NO24G01460, NO24G01460 (gene) Nannochloropsis oceanica

Overview
NameNO24G01460
Unique NameNO24G01460
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length869
Alignment locationchr24:388859..389727 -

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Properties
Property NameValue
DescriptionTranscription factor tfiiib component
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:388859..389727 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0001026obsolete TFIIIB-type transcription factor activity
GO:0140110transcription regulator activity
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006383transcription by RNA polymerase III
GO:0009058biosynthetic process
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0000126transcription factor TFIIIB complex
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR009057Homeodomain-like
IPR030701TFIIIB_B''
IPR001005SANT/Myb
Homology
BLAST of NO24G01460 vs. NCBI_GenBank
Match: EWM24350.1 (transcription factor tfiiib component [Nannochloropsis gaditana])

HSP 1 Score: 203.8 bits (517), Expect = 6.100e-49
Identity = 106/136 (77.94%), Postives = 119/136 (87.50%), Query Frame = 0
Query:  102 GPQVEIVNGQIVINQKSLEVVSRPEEAGEEGWMEEVIEDPQQAATYNSFTTRTKATRWTEAETRSFYQALRQCGTDFTTMASLLFDGKRDRAQLKNKFKKEEKAHGALVYRYLDSTQPL-VVPPGIGEEEEGGRGE 237
            GP+VE+V+GQIVINQKSLEVV+RPE+ G EG MEEV EDPQQAATYNSFT+RT+ATRWT+AETR FYQALRQCGTDFTTMASLLF G+RDRAQLKNKFKKEEK HG LVY+YLDSTQPL V+  G+ +    G GE
Sbjct:  164 GPRVELVDGQIVINQKSLEVVARPEDGG-EGAMEEVTEDPQQAATYNSFTSRTRATRWTDAETRLFYQALRQCGTDFTTMASLLFAGRRDRAQLKNKFKKEEKQHGVLVYKYLDSTQPLPVLEAGVHDGRGEGSGE 298          
BLAST of NO24G01460 vs. NCBI_GenBank
Match: XP_002176806.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC51269.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 84.7 bits (208), Expect = 4.200e-13
Identity = 49/116 (42.24%), Postives = 69/116 (59.48%), Query Frame = 0
Query:  102 GPQVEIVNGQIVINQKSLEVVSRPEEAGEEGWMEEVIEDPQQAATYNSFTTRTKATRWTEAETRSFYQALRQCGTDFTTMASLLFDGKRDRAQLKNKFKKEEKAHGALVYRYLDST 218
            GP V++VNG+IV+ + S+ V +  +E  E   +EE  +     A+YNSFT R K   W   ET+ FY+ALRQ G DF TM +  F+ +R R QLK K++KE   +  L+   LD T
Sbjct:  220 GPVVKVVNGEIVLQESSMVVNASSKEVEEFPVVEEEAQLAVVGASYNSFTNRKKPQHWNVVETQLFYEALRQVGLDFGTMEA-YFENRRTRKQLKRKYQKESSKNPHLIEAALDPT 334          
BLAST of NO24G01460 vs. NCBI_GenBank
Match: GAX14400.1 (transcription factor TFIIIB component B'' [Fistulifera solaris])

HSP 1 Score: 84.3 bits (207), Expect = 5.400e-13
Identity = 54/118 (45.76%), Postives = 73/118 (61.86%), Query Frame = 0
Query:  102 GPQVEIVNGQIVINQKSLEVVSRPEEAGEEGWMEEVIEDPQQ----AATYNSFTTRTKATRWTEAETRSFYQALRQCGTDFTTMASLLFDGKRDRAQLKNKFKKEEKAHGALVYRYLD 216
            GP V+IVNG+IV+ + S+ V++R   A E+     V+E+  Q     AT +SFT R K+ RWT  +TR FYQALRQ GTDF TM +  F  KR R QLK K++ E   +  L+ + LD
Sbjct:  192 GPVVQIVNGEIVLQESSV-VINRANRADEDA---SVVEEEAQLAVVGATAHSFTNRNKSQRWTADQTRLFYQALRQVGTDFGTMEA-FFQEKRTRKQLKRKYQAELIRNPRLIEKALD 304          
BLAST of NO24G01460 vs. NCBI_GenBank
Match: GAX09878.1 (transcription factor TFIIIB component B'' [Fistulifera solaris])

