NO24G01320, NO24G01320 (gene) Nannochloropsis oceanica

Overview
NameNO24G01320
Unique NameNO24G01320
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2910
Alignment locationchr24:359492..362401 -

Link to JBrowse

Properties
Property NameValue
DescriptionSurfeit locus protein 6 homolog
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:359492..362401 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007019SURF6
IPR029190Rrp14/SURF6_C
IPR029188Rrp14_N
Homology
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BLAST of NO24G01320 vs. NCBI_GenBank
Match: XP_005855585.1 (hypothetical protein NGA_0623900 [Nannochloropsis gaditana CCMP526] >EKU20777.1 hypothetical protein NGA_0623900 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 211.1 bits (536), Expect = 7.300e-51
Identity = 201/284 (70.77%), Postives = 213/284 (75.00%), Query Frame = 0 
Query:  129 GPLSLVGTTPRAKSIEELRERLRIKIEVARAKRGGVSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEMDLQFSKITVPTSFASGALPKKGGKNLVGLLKKAEEXXXXXXXXXXXXXXXXXXEERNAILWKDALKSAHGGKVLDNPKLLXXXXXXXXXXXXXXXXXWGDRTAKLSAAEREKQGKREANLKKRKLGGVEGCAAGQNMDKDKGKDEKSGGGRRRAGFEGKRADFLNKGGKKGRD 413
            GPLSLVGTTPRAKSIEELRERLR+KIE ARAKRGGVSE                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      +D+QF KI VPT  AS  L KKGGKNLVGLLKKAEE                  EE +A+LWKDALKSAHG K+LDNPKLL    XXXXXXXXXXXXXWGDRTAK+ AAEREKQG+REANLKKRKLGGVEGC AG   +KD    EKSGG + RAGFEGKRA+FLNKG  K R+
Sbjct:  206 GPLSLVGTTPRAKSIEELRERLRLKIEEARAKRGGVSE-----------GGNRRSAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHQNDASVDIQFGKIAVPTPVASRNL-KKGGKNLVGLLKKAEE---KEKRLKELQATEGGKEEASALLWKDALKSAHGEKILDNPKLLKKAIXXXXXXXXXXXXXWGDRTAKIEAAEREKQGRREANLKKRKLGGVEGCLAGSKAEKD--NKEKSGGRQGRAGFEGKRAEFLNKGAGKKRN 472
The following BLAST results are available for this feature:
BLAST of NO24G01320 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855585.17.300e-5170.77hypothetical protein NGA_0623900 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL040nonsL040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G01320.2NO24G01320.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO24G01320.1NO24G01320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|652284gene_7355Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G01320.2NO24G01320.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO24G01320.1NO24G01320.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G01320 ID=NO24G01320|Name=NO24G01320|organism=Nannochloropsis oceanica|type=gene|length=2910bp
CTGTGTCCTCACCCTTCCTGTGCTAAGATGGTACGTTGTGAAAAGAAGGG
TGATATTGTCTCATTTTAGGTTTAAATAAATGCCAGCGTCTTGCACTCAA
GCTCAAAAGGGTTGTCAGAGTAGGGATGGTTGCAACGCGCAAAGGGTCTG
GTGTCACGAAAGGGCCGCTCCCAAAAGTTGGGTTGCTGCGTGGGTTGGAG
TTGGAGTTGGAGCTGAAGAAAACGCCGGACAGCGGCCTCATGCACCGTCA
