NO24G01760, NO24G01760 (gene) Nannochloropsis oceanica

Overview
NameNO24G01760
Unique NameNO24G01760
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1530
Alignment locationchr24:467852..469381 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:467852..469381 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR027124Swc5/CFDP
IPR011421BCNT-C
Homology
[Close]
BLAST of NO24G01760 vs. NCBI_GenBank
Match: CBN79929.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 109.4 bits (272), Expect = 2.100e-20
Identity = 67/165 (40.61%), Postives = 92/165 (55.76%), Query Frame = 0 
Query:  132 LLAGIFGKSTAASIVTGLGEGGREGGREREERQAVLKAHASRTTVTETKKFAGQEVQIKRVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLESVLKEMKGPESISTIAKSSTDWDAYKADKGIEEDLAQATRD--GYLAKKDFLQDCDVRLFERERDERNAHR 295
            +LAGIFGK  A+ IV+G G+G R  G      +  L A + +  VTE KK+AG+++ +KR                                L++VL  + GP+SIST+ KSS DW+ YKA +G+E D+ QAT+D  GYL K+DFLQ CDVR FE E + R + R
Sbjct:   98 VLAGIFGKKAASDIVSGAGKGKRRVGAAEGAARKKLLAASRKVEVTEVKKYAGKDIVVKR-------------KVTAGSAEHVAAAGAKKGGLDNVLAALDGPKSISTVTKSSMDWETYKAAEGMEGDMEQATKDGKGYLNKQDFLQRCDVRKFETELEARQSKR 249
[Close]
BLAST of NO24G01760 vs. NCBI_GenBank
Match: OAO17816.1 (hypothetical protein AV274_0419 [Blastocystis sp. ATCC 50177/Nand II])

HSP 1 Score: 77.0 bits (188), Expect = 1.100e-10
Identity = 47/144 (32.64%), Postives = 74/144 (51.39%), Query Frame = 0 
Query:  155 EGGREREERQAVLKAHASRTTVTETKKFAGQEVQIKRVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLESVLKEMKGPESISTIAKSSTDWDAYKADKGIEEDLAQATRDGYLAKKDFLQDCDVRLFERERDERNAHRARQE 299
            E GR  E     L    S+T  T   KFAG++++++                                 L+++++ ++  +SISTI KSS DWD +K  +GI+E++  A +DGY+ K++FL   D R+FE+ERD+R   R RQE
Sbjct:  124 ELGRSIESAIKELNQSKSKTAKTRVVKFAGEKIELE-------------------------DKANSAGTLDTLVQSLEAKKSISTIDKSSYDWDKFKDAEGIKEEVENAKKDGYIDKQEFLHRVDYRIFEKERDQRELERIRQE 242
[Close]
BLAST of NO24G01760 vs. NCBI_GenBank
Match: XP_008610892.1 (hypothetical protein SDRG_06864 [Saprolegnia diclina VS20] >EQC35575.1 hypothetical protein SDRG_06864 [Saprolegnia diclina VS20])