HSP 1 Score: 82.8 bits (203), Expect = 1.600e-12
Identity = 53/118 (44.92%), Postives = 72/118 (61.02%), Query Frame = 0
Query:  102 GPQVEIVNGQIVINQKSLEVVSRPEEAGEEGWMEEVIEDPQQ----AATYNSFTTRTKATRWTEAETRSFYQALRQCGTDFTTMASLLFDGKRDRAQLKNKFKKEEKAHGALVYRYLD 216
            GP V+IVNG+IV+ + S+ V++R     E+     V+E+  Q     AT +SFT R K+ RWT  +TR FYQALRQ GTDF TM +  F  KR R QLK K++ E   +  L+ + LD
Sbjct:  209 GPVVQIVNGEIVLQESSV-VINRANRGDEDA---SVVEEEAQLAVVGATAHSFTNRNKSQRWTADQTRLFYQALRQVGTDFGTMEA-FFQEKRTRKQLKRKYQAELIRNPRLIEKALD 321          
BLAST of NO24G01460 vs. NCBI_GenBank
Match: XP_002115588.1 (hypothetical protein TRIADDRAFT_59457 [Trichoplax adhaerens] >EDV21951.1 hypothetical protein TRIADDRAFT_59457 [Trichoplax adhaerens])

HSP 1 Score: 80.5 bits (197), Expect = 7.900e-12
Identity = 51/119 (42.86%), Postives = 70/119 (58.82%), Query Frame = 0
Query:  103 PQVEI-VNGQIVINQKSLEVVSRPEEAGEEGWMEEVIEDPQQAATYNSFTTRTKATRWTEAETRSFYQALRQCGTDFTTMASLLFDGKRDRAQLKNKFKKEEKAHGALVYRYLDSTQPL 221
            PQV I  NG+I++N+ SL V    E A E   +  VI++     TY S+  ++   RW   ET  FY+AL Q GTDF+ M  L+F  KRDR +LKNKFK+E++ +  LV + L    PL
Sbjct:  361 PQVSIGPNGKIILNEDSLVV----EAASETYELAAVIDESDALPTYRSYKKKSTTDRWNVGETNKFYRALSQVGTDFSLMRRLVFP-KRDRNELKNKFKREDRFNRELVNQALRKRLPL 474          
BLAST of NO24G01460 vs. NCBI_GenBank
Match: XP_019640610.1 (PREDICTED: uncharacterized protein LOC109482360 [Branchiostoma belcheri])

HSP 1 Score: 80.5 bits (197), Expect = 7.900e-12
Identity = 54/118 (45.76%), Postives = 73/118 (61.86%), Query Frame = 0
Query:  103 PQVEIV-NGQIVINQKSLEVVSRPEEAGEEGWMEEVIEDPQQAATYNSFTTRTKATR-WTEAETRSFYQALRQCGTDFTTMASLLFDGKRDRAQLKNKFKKEEKAHGALVYRYLDSTQ 219
            PQV +  +G IV+N++SL  VS P +AG +G   +++ + +   TY+SF  +   T+ W   ET  FY+AL   GTDFT MA++L   KR RAQLK KFKKEEK +  LV R L   Q
Sbjct:  385 PQVRVAEDGTIVLNEQSL-TVSTPAKAGSDG---DIVREDESNTTYSSFRKKVPQTQAWNMKETIKFYKALSTVGTDFTLMAAML--PKRTRAQLKAKFKKEEKQNRNLVDRALSLRQ 496          
BLAST of NO24G01460 vs. NCBI_GenBank
Match: XP_015790027.1 (PREDICTED: transcription factor TFIIIB component B'' homolog [Tetranychus urticae])

