NO24G01340, NO24G01340 (gene) Nannochloropsis oceanica

Overview
NameNO24G01340
Unique NameNO24G01340
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2743
Alignment locationchr24:364507..367249 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:364507..367249 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO24G01340 vs. NCBI_GenBank
Match: EWM24345.1 (hypothetical protein Naga_100105g11 [Nannochloropsis gaditana])

HSP 1 Score: 122.1 bits (305), Expect = 1.600e-24
Identity = 56/67 (83.58%), Postives = 63/67 (94.03%), Query Frame = 0 
Query:    1 MSISTNPVGKVWVENMFLWLGPLLLFVYKMLYEYLPFPAFAVCLIIPAIYLYRITKDLSPVEAADEL 68
            MSISTNPVGKVWVENMFLWL PLLLF+YKMLYEYLP PAF  CL+IPA+Y+YR+TK+LSPVEAADE+
Sbjct:    1 MSISTNPVGKVWVENMFLWLAPLLLFIYKMLYEYLPAPAFIACLVIPALYVYRVTKELSPVEAADEM 67
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BLAST of NO24G01340 vs. NCBI_GenBank
Match: XP_005855584.1 (hypothetical protein NGA_0623800 [Nannochloropsis gaditana CCMP526] >EKU20776.1 hypothetical protein NGA_0623800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 121.7 bits (304), Expect = 2.100e-24
Identity = 56/68 (82.35%), Postives = 64/68 (94.12%), Query Frame = 0 
Query:    1 MSISTNPVGKVWVENMFLWLGPLLLFVYKMLYEYLPFPAFAVCLIIPAIYLYRITKDLSPVEAADELN 69
            MSISTNPVGKVWVENMFLWL PLLLF+YKMLYEYLP PAF  CL+IPA+Y+YR+TK+LSPVEAADE++
Sbjct:    1 MSISTNPVGKVWVENMFLWLAPLLLFIYKMLYEYLPPPAFIACLVIPALYVYRVTKELSPVEAADEMS 68
The following BLAST results are available for this feature:
BLAST of NO24G01340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM24345.11.600e-2483.58hypothetical protein Naga_100105g11 [Nannochlorops... [more]
XP_005855584.12.100e-2482.35hypothetical protein NGA_0623800 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL040nonsL040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G01340.1NO24G01340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672681gene_7358Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G01340.1NO24G01340.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G01340 ID=NO24G01340|Name=NO24G01340|organism=Nannochloropsis oceanica|type=gene|length=2743bp
AGGGGGAGGAGTAACCAAGAAGTCCCCTGAGACCCTCTGCGCGCTGGCGG
TGTGGAGAGCGGGTGGAGGAGGAGGAGGAGGAAGGGGAGGAAAGGATGGT
GGCAGCGGTATTACTGTGAGTGCGAGGAGAGCGGGCAGTATTGGGTGGGG
TGCCTCCAGCGGGTACAAAGGAGGAGGAGGGGTGTGTAATACTGTTGAAA
GTGGGGAGGAAGGAGACAGGGGAGGAAGGCATTTGGTCGGTCAGATTCCC
CGCACCAGCGGGAGCGCTAGAAGTGGCAGCCTTGAGGGTAATGGTTGGAC
TGCTATTACTGCTGCTACGGCTGCAGCAGCTAGTGCTGCTTTTCTTCCGA
CCGGGTGACAAGGAGCTGAGCAGAGAGAAGTCGATCTTGCCGCGTTTTTC
CTTAGGAGAGGGGGGGGAAGGAGGGGAGGCAATGCTGGTCAAGGCAGGAG
GGAGCTTGCGGGGGCTATTGATGCTGCGGGGACTGATGCTACTGTTGATA
TTGTGGTTGCTATGGCTGTTGCCTCCGTCGTAGAGGACTTCACGGACGTC
