NO24G01460, NO24G01460 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO24G01460 vs. NCBI_GenBank
Match: EWM24350.1 (transcription factor tfiiib component [Nannochloropsis gaditana]) HSP 1 Score: 203.8 bits (517), Expect = 6.100e-49 Identity = 106/136 (77.94%), Postives = 119/136 (87.50%), Query Frame = 0 Query: 102 GPQVEIVNGQIVINQKSLEVVSRPEEAGEEGWMEEVIEDPQQAATYNSFTTRTKATRWTEAETRSFYQALRQCGTDFTTMASLLFDGKRDRAQLKNKFKKEEKAHGALVYRYLDSTQPL-VVPPGIGEEEEGGRGE 237 GP+VE+V+GQIVINQKSLEVV+RPE+ G EG MEEV EDPQQAATYNSFT+RT+ATRWT+AETR FYQALRQCGTDFTTMASLLF G+RDRAQLKNKFKKEEK HG LVY+YLDSTQPL V+ G+ + G GE Sbjct: 164 GPRVELVDGQIVINQKSLEVVARPEDGG-EGAMEEVTEDPQQAATYNSFTSRTRATRWTDAETRLFYQALRQCGTDFTTMASLLFAGRRDRAQLKNKFKKEEKQHGVLVYKYLDSTQPLPVLEAGVHDGRGEGSGE 298
BLAST of NO24G01460 vs. NCBI_GenBank
Match: XP_002176806.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC51269.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 84.7 bits (208), Expect = 4.200e-13 Identity = 49/116 (42.24%), Postives = 69/116 (59.48%), Query Frame = 0 Query: 102 GPQVEIVNGQIVINQKSLEVVSRPEEAGEEGWMEEVIEDPQQAATYNSFTTRTKATRWTEAETRSFYQALRQCGTDFTTMASLLFDGKRDRAQLKNKFKKEEKAHGALVYRYLDST 218 GP V++VNG+IV+ + S+ V + +E E +EE + A+YNSFT R K W ET+ FY+ALRQ G DF TM + F+ +R R QLK K++KE + L+ LD T Sbjct: 220 GPVVKVVNGEIVLQESSMVVNASSKEVEEFPVVEEEAQLAVVGASYNSFTNRKKPQHWNVVETQLFYEALRQVGLDFGTMEA-YFENRRTRKQLKRKYQKESSKNPHLIEAALDPT 334
BLAST of NO24G01460 vs. NCBI_GenBank
Match: GAX14400.1 (transcription factor TFIIIB component B'' [Fistulifera solaris]) HSP 1 Score: 84.3 bits (207), Expect = 5.400e-13 Identity = 54/118 (45.76%), Postives = 73/118 (61.86%), Query Frame = 0 Query: 102 GPQVEIVNGQIVINQKSLEVVSRPEEAGEEGWMEEVIEDPQQ----AATYNSFTTRTKATRWTEAETRSFYQALRQCGTDFTTMASLLFDGKRDRAQLKNKFKKEEKAHGALVYRYLD 216 GP V+IVNG+IV+ + S+ V++R A E+ V+E+ Q AT +SFT R K+ RWT +TR FYQALRQ GTDF TM + F KR R QLK K++ E + L+ + LD Sbjct: 192 GPVVQIVNGEIVLQESSV-VINRANRADEDA---SVVEEEAQLAVVGATAHSFTNRNKSQRWTADQTRLFYQALRQVGTDFGTMEA-FFQEKRTRKQLKRKYQAELIRNPRLIEKALD 304
BLAST of NO24G01460 vs. NCBI_GenBank