HSP 1 Score: 79.0 bits (193), Expect = 2.300e-11
Identity = 45/116 (38.79%), Postives = 72/116 (62.07%), Query Frame = 0
Query:  101 VGPQVEI-VNGQIVINQKSLEVVSRPEEAGEEGWMEEVIEDPQQA-ATYNSFTTRTKATRWTEAETRSFYQALRQCGTDFTTMASLLFDGKRDRAQLKNKFKKEEKAHGALVYRYL 215
            +GP+V++  +G+++I+++SL V+ +P+         E IE+P     TY+SF  R    RWT+ ET  FY AL   G DF+ M++L F+GKR R  LKNKF++E K +  ++ + L
Sbjct:  316 IGPRVKVGPDGELIIDEESL-VIKKPKPV-----ERETIEEPAYGKTTYSSFRKRPPTVRWTKTETIEFYTALNLIGPDFSLMSNLFFNGKRSRTDLKNKFRRENKLNKTVIDKAL 425          
BLAST of NO24G01460 vs. NCBI_GenBank
Match: XP_015790299.1 (PREDICTED: transcription factor TFIIIB component B'' homolog [Tetranychus urticae])

HSP 1 Score: 79.0 bits (193), Expect = 2.300e-11
Identity = 45/116 (38.79%), Postives = 72/116 (62.07%), Query Frame = 0
Query:  101 VGPQVEI-VNGQIVINQKSLEVVSRPEEAGEEGWMEEVIEDPQQA-ATYNSFTTRTKATRWTEAETRSFYQALRQCGTDFTTMASLLFDGKRDRAQLKNKFKKEEKAHGALVYRYL 215
            +GP+V++  +G+++I+++SL V+ +P+         E IE+P     TY+SF  R    RWT+ ET  FY AL   G DF+ M++L F+GKR R  LKNKF++E K +  ++ + L
Sbjct:  316 IGPRVKVGPDGELIIDEESL-VIKKPKPV-----ERETIEEPAYGKTTYSSFRKRPPTVRWTKTETIEFYTALNLIGPDFSLMSNLFFNGKRSRTDLKNKFRRENKLNKTVIDKAL 425          
BLAST of NO24G01460 vs. NCBI_GenBank
Match: CEG81477.1 (hypothetical protein RMATCC62417_15677 [Rhizopus microsporus])

HSP 1 Score: 78.2 bits (191), Expect = 3.900e-11
Identity = 52/116 (44.83%), Postives = 69/116 (59.48%), Query Frame = 0
Query:  103 PQVEIVNGQIVINQKSLEVVSRPEEAGE--EGWMEEVIEDPQQAATYNSFT--TRTKATRWTEAETRSFYQALRQCGTDFTTMASLLFDGKRDRAQLKNKFKKEEKAHGALVYRYL 215
            PQV IVNGQIV++ +SL  V R +  GE  EG M E++E+       NS T   R  ++RW+ AET +FY  L Q GTDF T++  +    R RAQ++ KF KEEK H   +  YL
Sbjct:  474 PQVRIVNGQIVLDTESL-TVERSQAGGEIYEGDM-EIVEESAMTRKVNSHTYGKRQPSSRWSAAETEAFYDLLSQFGTDFETISKAM--PNRSRAQIRLKFNKEEKLHPEKITEYL 585          
BLAST of NO24G01460 vs. NCBI_GenBank
Match: CEG65987.1 (hypothetical protein RMATCC62417_02649 [Rhizopus microsporus])