GGCCGTTAAGTCCAAGCTTTCATTGCCTCTGGGGGTGGTACCGGAGGTAG
GGGCGAGAGAGAAGGATGGTTTCCTCTGCTTCTTGGCGCTGTCCCCGCCG
ATGCTGTCAGTGCGGGGCGAGGCGAAATATGTGATCTTTTTCATTTCCTT
TTTCTCTATTCAGCCTGTTGTGCGAGGGTTTGTGGTGGGAAAGAAAGGTT
TGTTAGTGGGGCTCGTGTGGTGGTGGTATTCGTGGTCAGGCAAAGGAGCC
TCTTTCGATTGAAAACGCAGTCGCATCATGGTGTCGCATACTGGCAAGCA
GAAATATACTCATTTTGTTCTAACTTTGTTGGTTTACCAACGAGTGCTGG
GTAGGGCCACCTAGACAGTTAGTCTGCGGCGACGTTGGTGCATCAAGTCA
ACGGACGCCAGAGCGACGTCGTTGATTTGAGAGGGGGTGCGTTGGGCTAG
TCCATTGACGTCTTAGCTAGCTACTGCAGACATGCACAGGGGACCACAAG
ATGGGAGAAAGACAAGCCCATCGCTGGCGGTTAGGGTGGTTGCGTAGAAG
GGAAGATGGGCCGTCGTTGGAGGCGAAGAGCACTTGTTACAAGGCCACTC
GCGCGCATAGCTTGTCCACGCAGAGCAGCTGGTGCATTTCTATGGTGGCG
TATGAGGGATGAGGTGCACATGCTCGAGGTGTGGTGCAAGAAATATGTTT
TTGTGTCGTCGTGTTGGAGGCTGAGCTCAACGGTCGAAGCAAACCTGTGG
TGTTGGTTTTCGGTGATGACGAGTGTGAAGCCAGATAATTACAAAGCCTT
GATGGAATCATAGAAAATCCCTCTTCTGGACCAGTCACCGGTCGTATTCA
CGATGCAGAAGTCCCACGCCCCTTCCATCTATCAGGATTTTTTAGTGCCT
GACATGGCACGCTGTCCTTCCTCCCTTCTTTGCCTCGCTTTCCACTTCAC
TCTCATCATTCGCTCAGCATTCTTCCCGCCCATTCCCGCGAAGGCAACCA
CTCTATACCGAGGTAACCATGAGCATCAGCACCAATCCCGTCGGGAAGGT
ATGGGTGGAAAACATGTTCCTGTGGCTGGGTCCCCTCCTCCTGTTCGTCT
ACAAGgtacgctttggcccagaacctgtccgatagagcctcccctccctc
cttgccgtgtcccttcctgtctgctcctcgtaccacccccaccacacctg
cttacgccccatcctttgcaaacgaaaaatacgtcctttatgttgtcatt
taactgcgttgctactccattccctcaatccggccgcccgatctcaccct
ccctcctctctcccttttccccctccctccttcgtccacagATGCTGTAC
GAGTACCTTCCCTTCCCGGCCTTTGCCGTCTGCTTGATCATCCCTGCCAT
TTACTTGTACCGCATTACAAAGGATTTGTCTCCCGTAGAAGCTGCGGATG
AGTTGAACAAGAAGCTTCGGCAAGCAGACCAAATGCTTGAGGAGCTCACA
AAGGAGGAAGAGGCGGAGGAGAGGGAGAGGAGGAAGgtaagaaagaggaa
tggagaaaacagataatcgaaggaagacgtgagttgggttgtcaatttcc
tggatttgcgtctcgcgttctgacatgtaatttctctcctctagGCCGAG
AGCAAGCAACAGAAGAAGAAGCAACAGAGCGTTTCGCAGCCAGTACAGGT
CGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACTGCCACTGGAG
GGAAAAAGAATAAAAAGCAGGCGGCAGCGGCGGCACGGGCGGCGGCGGCA
GAAGAGGAGGATGACATGTTGTCGCGCATGGCGCAACAAAGGTCGAAGAA
GGCCACGAGATAGAGAAGGAAAGAATGTGACCCAATGAATAGTAGGGAAG
GAACAAATAAACAAAAAAGAGTGGAGGAAATAGGAGCTAAGGCAATAGAA
AAAGTAAAATTGCTTCCGCAGAGACAAAAAAGCAAGAGAAATAGGAAACA
GTCATACAAGAGGCAAACACCAAAACCTCCTCCCTCTCTCCCTCCTCCCC
CTCCCCCCTTTTCCCTCCTGAGAGTCGTCGTGAAGGTGGAACGCGGTCCC
TCCCTGAAAGCCAACATTAGAGCCGAAGAAAAAAACTTAGAAAGATTTGG
AAAATATCGGCAACACTGACCGCAGTGGCAACTCAGAGGGGGG
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protein sequence of NO24G01340.1

>NO24G01340.1-protein ID=NO24G01340.1-protein|Name=NO24G01340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=167bp
MSISTNPVGKVWVENMFLWLGPLLLFVYKMLYEYLPFPAFAVCLIIPAIY
LYRITKDLSPVEAADELNKKLRQADQMLEELTKEEEAEERERRKAESKQQ
KKKQQSVSQPVQVAAAAAAAAAAAATATGGKKNKKQAAAAARAAAAEEED
DMLSRMAQQRSKKATR*
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Synonyms
Publications