Match: GAX09878.1 (transcription factor TFIIIB component B'' [Fistulifera solaris]) HSP 1 Score: 82.8 bits (203), Expect = 1.600e-12 Identity = 53/118 (44.92%), Postives = 72/118 (61.02%), Query Frame = 0 Query: 102 GPQVEIVNGQIVINQKSLEVVSRPEEAGEEGWMEEVIEDPQQ----AATYNSFTTRTKATRWTEAETRSFYQALRQCGTDFTTMASLLFDGKRDRAQLKNKFKKEEKAHGALVYRYLD 216 GP V+IVNG+IV+ + S+ V++R E+ V+E+ Q AT +SFT R K+ RWT +TR FYQALRQ GTDF TM + F KR R QLK K++ E + L+ + LD Sbjct: 209 GPVVQIVNGEIVLQESSV-VINRANRGDEDA---SVVEEEAQLAVVGATAHSFTNRNKSQRWTADQTRLFYQALRQVGTDFGTMEA-FFQEKRTRKQLKRKYQAELIRNPRLIEKALD 321
BLAST of NO24G01460 vs. NCBI_GenBank
Match: XP_002115588.1 (hypothetical protein TRIADDRAFT_59457 [Trichoplax adhaerens] >EDV21951.1 hypothetical protein TRIADDRAFT_59457 [Trichoplax adhaerens]) HSP 1 Score: 80.5 bits (197), Expect = 7.900e-12 Identity = 51/119 (42.86%), Postives = 70/119 (58.82%), Query Frame = 0 Query: 103 PQVEI-VNGQIVINQKSLEVVSRPEEAGEEGWMEEVIEDPQQAATYNSFTTRTKATRWTEAETRSFYQALRQCGTDFTTMASLLFDGKRDRAQLKNKFKKEEKAHGALVYRYLDSTQPL 221 PQV I NG+I++N+ SL V E A E + VI++ TY S+ ++ RW ET FY+AL Q GTDF+ M L+F KRDR +LKNKFK+E++ + LV + L PL Sbjct: 361 PQVSIGPNGKIILNEDSLVV----EAASETYELAAVIDESDALPTYRSYKKKSTTDRWNVGETNKFYRALSQVGTDFSLMRRLVFP-KRDRNELKNKFKREDRFNRELVNQALRKRLPL 474
BLAST of NO24G01460 vs. NCBI_GenBank
Match: XP_019640610.1 (PREDICTED: uncharacterized protein LOC109482360 [Branchiostoma belcheri]) HSP 1 Score: 80.5 bits (197), Expect = 7.900e-12 Identity = 54/118 (45.76%), Postives = 73/118 (61.86%), Query Frame = 0 Query: 103 PQVEIV-NGQIVINQKSLEVVSRPEEAGEEGWMEEVIEDPQQAATYNSFTTRTKATR-WTEAETRSFYQALRQCGTDFTTMASLLFDGKRDRAQLKNKFKKEEKAHGALVYRYLDSTQ 219 PQV + +G IV+N++SL VS P +AG +G +++ + + TY+SF + T+ W ET FY+AL GTDFT MA++L KR RAQLK KFKKEEK + LV R L Q Sbjct: 385 PQVRVAEDGTIVLNEQSL-TVSTPAKAGSDG---DIVREDESNTTYSSFRKKVPQTQAWNMKETIKFYKALSTVGTDFTLMAAML--PKRTRAQLKAKFKKEEKQNRNLVDRALSLRQ 496
BLAST of NO24G01460 vs. NCBI_GenBank
Match: XP_015790027.1 (PREDICTED: transcription factor TFIIIB component B'' homolog [Tetranychus urticae]) HSP 1 Score: 79.0 bits (193), Expect = 2.300e-11 Identity = 45/116 (38.79%), Postives = 72/116 (62.07%), Query Frame = 0 Query: 101 VGPQVEI-VNGQIVINQKSLEVVSRPEEAGEEGWMEEVIEDPQQA-ATYNSFTTRTKATRWTEAETRSFYQALRQCGTDFTTMASLLFDGKRDRAQLKNKFKKEEKAHGALVYRYL 215 +GP+V++ +G+++I+++SL V+ +P+ E IE+P TY+SF R RWT+ ET FY AL G DF+ M++L F+GKR R LKNKF++E K + ++ + L Sbjct: 316 IGPRVKVGPDGELIIDEESL-VIKKPKPV-----ERETIEEPAYGKTTYSSFRKRPPTVRWTKTETIEFYTALNLIGPDFSLMSNLFFNGKRSRTDLKNKFRRENKLNKTVIDKAL 425
BLAST of NO24G01460 vs. NCBI_GenBank
