NO24G01550, NO24G01550 (gene) Nannochloropsis oceanica

Overview
NameNO24G01550
Unique NameNO24G01550
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1919
Alignment locationchr24:410706..412624 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:410706..412624 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO24G01550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL040nonsL040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002838NSK002838Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G01550.1NO24G01550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|132697gene_7378Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G01550.1NO24G01550.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G01550 ID=NO24G01550|Name=NO24G01550|organism=Nannochloropsis oceanica|type=gene|length=1919bp
ATGGGCCAAACTCTCTCTACCTTGGGTGGGGTGGTGGGATACAAGCACGA
GTACCGCACGGGTCCTGACGGCGTCGCTAAAACATTTGTCACTGTCCTGG
ACACAAGCGTCTTCAAGAGGAAAATCAAGCTGCAGCTTGCCATTGTGCAC
GAGCCACAACAGGAAGAAGATTTTGCTACTGGTGCCGCCACTGCTGTCGC
GGCTGCTATCGCTGCTGCGACTGCTGAAGACAGAGAAGCAGCGCCTCGCC
TCGATTTGATCCAAGAAGCCGTCGATGACGAGTCCACTCAGCCTCCGGCC
GATGATGACCGACGAGAAGACCACGAACTCCCGCCCTTGGCCTTTGTGGA
TGAAGAGGACGATAACAGCAGCACTACCAGCAGTACCAAGTTATACCCGC
AACCCTATCCTTCTCGCCGGGCCTTCTCCACTGGAACTGCGGACAAAGCC
CCAGAGATGACTATGATACCCTCGCGACAGTTGCGCCGAGCTCGACCCCA
GTCTGTGGGGGATCTTGGTAGCGGAACAGGAGGCAGGCTTTCAGTACAGA
CAGTGTCGGATGTAGTGACCATTGCGGGAAGAAACGGCAAACAACGAATG
ATGAACCGCGTGCGGCTTAGTTTGCATGACCAGGAGGAAATTATATTGAT
TCCCGTGTGGCCGTCGTCGAAGGAGGAGGAGGAAGGGACGGAGGGAGGCT
TGGGAGGGGTGGATGGTGAGGGGAAGGATAAGGAGGACGACTTACGGGCG
CAGCGTCCAAGTCGTTGTCAATCAGTGACAGTTAGCCTGGATGCTAGAGA
GCAGCTGACAGAAGAGGGGAGAGCGCGGAGGAAGGAAGAGGGAGCGAAAG
GGAACGAAGAGGAGCAGAAGCTGAGCTTGGAGATCGAGCAGGTGGAGGGC
TTTCAACCCCTTGGTGTCATGACACATTATGCGGCCTCGGCGATAGCCAC
gtgagtttttttgtcggcggtatggaatgcctgcctagggataaacggtg
tttctacctcttttctacctcacgtcatgtacacatgcctgtctatatct
tccctcgcgtcaacaagacgatgacctcgctcattcttcgcttatcccta
ccctactactgatacagTGTGACCACTAACGCCCAACTGGAGGCCGCCGT
TCTCCGTCTCTGCAGCGCATATCATAAAGACGAAGCAGCCCCAACCGTTG
TCTCCCACAAGCGGGACATCAAAATCATCACAGGTTTTCTCTCACGCTTA
ATCCTCCCTGCGTCCCAGGCCAACAACAACAGCAATCATAGCAGCACCAG
CGCCAGTAGCGGCAGCAGTATCACCAAAGCTATTCCTTCTTCTCCCGTGG
CAGACGTCCTACCTATGGACATGGCCTTGCTCAACCCCTCGTCCTCCCCT
CCTCTCTCATCCCCTTCCTCCGTCTCCATCTCCTCATCGCATATACTCGT
CCCACCCCCGCCTCTCTCACCTTATACTCATGAACCAATTGTCGAAAAGT
CCTCCAGTGGTCTCACAGCTGCTACAACTACTGCTGCTGCTGGCAAGGCT
GGCAACGGGATCGAAAAGCAAAAGGAGCTCAAGATTATTACGAGCCAAGC
TGGAGAAAGTGGTACCACGCCGACGCTCCCACTCAAAACCAAACGACATC
GCAAGATTCGATTGAGCGCCTCTAGCTTTGAGCAACTTCAAGCCTCGGCC
GATGATGGCGGGGCTTTGTTTGATGACCTTTGGGATGTTAAGTCCGCTAC
TGCTTCCTCCTCCTCTTCCTCCACCTCCTCCCCTTTTTCTGCTTTGCGAA
AGCTAGTTAAGACATCTTCCGCGCGGATGACACAGAATGGGTATATCCTC
CCACCAGACGACGATGACACAGAGGAGGATGAGGCAGAAGGCCGTCGCGA
TCTGATTTTTGATGACTAG
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protein sequence of NO24G01550.1

>NO24G01550.1-protein ID=NO24G01550.1-protein|Name=NO24G01550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=584bp
MGQTLSTLGGVVGYKHEYRTGPDGVAKTFVTVLDTSVFKRKIKLQLAIVH
EPQQEEDFATGAATAVAAAIAAATAEDREAAPRLDLIQEAVDDESTQPPA
DDDRREDHELPPLAFVDEEDDNSSTTSSTKLYPQPYPSRRAFSTGTADKA
PEMTMIPSRQLRRARPQSVGDLGSGTGGRLSVQTVSDVVTIAGRNGKQRM
MNRVRLSLHDQEEIILIPVWPSSKEEEEGTEGGLGGVDGEGKDKEDDLRA
QRPSRCQSVTVSLDAREQLTEEGRARRKEEGAKGNEEEQKLSLEIEQVEG
FQPLGVMTHYAASAIATVTTNAQLEAAVLRLCSAYHKDEAAPTVVSHKRD
IKIITGFLSRLILPASQANNNSNHSSTSASSGSSITKAIPSSPVADVLPM
DMALLNPSSSPPLSSPSSVSISSSHILVPPPPLSPYTHEPIVEKSSSGLT
AATTTAAAGKAGNGIEKQKELKIITSQAGESGTTPTLPLKTKRHRKIRLS
ASSFEQLQASADDGGALFDDLWDVKSATASSSSSSTSSPFSALRKLVKTS
SARMTQNGYILPPDDDDTEEDEAEGRRDLIFDD*
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Synonyms
Publications