NO24G01420, NO24G01420 (gene) Nannochloropsis oceanica

Overview
NameNO24G01420
Unique NameNO24G01420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1595
Alignment locationchr24:381055..382649 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:381055..382649 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO24G01420 vs. NCBI_GenBank
Match: XP_005855589.1 (hypothetical protein NGA_0624300 [Nannochloropsis gaditana CCMP526] >EKU20781.1 hypothetical protein NGA_0624300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 519.6 bits (1337), Expect = 6.800e-144
Identity = 270/317 (85.17%), Postives = 295/317 (93.06%), Query Frame = 0 
Query:    4 LSLLLLASATFSSAFVFPASRVGSRIVAEPLTKLHVVVSETTREGVPMPQPSIKPASDKLFVYLWIDHLGNRVYRATRNIGASPRAIQLWNPLATDEEQSYPETGVSTAPSFTKYEMLGEENLDAWVENGFGEMDDVEASPLAYTIEGGDDASXXXXXXXXXXXXXXXXXXXXMTSEEIEESISAYNEYYPPADFKSMVTAMEKSWRTIILSRGKQGAKSMREFYRDLHKAHPELEQKVWIMETHATRSPVPGDPDTYNHWMSDEDILKMARVATEGHDDVVEFSGLEFGDSMDGIKGEDWVTIPPPLSWFKDEAKK 321
            LSL +LA AT  SAF+FPASR G+R+VAEPLTKL+VVVSETTREGVPMP+P++KPA+DKLFVYLWIDHLGNRVYRATRNIGASPR IQLWNPLA+D +Q+YPETGVSTAPSFTKYE+LG++NLDAWVE+GFGE DDVE SP+AYTIEG ++    XXXXXXXXXXXXXXXXXX  SEEIE SI+AYNEYYPPA F ++VTAM+ SWRTIILSRGKQGAK+MREFYRDLHKAHPELEQKVWIMETHATRSPVP DPDTYNHWMSDEDILKMARVAT+GHDDVVEFSGLEF DSMDGIKGEDWVTIPPPLSWFKDEAKK
Sbjct:   12 LSLSMLALATVGSAFIFPASRPGTRLVAEPLTKLNVVVSETTREGVPMPEPNVKPATDKLFVYLWIDHLGNRVYRATRNIGASPRRIQLWNPLASDADQAYPETGVSTAPSFTKYEVLGDDNLDAWVESGFGEFDDVEPSPVAYTIEGAEE----XXXXXXXXXXXXXXXXXXXXSEEIEASINAYNEYYPPASFDALVTAMQASWRTIILSRGKQGAKAMREFYRDLHKAHPELEQKVWIMETHATRSPVPEDPDTYNHWMSDEDILKMARVATDGHDDVVEFSGLEFEDSMDGIKGEDWVTIPPPLSWFKDEAKK 324
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BLAST of NO24G01420 vs. NCBI_GenBank
Match: EWM24340.1 (hypothetical protein Naga_100105g16 [Nannochloropsis gaditana])