CACCCTCCATTGATAGACGAAAGGCCTGTCTTCGTTCGGGTTGAGTGGGT
TGAGATCGTTCGGGTCGGACCAGAAGTTAAAGCGACAACGGGAATGAGGG
CAAGACAGCGATTCGGCCAGCCAGCGTTGGGCCCGCTAAACAGCGTGAAC
GGCTTGCCGCGGACCATGCTTGCCCTCCATTTCATATGGGCGTCTCTTTT
TTGTCTCTCCACACTTTCACCCACGATCTGCCACAAATACGAGAATGACA
AACTAATCATTGGCTGCACAGGCGTGTGCAGCGGTTTGGCCAGACTTCGT
GTCCGTAGAAACACATCACAAAAGTGTATCTACCGTTCAGCCTCCCCACC
CTCCTTCTAACCCACGACGCACCATCTATCCTACCTAACGCTTCCCACCA
ATAGCACATACACACGGCTACCTTTTTCCATTCCGTAGAGCGCAATTTGG
GGAAGCATGGCGGTGCAAGACGAGGCCGTGCTAAGACGACGGCTGGCGGA
GAAGGATGCTTTCTTTTGCCGCATGGTCAATTTGGTGCCGGCCGACCTGT
ATTTGCCCAAGGACGATAACAGTGCAGCGGATGCGAATGCCAAATATTTT
AAGgttcgtactatgtgtatttaaaaagatatatgaatagagtaatcgaa
gaggttgatttggagaatttagcggggagggtgggatgaagacttaggta
gacagcaggatagcggagagggtggcggcggcggataagaagcgcagcta
cgctcgcgctctttgtttcatgaggacaatacctatgcactttgaaataa
gtagtcgcttacacacgctgtagacgtggaggcgacatcctctcacgctc
attttgcgtcgcatcgctcatcctccctccctctgaaatacagAACAAAC
GTCTAGCCGCGCCCAAGCAAGTCAAGAAGGAAGAGTCCAAGCGCGGTAAG
AAAATTAAATTTGACCCGGCCAATATGAAGACTGTCACAGAGCTTCAGAA
AGAGAGAGCGGAGAAGGAGAAGGGCGAGAAGGAGGAGAGGAAGAGGAAGC
GGGAGGAAGAGGAGGAGGAGGAGGAAGGAGGAGAGGAGGAGGAGGAGGAG
GATAGTGAAAATGACGAAGACATGGAGGAGAGCGATGATGATGATAAGGG
AGAGGAGGATGGGATGGAGGTCGAAGACGATGCGGGGGAGGAGGAGGAGG
AGGCGGCGGCGGAGGCGGAGGAGGAAGCGGAGGAGGAGGGAGGGGCAGCA
AGTGCTGCGACAGGGCCAGCAGGAGATGCGGAAGACGTTTCAGAAGGAGG
AAGAAAAGGGAGAGGAAAAAATGGAGGGCAGCAGCAGAAGAAGCAGCAGC
CTCCACTAGGACCTCTGTCGCTGGTGGGAACGACGCCGCGGGCGAAGTCA
ATCGAAGAGTTGAGGGAGCGACTACGGgtaggtgtggagggaagaaggag
agaggatcgaaccatacgtcgagctataagctatagccacatgagattgc
gctaacatgcatacctttttcccctctttcataccatccttcttcgtgac
caacacagATTAAAATTGAGGTGGCACGAGCTAAGCGTGGAGGAGTCAGT
GAAGGCGGCAACCGCCGCAGTGCCAAGGATAGCAAAGCTGCCGCCGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGCCAACGCACAAAACAGGCGGAAGA
AGATGCAACATGTCCCCTCTTCCTCCTTCTCTCCTTCTACTTCTTTCCCT
CCTTCTTCCCCTGCCGCTGCGGCAGCCGTTGCGGCTGCCACTGCTACTGC
TGCTGCTCCCAAGCAGGAGATGGACCTTCAGTTTAGTAAGATTACCGTCC
CAACTTCTTTTGCTTCGGGGGCGCTGCCGAAGAAGGGAGGGAAGAATTTG
GTAGGTCTTCTGAAGAAGGCAGAGGAGAAGGAGAGGAGGTTGAAGGAGCT
CCAGGCCGGGGAAGGAGGGGAAGGAGGAAAGGAGGAACGGAACGCGATTT
TGTGGAAGGATGCCTTGAAGAGTGCGCATGGTGGGAAGGTTCTGGATAAC
CCCAAGTTACTCAAAAAGGCGATCAAGTCGAAGGAGAAGGCCAAGGCGAA
GAGCAAAGAAAAGTGGGGCGATCGTACTGCCAAGCTCTCGGCGGCAGAGA
GGGAGAAGCAAGGAAAACGGGAGGCGAACTTGAAGAAGAGGAAGTTGGGG
GGAGTGGAAGGATGTGCGGCGGGTCAGAATATGGATAAAGATAAGGGGAA
GGATGAGAAGTCAGGAGGGGGGAGGCGCCGCGCCGGCTTTGAAGGGAAGA
GGGCGGATTTTTTGAACAAGGGAGGTAAGAAGGGAAGGGATGGAGAGGAG
GGGGGGAGAAGGGTGCAGGAAGCGGAGGGGGAGGCAAAGGCGGAGGGGGA
GGAAGTGGTCAGGTCACGGGAAAAGCGGGGGGATGGGAGGTGGAGGGGGA
GGGGTAGGAGGAGGACATAGTTAGATGGCACTGGGGATGGGTGCGGAGGA
TGGTTGGGCGTAAGAGAGAGAGAAAAAGCGAAAAGTAGAAGTCTTTCGAA
CGTGCGTGTTTAAAGGTTGGGAGTATTTCTTTGTTGCGAGGTTGATGGTG
ATGATTTGGGAGCCAGGAGCAGAGAAAGACAAAAAGAAACAAAACGAAAC
GAGTGAAATT
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protein sequence of NO24G01320.2