HSP 1 Score: 74.7 bits (182), Expect = 5.600e-10
Identity = 67/221 (30.32%), Postives = 99/221 (44.80%), Query Frame = 0 
Query:   74 AQEERKKRMESIWAEMQKNDKINVSTVVMGKRKACEAGKESGDGVEKKKKQHYKKARALLAGIFGKSTAASIVTGLGEGGREGGREREERQAVLKAHASRTTVTETKKFAGQEVQIKRVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLESVLKEMKGPESISTIAKSSTDWDAYKADKGIEEDLAQATRDGYLAKKDFLQDCDVRLFERERDERNAHR 295
            A    K++++ +WA+M  +  ++ ++      K  +   +   G  KKKK    K R     I G S       G   GG           A LK  A   TVT+  KFAGQE  +K+                                L++++  ++ P+ +STI KSS DWD++K  +GI ++L Q T+DGYL KKDFL   D+R FE E+ ER   R
Sbjct:   57 ATNASKRKVDDLWADMNADTAVSATST----SKTAKLLHKLVQGPPKKKKT--TKVREFHMPIMGCS-------GKSRGG-----------APLKQDA---TVTQVLKFAGQEYTVKK------------------------SAADKKTGLDAIVDALQQPKKVSTIEKSSMDWDSFKEKEGIVDELEQYTKDGYLEKKDFLHRVDLRKFELEKAEREKVR 226
[Close]
BLAST of NO24G01760 vs. NCBI_GenBank
Match: POM57882.1 (Hypothetical protein PHPALM_37549 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 74.7 bits (182), Expect = 5.600e-10
Identity = 34/75 (45.33%), Postives = 54/75 (72.00%), Query Frame = 0 
Query:  224 LESVLKEMKGPESISTIAKSSTDWDAYKADKGIEEDLAQATRDGYLAKKDFLQDCDVRLFERERDERNAHRARQE 299
            L+ VL+ +  P+ +ST+ K+S DWD +K ++GIEE+L Q T+DGY+ K++FLQ  D++ FE E+ ER+  R  Q+
Sbjct:  279 LDKVLETLDEPKKVSTMEKTSLDWDKFKENEGIEEELTQYTKDGYIEKQEFLQRLDLKRFEIEKAERDKQRKLQQ 353
[Close]
BLAST of NO24G01760 vs. NCBI_GenBank
Match: POM74408.1 (Hypothetical protein PHPALM_8644 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 74.7 bits (182), Expect = 5.600e-10
Identity = 34/75 (45.33%), Postives = 54/75 (72.00%), Query Frame = 0 
Query:  224 LESVLKEMKGPESISTIAKSSTDWDAYKADKGIEEDLAQATRDGYLAKKDFLQDCDVRLFERERDERNAHRARQE 299
            L+ VL+ +  P+ +ST+ K+S DWD +K ++GIEE+L Q T+DGY+ K++FLQ  D++ FE E+ ER+  R  Q+
Sbjct:  141 LDKVLETLDEPKKVSTMEKTSLDWDKFKENEGIEEELTQYTKDGYIEKQEFLQRLDLKRFEIEKAERDKQRKLQQ 215
[Close]
BLAST of NO24G01760 vs. NCBI_GenBank
Match: XP_001641275.1 (predicted protein [Nematostella vectensis] >EDO49212.1 predicted protein [Nematostella vectensis])

HSP 1 Score: 73.6 bits (179), Expect = 1.300e-9
Identity = 37/71 (52.11%), Postives = 48/71 (67.61%), Query Frame = 0 
Query:  224 LESVLKEMKGPESISTIAKSSTDWDAYKADKGIEEDLAQATRDGYLAKKDFLQDCDVRLFERERDERNAHR 295
            L SVL ++     IST+ KS  DW+ +KA++GIE+DL    +DGYL K+DFLQ  DVRLFERE+  R   R
Sbjct:  228 LGSVLGQIGKKPKISTLEKSKLDWETFKAEEGIEDDLKNYNKDGYLEKQDFLQRTDVRLFEREKAARQGSR 298
[Close]
BLAST of NO24G01760 vs. NCBI_GenBank
Match: XP_008890896.1 (hypothetical protein PPTG_01051 [Phytophthora parasitica INRA-310] >ETI56168.1 hypothetical protein F443_01242 [Phytophthora parasitica P1569] >ETL49346.1 hypothetical protein L916_01155 [Phytophthora parasitica] >ETM02401.1 hypothetical protein L917_01125 [Phytophthora parasitica] >ETN24876.1 hypothetical protein PPTG_01051 [Phytophthora parasitica INRA-310] >ETO84913.1 hypothetical protein F444_01240 [Phytophthora parasitica P1976] >ETP25974.1 hypothetical protein F441_01216 [Phytophthora parasitica CJ01A1] >ETP53982.1 hypothetical protein F442_01175 [Phytophthora parasitica P10297])

HSP 1 Score: 72.4 bits (176), Expect = 2.800e-9
Identity = 33/75 (44.00%), Postives = 52/75 (69.33%), Query Frame = 0 
Query:  224 LESVLKEMKGPESISTIAKSSTDWDAYKADKGIEEDLAQATRDGYLAKKDFLQDCDVRLFERERDERNAHRARQE 299
            L+ VL+ +  P+ +ST+ KSS DWD +K  +GIE++L   T+DGY+ K++FLQ  D++ FE E+ ER+  R  Q+
Sbjct:  144 LDKVLESLDEPKKVSTMEKSSLDWDKFKEKEGIEDELTHYTKDGYIEKQEFLQRLDLKRFEIEKAERDKQRKLQQ 218
[Close]
BLAST of NO24G01760 vs. NCBI_GenBank
Match: ETK95965.1 (hypothetical protein L915_01171 [Phytophthora parasitica] >ETM55646.1 hypothetical protein L914_01164 [Phytophthora parasitica])