HSP 1 Score: 78.2 bits (191), Expect = 3.900e-11
Identity = 52/116 (44.83%), Postives = 69/116 (59.48%), Query Frame = 0
Query:  103 PQVEIVNGQIVINQKSLEVVSRPEEAGE--EGWMEEVIEDPQQAATYNSFT--TRTKATRWTEAETRSFYQALRQCGTDFTTMASLLFDGKRDRAQLKNKFKKEEKAHGALVYRYL 215
            PQV IVNGQIV++ +SL  V R +  GE  EG M E++E+       NS T   R  ++RW+ AET +FY  L Q GTDF T++  +    R RAQ++ KF KEEK H   +  YL
Sbjct:  461 PQVRIVNGQIVLDTESL-TVERSQAGGEIYEGDM-EIVEESAMTRKVNSHTYGKRQPSSRWSAAETEAFYDLLSQFGTDFETISKAM--PNRSRAQIRLKFNKEEKLHPEKITEYL 572          
The following BLAST results are available for this feature:
BLAST of NO24G01460 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM24350.16.100e-4977.94transcription factor tfiiib component [Nannochloro... [more]
XP_002176806.14.200e-1342.24predicted protein [Phaeodactylum tricornutum CCAP ... [more]
GAX14400.15.400e-1345.76transcription factor TFIIIB component B'' [Fistuli... [more]
GAX09878.11.600e-1244.92transcription factor TFIIIB component B'' [Fistuli... [more]
XP_002115588.17.900e-1242.86hypothetical protein TRIADDRAFT_59457 [Trichoplax ... [more]
XP_019640610.17.900e-1245.76PREDICTED: uncharacterized protein LOC109482360 [B... [more]
XP_015790027.12.300e-1138.79PREDICTED: transcription factor TFIIIB component B... [more]
XP_015790299.12.300e-1138.79PREDICTED: transcription factor TFIIIB component B... [more]
CEG81477.13.900e-1144.83hypothetical protein RMATCC62417_15677 [Rhizopus m... [more]
CEG65987.13.900e-1144.83hypothetical protein RMATCC62417_02649 [Rhizopus m... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL040nonsL040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002846NSK002846Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G01460.1NO24G01460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598483gene_7370Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101773g1gene6125Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G01460.1NO24G01460.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G01460 ID=NO24G01460|Name=NO24G01460|organism=Nannochloropsis oceanica|type=gene|length=869bp
ATGCGAAAATTGAGCTTGGGCGCATCAGCAGCATCTGCAGCGGCGGCGGC
TGCGAAAAAGAAGAGAAAGGAGGACGAGGAAAAGGAAGAGGCAGCCAGAC
TGAAAAAGAAAGAGAAGGAAAAGGAAAAGAAGGCGGGAGAGGAGAAAGAG
GGAAAAGAAGGAGAAGAAGAAAAGGAGGAGGGGAAGGAGGAAGAGGACGA
TGCTGCCGCCGCCGCCGCCGCCGCCGCAGCAGCAGTAGTGgtaagaggaa
gagggaggagaagaggtagcactacagctgcgaggatatcagaccgtgga
ggggacaagaagatgaagaaacgcaagagacggaagaagaaaaagatagg
gaggagaacaacaaccccctccctccttctcttcccatcgagGAGGGCGC
TGCCACTGTCGTAACCGCCGCTGTCACCGCCACCGCGACAGCACCAGTGG
TGGTGGGACCTCAGGTAGAGATTGTGAACGGCCAGATCGTCATTAATCAG
AAATCCCTTGAAGTCGTGTCGAGGCCCGAGGAGGCAGGGGAGGAGGGATG
GATGGAGGAAGTGATCGAAGATCCCCAGCAGGCGGCTACCTACAACTCCT
TCACGACCCGGACGAAAGCGACGCGATGGACAGAGGCCGAAACCCGGTCA
TTTTATCAAGCGCTCCGGCAGTGCGGGACGGACTTCACCACCATGGCTTC
CTTGTTGTTTGATGGGAAACGGGATAGGGCCCAACTGAAGAATAAATTCA
AGAAGGAAGAGAAGGCGCACGGGGCGTTAGTCTACCGTTACCTTGATAGC
ACCCAGCCATTGGTGGTGCCTCCTGGGATAGGGGAGGAGGAAGAGGGTGG
ACGGGGGGAAAGAGAATAG
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protein sequence of NO24G01460.1

>NO24G01460.1-protein ID=NO24G01460.1-protein|Name=NO24G01460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=239bp
MRKLSLGASAASAAAAAAKKKRKEDEEKEEAARLKKKEKEKEKKAGEEKE
GKEGEEEKEEGKEEEDDAAAAAAAAAAAVVEGAATVVTAAVTATATAPVV
VGPQVEIVNGQIVINQKSLEVVSRPEEAGEEGWMEEVIEDPQQAATYNSF
TTRTKATRWTEAETRSFYQALRQCGTDFTTMASLLFDGKRDRAQLKNKFK
KEEKAHGALVYRYLDSTQPLVVPPGIGEEEEGGRGERE*
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Synonyms
Publications