NO24G01740, NO24G01740 (gene) Nannochloropsis oceanica

Overview
NameNO24G01740
Unique NameNO24G01740
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length699
Alignment locationchr24:461404..462102 -

Link to JBrowse

Properties
Property NameValue
DescriptionAnkyrin repeat protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:461404..462102 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
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BLAST of NO24G01740 vs. NCBI_GenBank
Match: EWM24378.1 (ankyrin repeat protein [Nannochloropsis gaditana])

HSP 1 Score: 218.4 bits (555), Expect = 2.400e-53
Identity = 106/192 (55.21%), Postives = 148/192 (77.08%), Query Frame = 0 
Query:   20 DVDLLMTELAVDVTRRERLVQATRAGDVPTVAALLELDHSLLHHTLNRKTSLLVLAVENGHYGMSEFLLKRGIDANKVCHARRTAIHRAAALPEALALPLLHLLVLHGARLNPPCNSYAFGWLSPLHTAVEKRRVGNVRALVELGSDVKGRDGRHMTPLDLCGRQSGIAKAIKEGLGMRWIRETMRKLLVLS 212
            +VDL+M E  V   R+E L+ ATR GDV TVA LLE D+SLL+HT++RKTSLLV+AV++GH+ + EFL+++G++ NK+C+A  TA+H AA LP++ A+PL+HLLV HGA LNPP ++  +GW SPLH AVEK+R+G VR LV +GS + GR+GR  TPL LCG+ S +AKA+ EG  ++ +R  +R+L +LS
Sbjct:   15 EVDLVMAEF-VTAARQECLIAATRRGDVSTVAELLEQDNSLLYHTIHRKTSLLVVAVKHGHHALCEFLIRKGVEVNKICNAGLTAVHHAAMLPDSQAIPLIHLLVKHGAHLNPPPHTRRYGWQSPLHLAVEKKRLGAVRELVAMGSSIFGRNGRQQTPLALCGQFSAVAKAMDEGFRLQRLRSLIRRLFLLS 205
The following BLAST results are available for this feature:
BLAST of NO24G01740 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24378.12.400e-5355.21ankyrin repeat protein [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL040nonsL040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002820NSK002820Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G01740.1NO24G01740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100313g5gene6099Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G01740.1NO24G01740.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G01740 ID=NO24G01740|Name=NO24G01740|organism=Nannochloropsis oceanica|type=gene|length=699bp
ATGGCCCACTCACAACCACCACCTCAGCAGCAACAGCATCAACAACTGCA
AGAACAGGATGTGGACTTACTCATGACGGAGCTAGCCGTAGACGTCACCC
GTCGCGAGCGTTTGGTCCAGGCCACCCGTGCCGGGGACGTCCCCACTGTA
GCCGCCTTGCTCGAGCTCGACCATTCCCTCCTCCACCACACGTTGAATCG
TAAAACAAGTCTTCTGGTGCTCGCCGTCGAAAATGGCCACTACGGCATGA
GCGAATTTTTGCTCAAACGCGGCATTGACGCGAACAAGGTCTGTCACGCT
CGTCGGACGGCCATTCATCGCGCCGCCGCCCTTCCGGAAGCCCTTGCCCT
CCCCCTCCTTCACCTTCTCGTCCTGCACGGCGCCCGTCTTAACCCTCCAT
GCAACAGCTATGCTTTTGGATGGCTTTCCCCTCTGCATACAGCAGTAGAA
AAACGACGGGTGGGGAATGTACGGGCATTGGTGGAGTTGGGAAGTGATGT
AAAAGGAAGGGATGGGAGGCATATGACTCCATTAGATCTATGTGGACGAC
AATCAGGGATAGCGAAAGCAATCAAGGAAGGGCTGGGAATGAGATGGATA
AGGGAGACAATGCGGAAGCTGTTGGTGTTGAGTGTGTTGATGGGGAGAGA
GGAAGGAAGAAAGGGGAAACGGGGGGAAGTGGTGGTGGTGATTGTGTAA
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protein sequence of NO24G01740.1

>NO24G01740.1-protein ID=NO24G01740.1-protein|Name=NO24G01740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=233bp
MAHSQPPPQQQQHQQLQEQDVDLLMTELAVDVTRRERLVQATRAGDVPTV
AALLELDHSLLHHTLNRKTSLLVLAVENGHYGMSEFLLKRGIDANKVCHA
RRTAIHRAAALPEALALPLLHLLVLHGARLNPPCNSYAFGWLSPLHTAVE
KRRVGNVRALVELGSDVKGRDGRHMTPLDLCGRQSGIAKAIKEGLGMRWI
RETMRKLLVLSVLMGREEGRKGKRGEVVVVIV*
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Synonyms
Publications