>NO24G01320.2-protein ID=NO24G01320.2-protein|Name=NO24G01320.2|organism=Nannochloropsis oceanica|type=polypeptide|length=455bp
MKTVTELQKERAEKEKGEKEERKRKREEEEEEEEGGEEEEEEDSENDEDM
EESDDDDKGEEDGMEVEDDAGEEEEEAAAEAEEEAEEEGGAASAATGPAG
DAEDVSEGGRKGRGKNGGQQQKKQQPPLGPLSLVGTTPRAKSIEELRERL
RIKIEVARAKRGGVSEGGNRRSAKDSKAAAAAAAAAAAAAANAQNRRKKM
QHVPSSSFSPSTSFPPSSPAAAAAVAAATATAAAPKQEMDLQFSKITVPT
SFASGALPKKGGKNLVGLLKKAEEKERRLKELQAGEGGEGGKEERNAILW
KDALKSAHGGKVLDNPKLLKKAIKSKEKAKAKSKEKWGDRTAKLSAAERE
KQGKREANLKKRKLGGVEGCAAGQNMDKDKGKDEKSGGGRRRAGFEGKRA
DFLNKGGKKGRDGEEGGRRVQEAEGEAKAEGEEVVRSREKRGDGRWRGRG
RRRT*
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protein sequence of NO24G01320.1

>NO24G01320.1-protein ID=NO24G01320.1-protein|Name=NO24G01320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=531bp
MAVQDEAVLRRRLAEKDAFFCRMVNLVPADLYLPKDDNSAADANAKYFKN
KRLAAPKQVKKEESKRGKKIKFDPANMKTVTELQKERAEKEKGEKEERKR
KREEEEEEEEGGEEEEEEDSENDEDMEESDDDDKGEEDGMEVEDDAGEEE
EEAAAEAEEEAEEEGGAASAATGPAGDAEDVSEGGRKGRGKNGGQQQKKQ
QPPLGPLSLVGTTPRAKSIEELRERLRIKIEVARAKRGGVSEGGNRRSAK
DSKAAAAAAAAAAAAAANAQNRRKKMQHVPSSSFSPSTSFPPSSPAAAAA
VAAATATAAAPKQEMDLQFSKITVPTSFASGALPKKGGKNLVGLLKKAEE
KERRLKELQAGEGGEGGKEERNAILWKDALKSAHGGKVLDNPKLLKKAIK
SKEKAKAKSKEKWGDRTAKLSAAEREKQGKREANLKKRKLGGVEGCAAGQ
NMDKDKGKDEKSGGGRRRAGFEGKRADFLNKGGKKGRDGEEGGRRVQEAE
GEAKAEGEEVVRSREKRGDGRWRGRGRRRT*
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Synonyms
Publications