Match: XP_015790299.1 (PREDICTED: transcription factor TFIIIB component B'' homolog [Tetranychus urticae]) HSP 1 Score: 79.0 bits (193), Expect = 2.300e-11 Identity = 45/116 (38.79%), Postives = 72/116 (62.07%), Query Frame = 0 Query: 101 VGPQVEI-VNGQIVINQKSLEVVSRPEEAGEEGWMEEVIEDPQQA-ATYNSFTTRTKATRWTEAETRSFYQALRQCGTDFTTMASLLFDGKRDRAQLKNKFKKEEKAHGALVYRYL 215 +GP+V++ +G+++I+++SL V+ +P+ E IE+P TY+SF R RWT+ ET FY AL G DF+ M++L F+GKR R LKNKF++E K + ++ + L Sbjct: 316 IGPRVKVGPDGELIIDEESL-VIKKPKPV-----ERETIEEPAYGKTTYSSFRKRPPTVRWTKTETIEFYTALNLIGPDFSLMSNLFFNGKRSRTDLKNKFRRENKLNKTVIDKAL 425
BLAST of NO24G01460 vs. NCBI_GenBank
Match: CEG81477.1 (hypothetical protein RMATCC62417_15677 [Rhizopus microsporus]) HSP 1 Score: 78.2 bits (191), Expect = 3.900e-11 Identity = 52/116 (44.83%), Postives = 69/116 (59.48%), Query Frame = 0 Query: 103 PQVEIVNGQIVINQKSLEVVSRPEEAGE--EGWMEEVIEDPQQAATYNSFT--TRTKATRWTEAETRSFYQALRQCGTDFTTMASLLFDGKRDRAQLKNKFKKEEKAHGALVYRYL 215 PQV IVNGQIV++ +SL V R + GE EG M E++E+ NS T R ++RW+ AET +FY L Q GTDF T++ + R RAQ++ KF KEEK H + YL Sbjct: 474 PQVRIVNGQIVLDTESL-TVERSQAGGEIYEGDM-EIVEESAMTRKVNSHTYGKRQPSSRWSAAETEAFYDLLSQFGTDFETISKAM--PNRSRAQIRLKFNKEEKLHPEKITEYL 585
BLAST of NO24G01460 vs. NCBI_GenBank
Match: CEG65987.1 (hypothetical protein RMATCC62417_02649 [Rhizopus microsporus]) HSP 1 Score: 78.2 bits (191), Expect = 3.900e-11 Identity = 52/116 (44.83%), Postives = 69/116 (59.48%), Query Frame = 0 Query: 103 PQVEIVNGQIVINQKSLEVVSRPEEAGE--EGWMEEVIEDPQQAATYNSFT--TRTKATRWTEAETRSFYQALRQCGTDFTTMASLLFDGKRDRAQLKNKFKKEEKAHGALVYRYL 215 PQV IVNGQIV++ +SL V R + GE EG M E++E+ NS T R ++RW+ AET +FY L Q GTDF T++ + R RAQ++ KF KEEK H + YL Sbjct: 461 PQVRIVNGQIVLDTESL-TVERSQAGGEIYEGDM-EIVEESAMTRKVNSHTYGKRQPSSRWSAAETEAFYDLLSQFGTDFETISKAM--PNRSRAQIRLKFNKEEKLHPEKITEYL 572 The following BLAST results are available for this feature:
BLAST of NO24G01460 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO24G01460 ID=NO24G01460|Name=NO24G01460|organism=Nannochloropsis oceanica|type=gene|length=869bpback to top protein sequence of NO24G01460.1 >NO24G01460.1-protein ID=NO24G01460.1-protein|Name=NO24G01460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=239bpback to top Synonyms
Publications
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