYAWIFANQYSYTKDDWQRCLVYPNQAVDPLGGSTADKTNYLMAAASYAGRVFVFIIVVFKMAYVGVKDTDILPYSLFANVMAILGIIVYREAEPIQPQPQQLSATLLTLVKYIQPNMYSFPAAAKWAPAS----------CSLAYALNKWFLIFQILVVVLMCSIFLVISTCAVANYRIGKRWRFQLEANGYPLGLL---VIAFVGYVTCFYAKETVAQLTLDVLNESKLNSIFAFSKGELDIVSLTMMMTLGAIGVGTCKGDLEKFKLGAFISYIHVVLSYPSVLATIHAYNSVTYP 370          
BLAST of NO24G01780 vs. NCBI_GenBank
Match: EWM26963.1 (hypothetical protein Naga_101509g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 126.3 bits (316), Expect = 2.600e-25
Identity = 80/244 (32.79%), Postives = 125/244 (51.23%), Query Frame = 0
Query:   52 VLVAPLCLCSFVYTCLYAYIYAREGSYGAQDWQKCLTVPNIGNLH-RDNNRFCTSASNFAGQAYLSVLVAVGGLRMGLKDNDLLWFSWFTCMVGVVGITIFRESYPYFLDPHFMSTTLLTLSKYIHPGMYDNLAASTHLPAELKDKIPSSEVCKTAYQVNLAFLSIQYGVLSLSILLSILCLYALLSRPRRGGARVRMRGREGLVFFGVTAFAGMVTMLISKEKVAELAIQVAAEDAHDTSFPF 295
            ++  P  + S +   +YA+I  R+  Y  +DWQ+CL  PN G     D   F  SA+ FA +A + ++++  G+  GL D+D+L ++ F    G++G+T++RES P   +P  MS TL+TL+K+IHP MY +L A            P   +C  A+  N AFL +QY +L L + L  + +Y +   P R    VR+ G    +        G +  L++KE VA   +QV  E      F F
Sbjct:   29 LVAIPTVMASTILATVYAWIQGRQYGYTVEDWQRCLVSPNKGGFGVGDQTLFTGSAATFAMKAVVFLILSFNGVNAGLIDHDMLPYALFVSFSGLLGMTVYRESSPIQPEPRVMSATLVTLTKFIHPRMYADLPA--------YQGQPEPSLCTHAFHFNQAFLVVQYMMLLLGVGLFSIAVYTIAFSP-RDYLDVRLAGTRATLTLVPVIMTGYLLTLLAKEIVAVETMQVLQESQLGYMFMF 263          
BLAST of NO24G01780 vs. NCBI_GenBank
Match: XP_005853731.1 (hypothetical protein NGA_0163502 [Nannochloropsis gaditana CCMP526] >XP_005854371.1 hypothetical protein NGA_0163501 [Nannochloropsis gaditana CCMP526] >EKU21986.1 hypothetical protein NGA_0163501 [Nannochloropsis gaditana CCMP526] >EKU22627.1 hypothetical protein NGA_0163502 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 114.0 bits (284), Expect = 1.300e-21
Identity = 69/199 (34.67%), Postives = 105/199 (52.76%), Query Frame = 0
Query:   30 RAFKRTSQASQDCLKLLRFVFPVLVAPLCLCSFVYTCLYAYIYAREGSYGAQDWQKCLTVPN-----IGNLHRDNNRFCTSASNFAGQAYLSVLVAVGGLRMGLKDNDLLWFSWFTCMVGVVGITIFRESYPYFLDPHFMSTTLLTLSKYIHPGMYDNLAASTHLPAELKDKIPSSEVCKTAYQVNLAFLSIQYGVLSL 224
            R  +R  Q     L  LR +F V+  PL + +  + C+YA+I+A + SY   DWQ+CL  PN     +G    D   +  +A+++AG+ ++ ++V      +G+KD D+L +S F  M+ ++GI ++RE+ P    P  +S TLLTL KYI P MY   AA+   PA           C  AY +N  FL  Q  V+ L
Sbjct:   49 RLARRYFQIQDRSLTALRILF-VVGIPLTIINISFACVYAWIFANQYSYTKDDWQRCLVYPNQAVDPLGGSTADKTNYLMAAASYAGRVFVFIIVVFKMAYVGVKDTDILPYSLFANMMAILGIIVYREAEPIQPQPQQLSATLLTLVKYIQPNMYSFPAAAKWAPAS----------CSLAYALNKWFLIFQILVVVL 236          
BLAST of NO24G01780 vs. NCBI_GenBank
Match: EWM21737.1 (hypothetical protein Naga_100270g4 [Nannochloropsis gaditana])

HSP 1 Score: 99.4 bits (246), Expect = 3.400e-17
Identity = 85/313 (27.16%), Postives = 143/313 (45.69%), Query Frame = 0
