NO24G01280, NO24G01280 (gene) Nannochloropsis oceanica

Overview
NameNO24G01280
Unique NameNO24G01280
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length852
Alignment locationchr24:349331..350182 -

Link to JBrowse

Properties
Property NameValue
DescriptionCtr copper transporter
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:349331..350182 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005375copper ion transmembrane transporter activity
GO:0005375copper ion transmembrane transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0035434copper ion transmembrane transport
GO:0035434copper ion transmembrane transport
Vocabulary: INTERPRO
TermDefinition
IPR007274Cop_transporter
Homology
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BLAST of NO24G01280 vs. NCBI_GenBank
Match: EWM24349.1 (Ctr copper transporter [Nannochloropsis gaditana])

HSP 1 Score: 176.4 bits (446), Expect = 1.100e-40
Identity = 103/203 (50.74%), Postives = 123/203 (60.59%), Query Frame = 0 
Query:   47 MDDGG---GMDMMGSMSMTFASFSTYKMQVVWGWWDVKTKGQYVATLLALAAAVVVHRWLVKLEVAYVKKTLVQATEDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXESLXXXXXXXXAGRTRLHGAVVKSVPFSKRLMHAAFSGLLYLYALLLMLAAMTYNPGLFLALGVGYIVGELCFSTTFDLVGVGGMVMRGKGGACCE 247
            MDDGG   GMDMMGSMSMTFA FSTY+++V+WGWWDV+T+GQY+ATLLA+  AVV+ RWLVKLE AYVK+ L   T  G                            ESL        A       + +  VPF KR++ AA S  LY+YALLLMLAAMTYNPG+FLALG+GY VGEL F T F+   + G   R +   CCE
Sbjct:    1 MDDGGSDRGMDMMGSMSMTFAPFSTYQLKVIWGWWDVQTEGQYIATLLAMFVAVVLFRWLVKLETAYVKRALAVTTLAG-NIDCSSRGEREGKSYRNDTLGVNTELEESLLSREGHEDAAGLGPRVSSLSKVPFQKRVVQAALSAFLYMYALLLMLAAMTYNPGIFLALGIGYAVGELFFGTAFETELISG--RRERKERCCE 200
The following BLAST results are available for this feature:
BLAST of NO24G01280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24349.11.100e-4050.74Ctr copper transporter [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL040nonsL040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002862NSK002862Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G01280.1NO24G01280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|641075gene_7353Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100105g5gene6139Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G01280.1NO24G01280.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G01280 ID=NO24G01280|Name=NO24G01280|organism=Nannochloropsis oceanica|type=gene|length=852bp
CGCCTGCCTTTTCTTGCTCTTCTCAGCTGGCGCAAAAGTTTGCAACATCT
CACCCTTTGGGTTCCAGCCTCTTCATGCACAAGCTCGTGTTAGAGCCATG
CGATTAGCTTTTAATTTTGCCAGTCCCATTCTTGGGCTTGCTTGGCACAC
GCCCTGTTTCACTTTCGCATGCGCCATCTGCCAAACTCATCGGTACCACA
CCACAGCAGTCTACTTGCGCACGCCACCAAGCAAGATGGACGATGGTGGC
GGTATGGATATGATGGGTTCTATGAGCATGACCTTTGCCTCATTCTCAAC
CTACAAGATGCAAGTGGTGTGGGGCTGGTGGGACGTCAAAACGAAGGGGC
AGTACGTTGCTACCCTCCTTGCCTTGGCCGCAGCCGTGGTGGTGCACCGG
TGGCTCGTCAAGCTCGAAGTCGCTTACGTGAAGAAGACCCTGGTTCAGGC
GACGGAGGATGGTGGCGCTGGTCGTGGAGGCGGCGGTGGTGGGTTTGTAG
GAGGACTGGGCATCAACACTACCACCACTGCTAATATGGAGCTCGGGGAG
TCTCTCTTGATGGGCGGAGGTGGAACGGGCGCCGGTCGGACCCGTCTTCA
TGGGGCGGTGGTCAAGAGCGTGCCTTTCAGTAAGCGGTTGATGCATGCCG
CGTTTTCCGGGTTGTTATACCTGTATGCCTTGCTTTTGATGTTGGCAGCC
ATGACTTACAATCCTGGGCTCTTTTTGGCTCTAGGGGTGGGATACATTGT
AGGGGAGCTTTGTTTTTCGACTACATTTGATTTGGTTGGAGTTGGGGGTA
TGGTGATGCGGGGGAAGGGAGGAGCGTGTTGCGAGTGAGTGAGGGGAGGG
AG
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protein sequence of NO24G01280.1

>NO24G01280.1-protein ID=NO24G01280.1-protein|Name=NO24G01280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=247bp
MRLAFNFASPILGLAWHTPCFTFACAICQTHRYHTTAVYLRTPPSKMDDG
GGMDMMGSMSMTFASFSTYKMQVVWGWWDVKTKGQYVATLLALAAAVVVH
RWLVKLEVAYVKKTLVQATEDGGAGRGGGGGGFVGGLGINTTTTANMELG
ESLLMGGGGTGAGRTRLHGAVVKSVPFSKRLMHAAFSGLLYLYALLLMLA
AMTYNPGLFLALGVGYIVGELCFSTTFDLVGVGGMVMRGKGGACCE*
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Synonyms
Publications