HSP 1 Score: 516.9 bits (1330), Expect = 4.400e-143
Identity = 269/317 (84.86%), Postives = 294/317 (92.74%), Query Frame = 0 
Query:    4 LSLLLLASATFSSAFVFPASRVGSRIVAEPLTKLHVVVSETTREGVPMPQPSIKPASDKLFVYLWIDHLGNRVYRATRNIGASPRAIQLWNPLATDEEQSYPETGVSTAPSFTKYEMLGEENLDAWVENGFGEMDDVEASPLAYTIEGGDDASXXXXXXXXXXXXXXXXXXXXMTSEEIEESISAYNEYYPPADFKSMVTAMEKSWRTIILSRGKQGAKSMREFYRDLHKAHPELEQKVWIMETHATRSPVPGDPDTYNHWMSDEDILKMARVATEGHDDVVEFSGLEFGDSMDGIKGEDWVTIPPPLSWFKDEAKK 321
            LSL +LA AT  SAF+FPASR G+R+VAEPLTKL+VVVSETTREGVPMP+P++KPA+DKLFVYLWIDHLGNRVYRATRNIGASPR IQLWNPLA+D +Q+YPETG STAPSFTKYE+LG++NLDAWVE+GFGE DDVE SP+AYTIEG ++    XXXXXXXXXXXXXXXXXX  SEEIE SI+AYNEYYPPA F ++VTAM+ SWRTIILSRGKQGAK+MREFYRDLHKAHPELEQKVWIMETHATRSPVP DPDTYNHWMSDEDILKMARVAT+GHDDVVEFSGLEF DSMDGIKGEDWVTIPPPLSWFKDEAKK
Sbjct:   12 LSLSMLALATVGSAFIFPASRPGTRLVAEPLTKLNVVVSETTREGVPMPEPNVKPATDKLFVYLWIDHLGNRVYRATRNIGASPRRIQLWNPLASDADQAYPETGDSTAPSFTKYEVLGDDNLDAWVESGFGEFDDVEPSPVAYTIEGAEE----XXXXXXXXXXXXXXXXXXXXSEEIEASINAYNEYYPPASFDALVTAMQASWRTIILSRGKQGAKAMREFYRDLHKAHPELEQKVWIMETHATRSPVPEDPDTYNHWMSDEDILKMARVATDGHDDVVEFSGLEFEDSMDGIKGEDWVTIPPPLSWFKDEAKK 324
The following BLAST results are available for this feature:
BLAST of NO24G01420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005855589.16.800e-14485.17hypothetical protein NGA_0624300 [Nannochloropsis ... [more]
EWM24340.14.400e-14384.86hypothetical protein Naga_100105g16 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL040nonsL040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002852NSK002852Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G01420.1NO24G01420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598474gene_7366Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100105g16gene6129Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G01420.1NO24G01420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G01420 ID=NO24G01420|Name=NO24G01420|organism=Nannochloropsis oceanica|type=gene|length=1595bp
ATGCTGCGCCTGTCTCTCCTTTTGCTGGCCTCGGCCACGTTCAGCAGTGC
CTTTGTCTTCCCTGCTAGCCGGGTGGGTAGCAGAATCGTCGCAGgtacgt
gcgttatttgatatggcgtgcttttggggatgtatgttttggttatggca
tggtaatactgtgtaaatgagtgactggatgctggaaaattatccctaat
accttctccctggcgttgctcgcccatctccacatctcaatccctccctc
cctccctccctccctccaaatcaacacagAGCCACTAACCAAGCTGCATG
TCGTCGTCTCCGAAACCACCCGTGAAGGGGTCCCGATGCCCCAACCCAGC
ATCAAGCCCGCCTCTGACAAACTCTTCGTGTACCTGTGGATCGACCACCT
GGGCAACCGTGTCTACCGTGCAACCCGCAATATCGGGGCCTCTCCCCGAG
CCATCCAGCTCTGGAACCCCCTCGCCACCGATGAAGAGCAGgtaagcaaa
atatatctctcaccttccccccgtggcggtgtccctcttaaaattctttt
cgtgtagtaattgtgcctttcgctcaccctccctcccccctctttccctt
cctccccttctcaacagAGCTACCCCGAGACTGGCGTCTCCACCGCTCCT
TCTTTCACCAAGTACGAGATGCTGGGCGAGGAAAACCTGGATGCGTGGGT
AGAGAATGGGTTTGGTGAAATGGATGATGTGGAGGCTTCTCCCCTAGCTT
ATACCATTGAGGGCGGGGACGACGCGTCAGCTACCGCAAACGCGGCCGCG
GCTGCTACAGCTGGGGGGGAAGGAAATGAGGAAGCGGAGATGACGAGTGA
GGAGATCGAGGAATCCATCAGTGCGTACAACGAATACTACCCGCCCGCGG
ACTTCAAGAGCATGGTGACGGCGATGGAGAAGAGCTGGCGGACCATCATT
TTGTCGCGAGGAAAACAAGGAGCCAAGTCCATGCGAGAATTTTACAGgta
agagaggcaggggatgagggagtgagggagaaatgagaggaaagggtatg
gccaatatcaatttcttgtctatgtacaccgcaaggctgtatttggtgga
atgttcatcatcccctcccttcctcccttcctccctacccccttcccctc
cttctagGGATCTGCACAAGGCTCACCCTGAGCTGGAGCAAAAAGTCTGG
ATCATGGAGACGCACGCCACTCGCTCCCCCGTTCCCGGCGATCCGGACAC
GTACAACCACTGGATGAGCGACGAGGACATCCTGAAGATGGCCCGCGTGg
tacgtagcccgccctccttcgcgtcctcgtttcctccctcttctccgttc
atacctcgttttgcctgatatagatgctggcctcctacattgatgacagg
ccccttcactcatattttcgttctctccctccttccctccttccctccgt
ccctccgcagGCGACTGAAGGGCACGATGACGTGGTTGAATTTTCGGGTT
TGGAATTTGGAGACTCTATGGATGGGATTAAGGGGGAGGATTGGGTTACC
ATTCCGCCGCCTTTATCCTGGTTTAAGGATGAGGCCAAGAAGTAA
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protein sequence of NO24G01420.1

>NO24G01420.1-protein ID=NO24G01420.1-protein|Name=NO24G01420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=321bp
MLRLSLLLLASATFSSAFVFPASRVGSRIVAEPLTKLHVVVSETTREGVP
MPQPSIKPASDKLFVYLWIDHLGNRVYRATRNIGASPRAIQLWNPLATDE
EQSYPETGVSTAPSFTKYEMLGEENLDAWVENGFGEMDDVEASPLAYTIE
GGDDASATANAAAAATAGGEGNEEAEMTSEEIEESISAYNEYYPPADFKS
MVTAMEKSWRTIILSRGKQGAKSMREFYRDLHKAHPELEQKVWIMETHAT
RSPVPGDPDTYNHWMSDEDILKMARVATEGHDDVVEFSGLEFGDSMDGIK
GEDWVTIPPPLSWFKDEAKK*
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Synonyms
Publications