HSP 1 Score: 72.4 bits (176), Expect = 2.800e-9
Identity = 33/75 (44.00%), Postives = 52/75 (69.33%), Query Frame = 0 
Query:  224 LESVLKEMKGPESISTIAKSSTDWDAYKADKGIEEDLAQATRDGYLAKKDFLQDCDVRLFERERDERNAHRARQE 299
            L+ VL+ +  P+ +ST+ KSS DWD +K  +GIE++L   T+DGY+ K++FLQ  D++ FE E+ ER+  R  Q+
Sbjct:  276 LDKVLESLDEPKKVSTMEKSSLDWDKFKEKEGIEDELTHYTKDGYIEKQEFLQRLDLKRFEIEKAERDKQRKLQQ 350
[Close]
BLAST of NO24G01760 vs. NCBI_GenBank
Match: XP_002908493.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY61576.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 72.4 bits (176), Expect = 2.800e-9
Identity = 33/75 (44.00%), Postives = 52/75 (69.33%), Query Frame = 0 
Query:  224 LESVLKEMKGPESISTIAKSSTDWDAYKADKGIEEDLAQATRDGYLAKKDFLQDCDVRLFERERDERNAHRARQE 299
            L+ VL+ +  P+ +ST+ KSS DWD +K  +GIE++L   T+DGY+ K++FLQ  D++ FE E+ ER+  R  Q+
Sbjct:  143 LDKVLESLDEPKKVSTMEKSSLDWDKFKEKEGIEDELTHYTKDGYIEKQEFLQRLDLKRFEIEKAERDKQRKLQQ 217
[Close]
BLAST of NO24G01760 vs. NCBI_GenBank
Match: OQS03364.1 (hypothetical protein THRCLA_04333 [Thraustotheca clavata])