Query:   42 CLKLLRFVFPVLVAPLCLCSFVYTCLYAYIYAREGSY--GAQDWQKCLTVPNIGNLHRDNNRFCTSASNFAGQAYLSVLVAVGGLRMGLKDNDLLWFSWFTCMVGVVGITIFRESYPYFLDPHFMSTTLLTLSKYIHPGMYDNLAASTHLPAELKDKIPSSEVCKTAYQVNLAFLSIQYGVLSLSILLSILCLYALLSRPR--RGGARVRMRGREGLVFFGVTAFAGMVTMLISKEKVAELAIQVAAEDAHDTSFPFLDNNLDLVSLTTLLAIGTSFYAVCKPSLLSLSICTAISAFNAMRSVPGMLGTIAAY 351
            CL LLR +F V V PL + + +Y CLY +I+    +Y      WQ+C+ V N  N +     F  SAS F G  ++ + +      +GL+D DLL +S       ++G  ++R   P       ++ TL++L+ ++ PGMY          A++ D   ++  C+ A +VN++FL+    + + +    +L LYA     R  R    + +  R  L   G+ A A  +  + +KE  A   + +  +  H   FPF    LD V L  LL + +  Y  CK    S    +  +  + + S P ++    AY
Sbjct:  122 CLGLLRKLFYV-VMPLSIVASIYACLYGWIFVNTPTYLQDPTSWQRCI-VYNTNNANATPQNFAVSASAFGGMMFIFMGLGFKAGYLGLQDMDLLPYSLTVTCYTLLGQLVYRPVNPVVPAITELTPTLISLASFLRPGMY----------ADVPD---AAGACQHARRVNVSFLAFVLVLFAANFCNLLLLLYATYRTRRVPRSSRYLLVWHRPALCLVGL-AIAAYIVTIAAKEDAALKTLFLLDKVGHGYLFPFQRPTLDTVGLFLLLTVASVVYGACKQEPESFKWASFTAYVHVLLSYPILISNFQAY 418          
The following BLAST results are available for this feature:
BLAST of NO24G01780 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 6
Match NameE-valueIdentityDescription
EWM24397.12.600e-6578.06hypothetical protein Naga_100283g1 [Nannochloropsi... [more]
EWM26071.11.900e-3630.07hypothetical protein Naga_100278g4 [Nannochloropsi... [more]
EWM26072.12.800e-3533.93hypothetical protein Naga_100278g4 [Nannochloropsi... [more]
EWM26963.12.600e-2532.79hypothetical protein Naga_101509g1, partial [Nanno... [more]
XP_005853731.11.300e-2134.67hypothetical protein NGA_0163502 [Nannochloropsis ... [more]
EWM21737.13.400e-1727.16hypothetical protein Naga_100270g4 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL040nonsL040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002810NSK002810Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G01780.1NO24G01780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598628gene_7402Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G01780.1NO24G01780.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G01780 ID=NO24G01780|Name=NO24G01780|organism=Nannochloropsis oceanica|type=gene|length=2638bp
ATGAAAAAGCCTGGCAGTAATACAGTCAGCAGCTGCAATGTCACCCCTTT
CCAATCACAAGACTTGCGTGCTTCTGGCCTGAAGCGCCGGGCCTTCAAGC
GGACTAGTCAGGCTTCGCAAGACTGCCTGAAGCTCTTACGCTTCGTCTTC
CCAGTGCTCGTCGCGCCTTTATGCCTCTGCTCCTTTGTTTATACGTGCTT
GTATGCCTACATTTACGCCCGGGAAGGCTCGTATGGTGCGCAAGACTGGC
AAAAATGTCTGACGGTTCCGAACATTGgtaagtgaaagttagtggatgac
ggatacaggaacgggtgagagggcagccgacagagtattgagattgagat
cgaatgatgtgaagcatgtacatcttgaactcatgacaacatgtatatac
atgtataatgcaatattatacacatttgaagtacatgtgttatttttttg
ggtgtctcgaggtacccacattcagatcccgttttttcccccttccctcc
tcctccagGCAATTTGCATCGGGACAACAACAGGTTCTGCACCTCTGCTT
CGAATTTTGCAGGTCAAGCCTATCTTTCTGTACTTGTCGCCGTAGGCGGG
CTTCGAATGGGGCTGAAAGACAACGACTTGCTGTGGTTTTCCTGGTTCAC
CTGCATGGTGGGGGTAGTCGGAATTACCATCTTCCGGGAGAGCTATCCgt
gagttctccgccttccctccctccctccctccttcctatttcccatcaaa
atgacgaatcgtaatcctacattttctttcacccttcaccccctcctctc
ctcccccttcccttcctccctccttacctcagGTATTTTCTCGACCCCCA
CTTCATGAGCACCACCCTCCTCACTCTGAGCAAATACATTCATCCGGGAA
TGTACGACAACCTAGCTGCCAGCACTCACCTCCCCGCCGAATTGAAGGAC
AAGATTCCCTCCTCCGAGGTCTGCAAGACTGCCTATCAGgtacgagagta
ccctccctccctccctccctccctccctcctctcttttccagtctgccta
caaactcactcacccgaattcctcccttcctccttatctcctttcctcac
tgcctagGTCAACCTGGCATTTTTGTCGATCCAGTACGGCGTTCTGTCCC
TCTCCATCCTCCTCTCCATCCTTTGTCTCTACGCACTCCTATCGCGGCCT
CGACGCGGAGGGGCCCGCGTCAGGATGAGGGGTAGGGAAGGTCTTGTCTT
CTTCGGCGTCACTGCGTTTGCAGGCATGGTGACCATGTTGATTAGTAAGG
AGAAAGTGGCAGAGCTGGCTATCCAGgtacgcaacgcattcctccttccc
ttcctccttcccgcattccctccttccctctgtatctgtcatcggtgagg
ggggttcggagggaaggagaggaggaagaggagggggagggcaaagacga
ggtcttgtttgatgtagctgttgttcatgttgaggtgccggccgtgcgga
taaatagagagaaaggcagcatggttggccgtgaggtgacggagggaggg
gggagagagggaaggagggatagagggaggggagagagaacaagagagag
gccctcatcaacttcgtatgatttaccctcctccctcctccctccttccc
tccttcactgtctccctccttttctgtctccttccctccttccctccttc
cctcccttcctccctccctccctcagGTAGCGGCTGAGGACGCCCACGAC
ACGTCTTTCCCCTTCCTCGACAACAACCTGGATCTCGTCTCCCTCACCAC
CCTCCTGGCCATCGGCACCTCGTTCTACGCAGTCTGCAAGCCCTCCCTCC
TCTCCCTCTCCATCTGCACGGCTATTAGCGCCTTCAACGCCATGCGCTCT
GTCCCTGGCATGCTTGGAACCATTGCTGCATACTCGGGgtaagcaagccc
tccctccctccctccctgcctgcctgcctgcctgcctgcccacgacagtc
tctactacgatcaacacattctcaatccccccccccccctcccttcctcc
ttcccccgatgcctccctccttcccatcagAATCTACTACCCTAGCCTGG
ATGAAGGTCCGGATGGCAACCACGCCGTCCTCACGGAAACTCACTATGTA
CTATGGAACCGAGCGCAGTGTTCTCAATACGTCCAGGTCACCAACCCGgt
aggtgccctccatccctctatccctacctacccacctcttcatttccact
ggtgtgctttgggacagctcgtgatacctctctccctccctcccgtcctc
cctccctccttcagGGCGCATTCAGTGTGGACCCCAATGCAGACGAGAAT
AGTAGCAACATGTGCTACTACTTTGTGTCCTCCATCACCGGCCAGATTGT
AACCTGGGTGTCGATTCTATCACTCGCCGTGACGGCGTTTTGGGTCATGA
AACACAACCCTAACATCGATAAAGACAGAGAAGTGGAAGAAGAGGAGCGA
TGGGCGGGGAGGAAGGGGGAGGAAGGGGAAAGGGAAGGGTTGCAGAGGCC
ATTGTTGTGGGAAGCAGAGGGGAAGGACGAAGATGAACATGATGAGGACG
TTGGGGTGGGGGGGGAGAGGAGGAGGTGCAAGGGATAG
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protein sequence of NO24G01780.1

>NO24G01780.1-protein ID=NO24G01780.1-protein|Name=NO24G01780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=499bp
MKKPGSNTVSSCNVTPFQSQDLRASGLKRRAFKRTSQASQDCLKLLRFVF
PVLVAPLCLCSFVYTCLYAYIYAREGSYGAQDWQKCLTVPNIGNLHRDNN
RFCTSASNFAGQAYLSVLVAVGGLRMGLKDNDLLWFSWFTCMVGVVGITI
FRESYPYFLDPHFMSTTLLTLSKYIHPGMYDNLAASTHLPAELKDKIPSS
EVCKTAYQVNLAFLSIQYGVLSLSILLSILCLYALLSRPRRGGARVRMRG
REGLVFFGVTAFAGMVTMLISKEKVAELAIQVAAEDAHDTSFPFLDNNLD
LVSLTTLLAIGTSFYAVCKPSLLSLSICTAISAFNAMRSVPGMLGTIAAY
SGIYYPSLDEGPDGNHAVLTETHYVLWNRAQCSQYVQVTNPGAFSVDPNA
DENSSNMCYYFVSSITGQIVTWVSILSLAVTAFWVMKHNPNIDKDREVEE
EERWAGRKGEEGEREGLQRPLLWEAEGKDEDEHDEDVGVGGERRRCKG*
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Synonyms
Publications