HSP 1 Score: 72.4 bits (176), Expect = 2.800e-9
Identity = 62/219 (28.31%), Postives = 98/219 (44.75%), Query Frame = 0 
Query:   79 KKRMESIWAEMQKNDKINVSTVVMGKRKACEAGKESGDGVEKKKKQHYKKARALLAGIFGKSTAASIVTGLGEGGREGGREREERQAVLKAHASRTTVTETKKFAGQEVQIKRVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLESVLKEMKGPESISTIAKSSTDWDAYKADKGIEEDLAQATRDGYLAKKDFLQDCDVRLFERERDERNAHRARQ 298
            K++++S+W E+     ++ ++    K+   + G+E     EKKKK+ Y+    ++ G  GKS     V                         S   VT+  KFAG+E  ++                                 L++V+  ++ P+ ISTI KSS DWD++K  +GI ++L Q T++GYL KKDFL   D+R FE E+ ER   R  Q
Sbjct:   57 KRKIDSVWEELNAESTVSSTSNEKSKKLLQKLGREPR---EKKKKKVYEFKMPIM-GCSGKSKGNVPV------------------------KSTEKVTKVMKFAGKEYTME------------------------AQAPIKKTGLDAVVDALQQPKKISTIEKSSMDWDSFKEKEGIADELEQYTKNGYLDKKDFLNRVDLRKFEIEKAEREKLRRAQ 223
The following BLAST results are available for this feature:
BLAST of NO24G01760 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBN79929.12.100e-2040.61conserved unknown protein [Ectocarpus siliculosus][more]
OAO17816.11.100e-1032.64hypothetical protein AV274_0419 [Blastocystis sp. ... [more]
XP_008610892.15.600e-1030.32hypothetical protein SDRG_06864 [Saprolegnia dicli... [more]
POM57882.15.600e-1045.33Hypothetical protein PHPALM_37549 [Phytophthora pa... [more]
POM74408.15.600e-1045.33Hypothetical protein PHPALM_8644 [Phytophthora pal... [more]
XP_001641275.11.300e-952.11predicted protein [Nematostella vectensis] >EDO492... [more]
XP_008890896.12.800e-944.00hypothetical protein PPTG_01051 [Phytophthora para... [more]
ETK95965.12.800e-944.00hypothetical protein L915_01171 [Phytophthora para... [more]
XP_002908493.12.800e-944.00conserved hypothetical protein [Phytophthora infes... [more]
OQS03364.12.800e-928.31hypothetical protein THRCLA_04333 [Thraustotheca c... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL040nonsL040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002812NSK002812Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G01760.1NO24G01760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|531381gene_7399Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G01760.1NO24G01760.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G01760 ID=NO24G01760|Name=NO24G01760|organism=Nannochloropsis oceanica|type=gene|length=1530bp
GCTTCCGCCACCTTTTTGATCTGTCAAGGTGTACGTGAGATGGTGTGTGC
GTGCATAAGCTGTGTGTCGGGATGGACTGAAGACAGTGATGAAATATATG
CCAAGCCCTTCATCACATGCAGCGTATCATCGATCATGCCTTGCGGCTCC
GCGCCTCCGGCGAGATGTTGCCGCTAATTTTCTGTTTTCCTTGTTTCCAA
CACTCATTTTGATGCACACTCATATACCCCCGGCCCACAGTTCAGGAAGC
TCACGACATGGCGCGCACGGCCAAGGATAAGGAAGAGGAGCAGAAGCAGG
AGAAGCAAAAGCAAGGGAATGGGCAAGAGGAGGACGACGATGGGGACGAC
AGCTCGGATGAGGACTACGTGCCACCTGCAGgtgcgtgtatttgtgtgta
tatccattttttctccttctatttttgtttgtggcggtcgtcagtaggca
gtaattctcgtactgcattcatgctgtaatgagacctccctgcccctccc
tgtaggccctcccctccctccctccctccctctctcttccagagggggag
taatgctggcacttgctccgcagtgctgaaacgacgctttttaaaattac
gccataccttcactggtgtgcatcattccttattcatcatgtccacccat
tctccctttctccctccctccctccctcccttcctctctttcccctactc
tctctcactttctagACGACGGAGACGATGCCCCAGGAGTGGGTATCCGC
GGCCGTATCAACGCCGCAGACGACGGTCGAGAAACCCTCGCCCGGCCCGG
CACACAACGAGCTCAAGAAGAACGCAAAAAGCGAATGGAAAGTATCTGGG
CGGAGATGCAAAAGAACGATAAAATCAACGTATCAACCGTCGTGATGGGA
AAGAGAAAGGCATGTGAGGCAGGAAAGGAGAGCGGGGATGGAGTAGAGAA
GAAAAAAAAACAGCACTACAAGAAGGCCCGTGCTTTGCTGGCCGGTATCT
TTGGGAAGAGCACCGCGGCGTCGATAGTGACGGGCCTTGGAGAGGGAGGG
AGGGAGGGAGGAAGGGAGAGGGAGGAGAGGCAAGCAGTGTTGAAGGCACA
TGCCTCAAGGACAACGGTCACGGAGACGAAGAAATTCGCGGGGCAAGAGG
TGCAGATTAAAAGGGTGGTCGTAGGATCTGCAGCAGCAGCGGCGGCGGCG
GCAGCAGCAGCAGCATCGATGGCAGCAGCGACGAATGGAGGCACAAAAAA
AGGCGGGGGTTTGGAGTCGGTGCTGAAGGAAATGAAGGGTCCCGAGAGCA
TAAGCACTATTGCGAAAAGCAGCACGGATTGGGATGCCTACAAGGCTGAT
AAGGGAATTGAGGAGGACCTGGCCCAGGCGACGAGAGATGGGTATTTGGC
GAAGAAGGATTTCTTGCAAGATTGTGACGTGAGGCTTTTTGAACGGGAGA
GGGATGAGAGGAACGCACATCGGGCTAGGCAGGAGGTTGGGGGTGGTGGA
GGGGAGGAGGAGGGGGTTGTGATGAAGTGA
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protein sequence of NO24G01760.1

>NO24G01760.1-protein ID=NO24G01760.1-protein|Name=NO24G01760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=313bp
MARTAKDKEEEQKQEKQKQGNGQEEDDDGDDSSDEDYVPPADDGDDAPGV
GIRGRINAADDGRETLARPGTQRAQEERKKRMESIWAEMQKNDKINVSTV
VMGKRKACEAGKESGDGVEKKKKQHYKKARALLAGIFGKSTAASIVTGLG
EGGREGGREREERQAVLKAHASRTTVTETKKFAGQEVQIKRVVVGSAAAA
AAAAAAAASMAAATNGGTKKGGGLESVLKEMKGPESISTIAKSSTDWDAY
KADKGIEEDLAQATRDGYLAKKDFLQDCDVRLFERERDERNAHRARQEVG
GGGGEEEGVVMK*
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Synonyms
Publications